Wild Rice Research Articles

Genome evolution and diversity of wild and cultivated rice species

Genome evolution and diversity of wild and cultivated rice species

Mapping the Trade Direction of Indian Rice with Markov Chain Analysis

Agriculture is a cornerstone of India’s economy, with rice being a critical crop that ranks second globally, feeding over half of the world’s population and serving as a staple in Southeast Asia. This study explores the direction of India’s rice trade using Markov Chain Analysis, following an examination of the compound annual growth rate (CAGR) in rice exports to various global regions. Results reveal a 2.26 per cent CAGR in rice production, while export values surged by 16.8 per cent annually. Specifically, the CAGR for rice exports to Iraq and Iran reached 58.6 per cent and 46.47 per cent, respectively. In quantity, India’s rice exports grew by 10.82 per cent, with Iraq and Iran at 44 per cent and 34 per cent. The Transitional Probability Matrix for 2001-2022 indicates strong regional retention, with Africa maintaining 78 per cent of trade value and Asia 93.7 per cent, and similar trends in quantity, where Asia retained 92.6 per cent and Africa 89.1 per cent. These findings highlight India’s potential to diversify rice exports and strengthen its global competitive edge, urging a focus on enhancing processing, transportation, and quality standards for wider market appeal.

Rice sucrose non-fermenting related protein kinase (SnRK1) has a limited role in defense against Fall armyworm (Spodoptera frugiperda)

Sucrose non-fermenting (SNF) related protein kinase 1 (SnRK1) is a master regulator of energy deprivation signaling and has also been implicated in abiotic and biotic stress regulation. SnRK1 promotes stress tolerance through metabolic and transcriptional changes and plays important roles in innate immunity against various pathogens. However, whether it plays a role against insect herbivory is not understood. To test this, using the wild type (with SnRK1) and snrk1 mutant lines in rice, we examined the potential role of SnRK1 in rice against the ruinous pest, Fall armyworm (FAW), Spodoptera frugiperda. We also investigated the response of FAW towards these lines at different time intervals after exogenous application of plant hormone, Jasmonic acid (JA), and a JA blocker (Ibuprofen). Additional experiments by feeding FAW with leaf infused diet, fresh leaves, and a short-term exposure of FAW to the lines were also carried out. FAW mass gain, growth and development, and host ecophysiological traits were observed. In addition, we also quantified the major surface defenses- trichomes, and wax before and after herbivory. Our results show that FAW response did not vary between mutants and wild type rice. Meanwhile, we found plant hormonal application influenced the ecophysiological traits regardless of mutants and wild type rice. Collectively, we show that while defense against FAW in rice is JA mediated, SnRK1 has a limited role as observed through manipulative experiments with the wild type and snrk1 mutant rice lines.

The protective roles of Oryza glumaepatula and phytohormone in enhancing rice tolerance to cadmium stress by regulating gene expression, morphological, physiological, and antioxidant defense system.

The heavy metal cadmium (Cd) is highly poisonous and has received significant attention from environmental scientists due to its harmful impacts on plants. Oryza glumaepatula is a wild rice that contains useful genes against biotic and abiotic stresses. Therefore, the current study used SG007, a single-segment substitution line (SSSL), generated by crossing O. glumaepatula with an elite rice cultivar (HJX74), to evaluate the resistance potential against Cd. Moreover, we assessed the efficacy of strigolactone GR24 (1 μM) against Cd toxicity (100 μM) by investigating physiological, biochemical, and molecular mechanisms in both cultivars (i.e., SG007 and HJX74). The findings of this study revealed that Cd toxicity declined the chlorophyll a, chlorophyll b, and carotenoids by 50%, 20%, and 44% in SG007, and 58%, 39%, and 59% in HJX74 by enhancing electrolyte leakage (EL), malondialdehyde (MDA), and hydrogen peroxide (H2O2) by 113%, 184%, and 119% in SG007 and 248%, 273% and 195% in HJX74, respectively. GR24 improved growth under Cd stress in both cultivars, and SG007 exhibited better plant growth parameters, antioxidant enzymatic activities, nitric oxide synthase (NOS), and nitric oxide (NO) levels than HJX74 under Cd toxicity. GR24 with SG007 regulated expressions of Cd transporters and reduced the cytological disruptions in cell organelles. The combined utilization of SG007 and GR24 reduced Cd accumulation and oxidative stress and improved plant growth parameters and enzymatic activities. In conclusion, our study highlights the potential of utilizing SG007 in conjunction with GR24 as a practical strategy to mitigate Cd pollution in rice. The results not only underscore the beneficial effects of strigolactone GR24 in alleviating Cd-induced stress but also emphasize the valuable genetic traits of O. glumaepatula in developing rice lines with enhanced tolerance to heavy metals, offering broader implications for sustainable agriculture and crop improvement in contaminated environments.

