Wild Cucumbers Research Articles

Established stands of the highly invasive Echinocystis lobata on the Ramsar sites of the southern part of the Pannonian plain

Monitoring the presence of invasive species in natural wetlands is crucial for numerous reasons, including their negative impact on biodiversity, conservation and the ecosystem services provided by these important fragile areas. The aim of this paper was to investigate the presence and distribution of the highly invasive liana Echinocystis lobata (wild cucumber), and to determine its coenological relations with the native plant species in the Ramsar sites of the southern part of the Pannonian Plain (the southeastern part of Central Europe, northern Serbia). We conducted the phytocenological research of the selected protected riparian areas in detail over a six-year period (2011-2015 and 2020). This study revealed the significant presence of the highly invasive species E. lobata in the studied sites. Wild cucumbers were found in 146 plots in four out of the seven investigated areas. Cluster analyses distinguished four groups of relev?s dominated by E. lobata, which were described, and their dominant and constant species were identified. Habitat type identification was done, and the habitat preferences of E. lobata were determined. The spatial distribution of the four groups is such that they occur in a number of different habitat types or local communities. The species pool which makes up each of these four groups is thus geographically larger than the local community under study, so we can treat them as independently established and well-defined new community assemblages. Plant communities dominated by the invasive species E. lobata have not been described previously. Therefore, this work provides new data, and contributes to the further research and comparative analyses needed to describe invasive plant communities dominated by wild cucumber. In addition, the identification of habitat types which are most occupied by E. lobata is very important for managers of protected areas, as it allows them to better control and remove this highly invasive species, but also to prevent its further spread.

QTL mapping and genome-wide association study reveal two novel loci associated with green flesh color in cucumber

BackgroundGreen flesh color, resulting from the accumulation of chlorophyll, is one of the most important commercial traits for the fruits. The genetic network regulating green flesh formation has been studied in tomato, melon and watermelon. However, little is known about the inheritance and molecular basis of green flesh in cucumber. This study sought to determine the main genomic regions associated with green flesh. Three F2 and two BC1 populations derived from the 9110Gt (cultivated cucumber, green flesh color) and PI183967 (wild cucumber, white flesh color) were used for the green flesh genetic analysis. Two F2 populations of them were further employed to do the map construction and quantitative trait loci (QTL) study. Also, a core cucumber germplasms population was used to do the GWAS analysis.ResultsWe identified three indexes, flesh color (FC), flesh extract color (FEC) and flesh chlorophyll content (FCC) in three environments. Genetic analysis indicated that green flesh color in 9110Gt is controlled by a major-effect QTL. We developed two genetic maps with 192 and 174 microsatellite markers respectively. Two novel inversions in Chr1 were identified between cultivated and wild cucumbers. The major-effect QTL, qgf5.1, was identified using FC, FEC and FCC index in all different environments used. In addition, the same qgf5.1, together with qgf3.1, was identified via GWAS. Further investigation of two candidate regions using pairwise LD correlations, combined with genetic diversity of qgf5.1 in natural populations, it was found that Csa5G021320 is the candidate gene of qgf5.1. Geographical distribution revealed that green flesh color formation could be due to the high latitude, which has longer day time to produce the photosynthesis and chlorophyll synthesis during cucumber domestication and evolution.ConclusionsWe first reported the cucumber green flesh color is a quantitative trait. We detected two novel loci qgf5.1 and qgf3.1, which regulate the green flesh formation in cucumber. The QTL mapping and GWAS approaches identified several candidate genes for further validation using functional genomics or forward genetics approaches. Findings from the present study provide a new insight into the genetic control of green flesh in cucumber.

Genome-wide analysis of microRNA targeting impacted by SNPs in cucumber genome

BackgroundmicroRNAs (miRNAs) are endogenous small RNAs that play important regulatory functions in plant development. Genetic variations in miRNAs sequences or their target-binding sites (microRNA-target interaction sites) can alter miRNA targets in animal and human. Whether these single nucleotide polymorphisms (SNPs) in plant are functional have not yet been determined.ResultsIn this study, we constructed leaf, root, and stem-derived small libraries of cucumber (Cucumis sativus) line 9930 (cultivated China-group cucumber) and C. sativus var. hardwickii (wild India group cucumber). A total of 22 conserved miRNA families, nine less-conserved miRNA families, and 49 cucumber-specific miRNAs were identified in both line 9930 and hardwickii. We employed cucumber resequencing data to perform a genome-wide scan for SNPs in cucumber miRNA-target interaction sites, including miRNA mature sequences and miRNA-target binding sites. As a result, we identified a total of 19 SNPs in mature miRNA sequences and 113 SNPs in miRNA-target binding sites with the potential to affect miRNA-target interactions. Furthermore, we experimentally confirmed that these SNPs produced 14 9930-unique targets mRNAs and 15 hardwickii-unique targets mRNA for cucumber miRNAs. This is the first experimental validation of SNPs in miRNA-target interaction sites affecting miRNA-target binding in plants.ConclusionsOur results indicate that SNPs can alter miRNA function and produce unique miRNA targets in cultivated and wild cucumbers. Therefore, miRNA-related SNPs may have played important in events that led to the agronomic differences between domestic and wild cucumber.