Soft plant root structure-media flow interactions: Exploring the adverse effect of lead contamination in North-Eastern Indian rice

We experimentally investigate the effect of lead (Pb2+) contamination on the roots of an Assamese rice line variety Lachit using a heavy metal analyzing fluidic tool. To demonstrate the adverse effects of lead contamination on rice seedlings in a controlled environment, we have performed a number of multidisciplinary experiments. Also, we develop a numerical model in this endeavor to predict the Michaelis–Menten kinetics parameters, which are used to depict the lead transport phenomenon following soft root structure-media flow interactions. We show that increased inlet lead concentration of the media solution leads to a reduction in root growth exponentially in the developed fluidic device. As supported by the Raman spectra analysis, the drastic metabolic changes are visible under lead contamination. Our results revel that, in comparison to the control condition, lead accumulation results in a decrease in the uptake of nitrogen and also, the metallic nutritional components (K+, Na+, and Ca2+). Under lead contamination, the average osmotic pressure difference at the root surface is seen to be less than in the control situation. The inferences drawn from the current research shed light on the detrimental effects of lead contamination on rice roots, which have the potential to significantly lower agricultural yields and threaten food security in areas where rice is the primary food source.

First report of leaf blight of water chestnut (Trapa natans L.) caused by Sclerotium hydrophilum in central China.

Trapa natans L., or water chestnut, is a currently globally distributed aquatic plant. The Yangtze River basin in China, a site origin of water chestnut (Fan et al., 2022), has extensive cultivation as a vegetable. In June 2021, a survey at the National Aquatic Vegetable Resource Garden in Wuhan, Hubei, China, revealed browning and wilting of water chestnut plants, with abundant white mycelia and brown to black sclerotia on leaves, indicative of southern blight (Sclerotium rolfsii). Field disease incidence a 1 ha area reached 70%, reducing fruit yield by 50%. About 10% of diseased plants showed blackening and rot from petioles to leaves. White sclerotial primordia and small brown to black sclerotia formed on the plant surfaces. By late August, symptoms exceeded 60%. To identify the pathogen, isolations were made from 243 sclerotial samples using 75% alcohol to disinfect, rinsed three times with water, and then incubated on potato dextrose agar (PDA) at 25℃. A total of 129 isolates were obtained, most of which exhibited characteristics of S. rolfsii. However, 21 isolates had sclerotia significantly smaller than those of S. rolfsii (1 to 1.5 mm in diameter). These isolates, cultured on PDA, produced abundant fluffy white aerial hyphae, 3 to 6 μm wide. Optimal mycelium growth was between 25 °C to 30 °C, with an average daily rate of 10 mm. White to light brown sclerotia appeared after 5 days and turned black within 10 to 14 days, averaging 0.34 mm in diameter (n=50). Some isolates produced a light brown pigment. These traits matched the description of S. hydrophilum (Bashyal et al. 2021). Isolates 221 and 238 were selected for molecular identification, with genomic DNA extracted from mycelia using the CTAB method. PCR amplification was conducted using ITS1/ITS4 and NS1/NS6 primers to target the internal transcribed spacer (ITS) and the small subunit ribosomal RNA gene (ssrRNA). Sequence analysis showed that the ITS sequence of isolate 221 (GenBank Acc. No. OR512512) had 99.84% sequence identity with S. hydrophilum Msh6 (GenBank Acc. No. FJ595946), and isolate 238 (GenBank Acc. No. PP035993) had 99.72% identity with S. hydrophilum Whcc-4 (GenBank Acc. No. PP035994). The ssrRNA sequences of both isolates (GenBank Acc. No. PP237261) had 99.69% identity with S. hydrophilum strain Hbq001 (GenBank Acc. No. KY995575), confirming their identification as S. hydrophilum. To assess pathogenicity, 16 water chestnut plants (cultivar Jia-yu Ling) at the rosette stage were placed individually in 32 cm diameter, 10 cm deep containers with fresh water. Eight plants were inoculated with 50 mature sclerotia from PDA cultures of isolates 221 and 238, and incubated at 25 °C for 14 days, with four plants per isolate. The remaining eight plants served as controls. Containers were covered to maintain 100% relative humidity at 25 °C to 32 °C for 3 days. This procedure was repeated twice. After 7 days, inoculated plants developed dark brown lesions on petioles that spread to leaves by 15 days post-inoculation. Fungi isolated from diseased leaves resembled isolates 221 and 238, fulfilling Koch's postulates. S. hydrophilum infecting at least 19 genera of plants, including rice (Zhong et al. 2018), wild rice, water lily (Kernkamp et al. 1977) and watershield (Fu et al. 2024). This is the first report of S. hydrophilum infecting water chestnut (T. natans) in central China, identifying it as a co-pathogen with S. rolfsii. Their combined presence may heighten plant mortality and threaten water chestnut cultivation.

Setting Up Methane Mitigation Measures for Indian Rice Fields: Representative Emissions and New Interpretations

AbstractRice cultivation produces methane (CH4) due to anaerobic conditions induced by flood irrigation, significantly contributing to global warming. While most studies use national emission factors (EFs), our study synthesized 726 published measurements across India (the second largest methane emitter after China) to develop district‐level water regime‐specific EFs for estimating district‐scale emissions and warming potential. CH4 emissions from Indian rice fields increased from 3.7 (3.4–4.1) Tg to 4.8 (4.4–5.3) Tg during 1966–2017, driven by rice area and water‐regime variations. Meanwhile, district‐level emissions increased by ∼930%, influenced by management practices such as animal manure, fertilizer application, and water input, accurately reflecting regional variations compared to previous estimates. Employing a novel muti‐output random forest mitigation model (R2 ∼ 0.9), we found that a 25% warming reduction at the district‐level requires curtailing animal manure, nitrogen fertilizer, and water input by 8.5%, 12.9%, and 10.9%, respectively. These curtailments nearly double for a 50% mitigation scenario. Comparing our emissions with previous bottom‐up studies (used as inputs in global climate models) revealed discrepancies in prior national figures. With top‐down estimates, our emissions correlated positively, suggesting higher reliability. Including our new regionally validated data in global climate models may provide more accurate climate projections at the Indian and global scales.

Genetic Variability and Association Studies for Morpho-floral Traits in Backcross Introgression Lines of Rice (Oryza sativa L.)

Background: Wild introgressions are pivotal in enriching the genetic diversity of cultivated varieties by introducing novel alleles beneficial for crop improvement. Understanding insights into genetic variability and association studies of morphological and floral traits are crucial for enhancing hybrid seed production in rice. Methods: 290 backcross introgression lines (BC4F2) from inter-specific cross of CRMS 32B (maintainer of male sterile line as low stigma exsertion recipient parent) cv. Oryza sativa with Oryza longistaminata (wild rice as high stigma exsertion donor parent) were assessed for 12 morpho-floral traits. The experiment was laid out in randomized complete block design (RCBD) at Institute of Agricultural Sciences, Banaras Hindu University, Varanasi, during Kharif, 2019. Result: ANOVA results showed significant differences among lines for all examined traits. The phenotypic coefficient of variation (PCV) was slightly greater than genotypic coefficient of variation (GCV) for each trait. High PCV, GCV, heritability and genetic advance as percentage of mean were observed for dual stigma exsertion percentage (DSE%) and total stigma exsertion percentage (TSE%), whereas moderate to high values of these parameters were noted for single stigma exsertion percentage (SSE%), grain yield per plant (GYPP), effective tillers per plant (ETPP) and grains per panicle (GPP) traits. Most traits showed positive skewness, except traits SFP (spikelet fertility percentage), SSE% and TSE%. Most traits recorded leptokurtic kurtosis, whereas plant height (PH), GYPP and TSE% exhibited platykurtic kurtosis. TSE% displayed a highly significant positive association with SSE% and DSE%, while GYPP showed a significant positive correlation with ETPP and GPP, presenting a promising opportunity for simultaneous selection of these traits.