Chromosome rearrangements during domestication of cucumber as revealed by high‐density genetic mapping and draft genome assembly

Cucumber, Cucumis sativus L. is the only taxon with 2n = 2x = 14 chromosomes in the genus Cucumis. It consists of two cross-compatible botanical varieties: the cultivated C. sativus var. sativus and the wild C. sativus var. hardwickii. There is no consensus on the evolutionary relationship between the two taxa. Whole-genome sequencing of the cucumber genome provides a new opportunity to advance our understanding of chromosome evolution and the domestication history of cucumber. In this study, a high-density genetic map for cultivated cucumber was developed that contained 735 marker loci in seven linkage groups spanning 707.8 cM. Integration of genetic and physical maps resulted in a chromosome-level draft genome assembly comprising 193 Mbp, or 53% of the 367 Mbp cucumber genome. Strategically selected markers from the genetic map and draft genome assembly were employed to screen for fosmid clones for use as probes in comparative fluorescence in situ hybridization analysis of pachytene chromosomes to investigate genetic differentiation between wild and cultivated cucumbers. Significant differences in the amount and distribution of heterochromatins, as well as chromosomal rearrangements, were uncovered between the two taxa. In particular, six inversions, five paracentric and one pericentric, were revealed in chromosomes 4, 5 and 7. Comparison of the order of fosmid loci on chromosome 7 of cultivated and wild cucumbers, and the syntenic melon chromosome I suggested that the paracentric inversion in this chromosome occurred during domestication of cucumber. The results support the sub-species status of these two cucumber taxa, and suggest that C. sativus var. hardwickii is the progenitor of cultivated cucumber.

Cucumber ( Cucumis sativus ) and melon ( C. melo ) have numerous wild relatives in Asia and Australia, and the sister species of melon is from Australia

Among the fundamental questions regarding cultivated plants is their geographic origin and region of domestication. The genus Cucumis, which includes cucumber (Cucumis sativus) and melon (Cucumis melo), has numerous wild African species, and it has therefore been assumed that melon originated in Africa. For cucumber, this seemed less likely because wild cucumbers exist in India and a closely related species lives in the Eastern Himalayas. Using DNA sequences from plastid and nuclear markers for some 100 Cucumis accessions from Africa, Australia, and Asia, we show here that melon and cucumber are of Asian origin and have numerous previously overlooked species-level relatives in Australia and around the Indian Ocean. The wild progenitor of C. melo occurs in India, and our data confirm that the Southeast Asian Cucumis hystrix is the closest relative of cucumber. Most surprisingly, the closest relative of melon is Cucumis picrocarpus from Australia. C. melo diverged from this Australian sister species approximately 3 Ma, and both diverged from the remaining Asian/Australian species approximately 10 Ma. The Asian/Australian Cucumis clade comprises at least 25 species, nine of them new to science, and diverged from its African relatives in the Miocene, approximately 12 Ma. Range reconstruction under maximum likelihood suggests Asia as the ancestral area for the most recent common ancestor of melon and cucumber, fitting with both having progenitor populations in the Himalayan region and high genetic diversity of C. melo landraces in India and China. Future investigations of wild species related to melon and cucumber should concentrate on Asia and Australia.

Resistance to Cucurbit yellow stunting disorder virus in Cucumber.

Three hundred accessions of Cucumis sativus, including wild cucumbers, land races, traditional cultivars, and breeding lines, were evaluated under natural-infection conditions in order to identify potential sources of resistance to Cucurbit yellow stunting disorder virus (CYSDV). Although 100% of the susceptible control plants showed typical yellowing symptoms induced by CYSDV, another 24 C. sativus accessions showed partial or total absence of yellowing symptoms. In contrast, when CYSDV inoculation was carried out under controlled conditions, only two (A1 and A2) of these 24 accessions showed resistance to the virus. The nature of the resistance found in A1 and A2 plants was characterized by studying the pattern of virus accumulation and symptom development under controlled infection conditions, and by analyzing the possible nonpreference of Bemisia tabaci for these accessions under free-choice conditions. There was a delay in the establishment of the CYSDV infection in A1 and A2 plants which was evident shortly after inoculation and in apical leaves of the plants at long times after inoculation. Symptom severity was also less for A1 and A2 than for a susceptible control at 8 and 12 weeks postinoculation. Thus, delayed viral infection appeared to be associated with decreased symptom severity in A1 and A2 plants. Our results also showed nonpreference for plants of the A2 accession by B. tabaci, the CYSDV vector.

Related glycoprotein lectins from root stocks of wild cucumbers

The lectin from root stocks of the Californian wild cucumber ( Marah macrocarpus) has a molecular structure similar to that of the root stock lectin from white bryony ( Bryonia dioica). These two Cucurbitaceae lectins ( M, around 60-65 000) are composed of two different subunits which are held together by disulphide bridges. They resemble each other in amino acid and carbohydrate composition and are serologically related. It appears that, during the evolution of the Cucurbitaceae family, the genes encoding root stock lectins of at least some perennial species have been conserved fairly well.