Microplastic contamination in Indian rice: A comprehensive characterization and health risk assessment

In this study, we investigate, for the first time, the abundance, distribution, chemical composition, and exposure of microplastics (MPs) in Indian rice and their impact on human health. The physical and chemical characteristics of MPs were measured using a stereomicroscope, μ-Fourier transform infrared spectroscopy, and μ-Raman spectroscopy. MPs were identified in all samples, with an average abundance of 30.3 ± 8.61 particles/100 g. The abundance of MPs was higher in RS-4 and lower in RS-3. Notably, the size of MPs found is between <0.05 to 1.00 mm. The results showed that four types of MPs were identified: polyethylene and polyethylene terephthalate were dominant, followed by polypropylene and polyamide. MPs were ubiquitous in all rice sample, indicating ingestion as a potential pathway for the entry of plastics into the human body. According to the pollution load index values, which ranged from 1.00 to 1.528, the contamination of MPs in the rice samples was minimal. The highest estimated daily intake values of MPs from rice consumption by Indian males, females, and children were 1.292, 1.527, and 1.313 particles kg-1 day-1, respectively. Our study sheds light on MP exposure and provides fundamental data for evaluating the potential health risks associated with MPs.

Functional diversity of oxidosqualene cyclases in genus Oryza.

Triterpene skeletons, catalyzing by 2,3-oxidosqualene cyclases (OSCs), are essential for synthesis of steroids and triterpenoids. In japonica rice cultivars Zhonghua11, a total of 12 OsOSCs have been found. While the catalytic functions of OsOSC1, 3, 4, 9, and 10 remain unclear, the functions of the other OsOSCs have been well studied. In this study, we conducted a comprehensive analysis of 12 OSC genes within genus Oryza with the aid of 63 genomes from cultivated and wild rice. We found that OSC genes are relatively conserved within genus Oryza with a few exceptions. Collinearity analysis further suggested that, throughout the evolutionary history of genus Oryza, the OSC genes have not undergone significant rearrangements or losses. Further functional analysis of 5 uncharacterized OSCs revealed that OsOSC10 was a friedelin synthase, which affected the development of rice grains. Additionally, the reconstructed ancestral sequences of Oryza OSC3 and Oryza OSC9 had lupeol synthase and poaceatapetol synthase activity, respectively. The discovery of friedelin synthase in rice unlocks a new catalytic path and biological function of OsOSC10. The pan-genome analysis of OSCs within genus Oryza gives insights into the evolutionary trajectory and products diversity of Oryza OSCs.

Signatures of local adaptation and maladaptation to future climate in wild Zizania latifolia

Global climate change poses challenges to agricultural production and food security. Assessing the adaptive capacity of crop wild relatives to future climate is important for protecting key germplasm resources and breeding new crops. We performed population genomics, genotype-environment association analyses, and genomic offset assessment of Chinese wild rice, Zizania latifolia, a crop wild relative and potential new grain crop, based on 168 individuals from 42 populations. We found two genetic lineages in Z. latifolia, corresponding to the south and north of its range, that diverged during the Late Pleistocene. We also identified lineage-specific positively selected genes associated with flower development and flowering, seed shattering, pathogen defense response and cold tolerance. We further found that populations from southeastern China are the most maladapted to future climate and should be prioritized for conservation. Our findings provide important clues for leveraging existing genetic diversity to identify important germplasm resources and create climate-resilient crops.

Virome Characterization of Native Wild-Rice Plants Discovers a Novel Pathogenic Rice Polerovirus With World-Wide Circulation.

Pandemics originating from zoonotic viruses have posed significant threats to human health and agriculture. Recent discoveries have revealed that wild-rice plants also harbour viral pathogens capable of severely impacting rice production, a cornerstone food crop. In this study, we conducted virome analysis on ~1000 wild-rice individual colonies and discovered a novel single-strand positive-sense RNA virus prevalent in these plants. Through comprehensive genomic characterization and comparative sequence analysis, this virus was classified as a new species in the genus Polerovirus, designated Rice less tiller virus (RLTV). Our investigations elucidated that RLTV could be transmitted from wild rice to cultivated rice via a specific insect vector, the aphid Rhopalosiphum padi, causing less tiller disease symptoms in rice plants. We generated an infectious cDNA clone for RLTV and demonstrated systemic infection of rice cultivars and induction of severe disease symptoms following mechanical inoculation or stable genetic transformation. We further illustrated transmission of RLTV from stable transgenic lines to healthy rice plants by the aphid vector, leading to the development of disease symptoms. Notably, our database searches showed that RLTV and another polerovirus isolated from a wild plant species are widely circulating not only in wild rice but also cultivated rice around the world. Our findings provide strong evidence for a wild plant origin for rice viruses and underscore the imminent threat posed by aphid-transmitted rice Polerovirus to rice cultivar.

Reexploring Rice Germplasm: Enlightening a New Path Towards Abiotic Stress-resilient Crop

Oryza sativa, the commonly cultivated rice, is one of the most important crops for human consumption, but is also a crop whose production system is increasingly threatened by the current climate changes. Due to its intensive water requirement rice faces a lot of challenges due to abiotic stresses like drought, heat stress, salinity, flooding etc. Drought is the major abiotic stress to rice grain production under unpredictable and changing environmental conditions. Traits supporting drought resistance are limited in cultivars, while wild rice species like O. glaberrima, O. longistaminata, O. rufipogon and O. meridonalis represent an important reservoir of useful genes for this trait which can be exploited to develop varieties tolerant to drought. Similarly O. australiensis, O. coarctata and O. rufipogon serve as an important sources for salinity-tolerant genes. O. rufipogon, O. meridonalis, O. australiensis comprise a collection of accessions that are reservoirs for heat-tolerant genes. Although many efforts have resulted in breeding rice varieties that are relatively tolerant to their local environments; climate change and population growth are expected to soon require a new, rapid generation of stress-tolerant rice germplasm. Diversity studies suggest that the current diversity within rice varieties may not be sufficient for generation of highly resistant or tolerant varieties for the unfavorable growing conditions. All the efforts to design an ideotype to increase production and productivity has been attempted previously, rice self-sufficiency can be attained only if high production and productivity is coupled with a high degree of tolerance and resistance to biotic and abiotic stress factors. Since it has been found that wild rice relatives serve as a hub for many desirable genes conferring tolerance or resistance to specific stresses, the present article is focused on provide an overview of different wild ancestors of rice which can be exploited to identify suitable donors for gene of interest, their ecological and genomic diversity and the variation observed in wild Oryza species for different stress tolerance traits. Such identified traits can be incorporated in modern day breeding programmes through marker assisted breeding to develop cultivable varieties with desired tolerance to abiotic stresses or transfer such traits to modern day cultivars through backcross breeding.

New persistent plant RNA virus carries mutations to weaken viral suppression of antiviral RNA interference.

Persistent plant viruses are widespread in natural ecosystems. However, little is known about why persistent infection with these viruses may cause little or no harm to their host. Here, we discovered a new polerovirus that persistently infected wild rice plants by deep sequencing and assembly of virus-derived small-interfering RNAs (siRNAs). The new virus was named Rice tiller inhibition virus 2 (RTIV2) based on the symptoms developed in cultivated rice varieties following Agrobacterium-mediated inoculation with an infectious RTIV2 clone. We showed that RTIV2 infection induced antiviral RNA interference (RNAi) in both the wild and cultivated rice plants as well as Nicotiana benthamiana. It is known that virulent virus infection in plants depends on effective suppression of antiviral RNAi by viral suppressors of RNAi (VSRs). Notably, the P0 protein of RTIV2 exhibited weak VSR activity and carries alanine substitutions of two amino acids broadly conserved among diverse poleroviruses. Mixed infection with umbraviruses enhanced RTIV2 accumulation and/or enabled its mechanical transmission in N. benthamiana. Moreover, replacing the alanine at either one or both positions of RTIV2 P0 enhanced the VSR activity in a co-infiltration assay, and RTIV2 mutants carrying the corresponding substitutions replicated to significantly higher levels in both rice and N. benthamiana plants. Together, our findings show that as a persistent plant virus, RTIV2 carries specific mutations in its VSR gene to weaken viral suppression of antiviral RNAi. Our work reveals a new strategy for persistent viruses to maintain long-term infection by weak suppression of the host defence response.

Lessons learned from implementing culturally sensitive adaptations to a nutrition education program in four Anishinaabe communities

BackgroundThe Anishinaabe ways of eating healthy and staying physically active are not well represented in federally funded health education programs like Supplemental Nutrition Assistance Program Education (SNAP-Ed). The curricula approved for use by SNAP-Ed implementing agencies was not developed with Anishinaabe foods, cultures and traditions in mind. ObjectiveThis paper shares the process and lessons learned from a collaborative effort to adapt recipes from a SNAP-Ed-approved nutrition and cooking education program, Cooking Matters® at Home (CMAH) to reflect cultural preferences and traditions of participants from four Anishinaabe tribal communities in Michigan. MethodsUniversity Extension instructors, tribal health staff and an inter-tribal organization co-designed and implemented the adaptation. Extension instructors facilitated four separate series of cooking and nutrition classes using CMAH curriculum with four Tribes. A descriptive, cross-sectional evaluation design focused on participant engagement and recipe adaptation. Evaluation included formative interviews with tribal health staff, post-intervention community participant focus groups to assess program satisfaction and cultural acceptability of adaptations, and process interviews with Extension instructors and tribal health staff. ResultsBetween October 3 and December 7, 2022, classes reached 30 adults across four sites. Average class size was 7-8 participants. 86% of participants attended every class session offered in their community. Eight recipes were adapted to include traditional foods (e.g., wild rice, maple syrup); eleven were prepared as written. A challenge was access and availability of some traditional recipe ingredients. Participants expressed a range of food knowledge and behaviors that reflect diverse histories and cultures within each community. Tribal staff and participants suggested that Extension instructors build rapport with community members, approach activities and participants with curiosity rather than sharing "expert" advice, implement more continuous programming, and improve cultural sensitivity. ConclusionsSNAP-Ed programs should support access to local indigenous foods and make space for both community and individual traditions.

Competitiveness of Indian Rice in the Global Market: A Comprehensive Revealed Comparative Advantage (RCA) and Nominal Protection Coefficient (NPC) Evaluation

Competitiveness of Indian Rice in the Global Market: A Comprehensive Revealed Comparative Advantage (RCA) and Nominal Protection Coefficient (NPC) Evaluation

Salt-responsive miRNA-SSR markers from Dongxiang wild rice: characterization and potential application in exploring salt-tolerant genetic resources

Abstract MicroRNAs (miRNAs) play important roles in regulating salt tolerance in Dongxiang wild rice (DXWR, Oryza rufipogon Griff.). The development of salt-responsive miRNA-simple sequence repeat (SSR) markers will significantly bolster research on DXWR, providing novel tools for exploring salt-tolerant genetic resources and advancing the development of salt-tolerant rice varieties. In the present study, a total of 137 miRNA-SSR markers were successfully developed, specifically derived from miRNAs responsive to salt stress in DXWR. Subsequently, a subset of 20 markers was randomly selected for validation across three distinct DXWR populations, along with 35 modern rice varieties. Notably, 13 of these markers exhibited remarkable polymorphism. The polymorphic markers collectively amplified 52 SSR loci, averaging four alleles per locus. The polymorphism information content values associated with these loci spanned from 0.23 to 0.70, with a mean value of 0.49. Particularly noteworthy is the miR162a-SSR marker, which demonstrated distinct allelic patterns and holds potential as a diagnostic marker for discriminating the salt-tolerant rice varieties from the non-tolerant varieties. This study provides a valuable tool for genetic analysis and precision breeding, facilitating the identification and utilization of valuable salt-tolerant genetic resources.

Evaluating the effect of organic NPK granules on yield, nutrient uptake, post-harvest soil fertility and soil microbial population in rice (Oryza sativa L.)

Rice is the most important and staple food crop for more than two third of population of India. India is the second largest rice producing country in the world after China. Although, rice planted area in India is 40 per cent higher than in China, Indian rice production is 30 percent below Chinese production because of lower yields. Among several constraints of production, nutrient management plays a key role in realizing sustainable yield from any given cultivation practices. Integrated nutrient management system plays a vital role in balancing the soil fertility and plant nutrient supply to an optimum level through the judicious and efficient use of chemical fertilizers, green manure, FYM and biofertilizers leading to an eco-friendly approach and economically viable solution for this problem. Continuous integrated use of organic manures with chemical fertilizers would be quite promising in assessing the sustainability of a cropping system vis-à-vis monitoring the soil properties. To investigate further, a field experiment was conducted at the Experimental Farm, Department of Agronomy, Annamalai University, Annamalai Nagar, Cuddalore district of Tamil Nadu from June to September 2023 with a key objective of evaluating the effect of combined application of graded levels of conventional fertilizers along with organic NPK granules in lowland rice. The experiment was laid out in randomized block design with seven treatments comprised of different levels of conventional fertilizers along with organic NPK granules. Among the nutrient management evaluated, all the yield attributes of lowland rice viz., grain yield, straw yield, uptake of nutrients and post-harvest soil available nutrients were significantly influenced by the application of 70% NPK through synthetic fertilizers and 30% NPK through organic granules. Combining conventional fertilizers along with organic NPK granules improved nitrogen use efficiency via metabolite production, enzyme activity stimulation, and microbial rhizosphere interactions significantly enhancing the yield attributes and yield.

Evolutionary Systems Biology Identifies Genetic Trade-offs In Rice Defense Against Above- and Belowground Attackers.

Like other plants, wild and domesticated rice species (Oryza nivara, O. rufipogon, and O. sativa) evolve in environments with various biotic and abiotic stresses that fluctuate in intensity through space and time. Microbial pathogens and invertebrate herbivores such as plant-parasitic nematodes and caterpillars show geographical and temporal variation in activity patterns and may respond differently to certain plant defensive mechanisms. As such, plant interactions with multiple community members may result in conflicting selection pressures on genetic polymorphisms. Here, through assays with different above- and belowground herbivores, the fall armyworm (Spodoptera frugiperda) and the southern root-knot nematode (Meloidogyne incognita), respectively, and comparison with rice responses to microbial pathogens, we identify potential genetic trade-offs at the KSL8 and MG1 loci on chromosome 11. KSL8 encodes the first committed step towards biosynthesis of either stemarane- or stemodane-type diterpenoids through the japonica (KSL8-jap) or indica (KSL8-ind) allele. Knocking out KSL8-jap and CPS4, encoding an enzyme that acts upstream in diterpenoid synthesis, in japonica rice cultivars increased resistance to S. frugiperda and decreased resistance to M. incognita. Furthermore, MG1 resides in a haplotype that provided resistance to M. incognita, while alternative haplotypes are involved in mediating resistance to the rice blast fungus Magnaporthe oryzae and other pests and pathogens. Finally, KSL8 and MG1 alleles are located within trans-species haplotypes and may be evolving under long-term balancing selection. Our data are consistent with a hypothesis that polymorphisms at KSL8 and MG1 may be maintained through complex and diffuse community interactions.

“The Devil You Know”: Barriers and Opportunities for Co-Designing Microclimate Sensors, A Case Study of Manoomi

Current environmental challenges have profound local consequences and often benefit from the collection of fine-grained microclimate data. Advances in wireless sensor networks and the Internet of Things have led to technologies nominally suited to support remote sensing; however, in practice long-running deployments of in-field environmental sensors are rare. Field conditions are often remote and culturally sensitive, with limited power, Internet, transportation, and human infrastructure; advances in device technology alone will not suffice. We ask how communities, Internet of Things researchers, government, and other interested parties can work together to co-design useful, low burden, sustainability-focused infrastructure. Toward this end, we conducted 11 semi-structured interviews with 13 experts who use or rely on environmental sensing technology. To complement our interview data, we engaged in three months of participant observation while immersed in organizations specifically working toward manoomin (wild rice) conservation. We make two primary contributions. First, we confirm and enrich a five-stage model, the microclimate sensor lifecycle, focusing on desired features and persistent challenges. Second, we outline a space for co-design of microclimate sensors with emphasis on the cost of experience, the generally unaddressed issue of technical usability in the messy field, and the opportunity for community engagement to improve technical design and outcomes. Furthermore, we discuss future design opportunities, recommendations, and challenges in the microclimate sensor design, deployment, and sustainability space.