White-toothed Shrew Research Articles

Lethal Borna disease virus 1 infections of humans and animals – in-depth molecular epidemiology and phylogeography

Borna disease virus 1 (BoDV-1) is the causative agent of Borna disease, a fatal neurologic disorder of domestic mammals and humans, resulting from spill-over infection from its natural reservoir host, the bicolored white-toothed shrew (Crocidura leucodon). The known BoDV-1-endemic area is remarkably restricted to parts of Germany, Austria, Switzerland and Liechtenstein. To gain comprehensive data on its occurrence, we analysed diagnostic material from suspected BoDV-1-induced encephalitis cases based on clinical and/or histopathological diagnosis. BoDV-1 infection was confirmed by RT-qPCR in 207 domestic mammals, 28 humans and seven wild shrews. Thereby, this study markedly raises the number of published laboratory-confirmed human BoDV-1 infections and provides a first comprehensive summary. Generation of 136 new BoDV-1 genome sequences from animals and humans facilitated an in-depth phylogeographic analysis, allowing for the definition of risk areas for zoonotic BoDV-1 transmission and facilitating the assessment of geographical infection sources. Consistent with the low mobility of its reservoir host, BoDV-1 sequences showed a remarkable geographic association, with individual phylogenetic clades occupying distinct areas. The closest genetic relatives of most human-derived BoDV-1 sequences were located at distances of less than 40 km, indicating that spill-over transmission from the natural reservoir usually occurs in the patient´s home region.

¿Cuántas especies hay y cuál es el origen de las musarañas de dientes blancos (Eulipotyphla, Soricidae, Crocidurinae) de España y Portugal? Especies nativas, colonizadoras e introducidas: estado de la cuestión

The diversity of species in a given area at a given time is determined by its phylogeographic history and processes such as extinctions, colonizations, and introductions. Understanding this diversity requires integrating knowledge from disciplines such as biogeography, paleontology, zooarchaeology and historical ecology. This challenge becomes particularly complex when dealing with phylogenetically close species, with reserved habits and very similar morphologies, as is the case with white-toothed shrews (subfamily Crocidurinae). In this review, we compile and organize the existing information on this group of species in Spain and Portugal, paying special attention to the number of known species present and their origins.According to the most recent knowledge, there are currently seven species of white-toothed shrews in Spain and Portugal: one evolved in the Iberian Peninsula from Eurasian ancestors, Crocidura iculisma; one evolved in North Africa from African ancestors, Crocidura whitakeri; one evolved in the Canary Islands from an ancestor arriving from Africa, Crocidura canariensis; one arrived in the Peninsula from Africa during the Pleistocene, Crocidura russula; and three species whose accidental arrival occurred in historical times and was mediated by humans: Suncus etruscus, Crocidura gueldenstaedtii, and Crocidura pachyura. Additionally, S. etruscus and C. russula have recently been introduced to some of the islands.

Verifying the Diet of the Slender Racer, <i>Orientocoluber spinalis</i> (Peters, 1866), Rare, Threatened, and Endangered Across Northeast Asian Countries

Understanding the diet of a species provides important information on various aspects of its ecology. Diet studies are few on the reptile species, of which observation frequency is very low, due to the great difficulty of sampling. We investigated the diet of Orientocoluber spinalis, a long and slender small grassland snake with high rarity and a high extinction risk across northeast Asian countries, by applying regurgitated stomach content analysis and metabarcoding analysis using a developed O. spinalis blocking primer. Among 19 diet samples, which were mainly collected on islands along the west coast of the Korean Peninsula, we determined the food sources of 13 samples, which consisted of four small vertebrate species, the Tsushima smooth skink (Scincella vandenburghi), mountain grass lizard (Takydromus wolteri), Japanese keelback (Hebius vibakari), and lesser white-toothed shrew (Crocidura shantungensis). Among them, O. spinalis most frequently fed on S. vandenburghi (10 of 13 cases). Our results show that O. spinalis mainly forages small reptiles and mammals in grasslands adjoining to lowland forests and could be beneficial for conservation in the field and rearing of this vulnerable species in the facilities.

Detection of novel orthoparamyxoviruses, orthonairoviruses and an orthohepevirus in European white-toothed shrews.

While the viromes and immune systems of bats and rodents have been extensively studied, comprehensive data are lacking for insectivores (order Eulipotyphla) despite their wide geographic distribution. Anthropogenic land use and outdoor recreational activities, as well as changes in the range of shrews, may lead to an expansion of the human-shrew interface with the risk of spillover infections, as reported for Borna disease virus 1. We investigated the virome of 45 individuals of 4 white-toothed shrew species present in Europe, using metagenomic RNA sequencing of tissue and intestine pools. Moderate to high abundances of sequences related to the families Paramyxoviridae, Nairoviridae, Hepeviridae and Bornaviridae were detected. Whole genomes were determined for novel orthoparamyxoviruses (n=3), orthonairoviruses (n=2) and an orthohepevirus. The novel paramyxovirus, tentatively named Hasua virus, was phylogenetically related to the zoonotic Langya virus and Mòjiāng virus. The novel orthonairoviruses, along with the potentially zoonotic Erve virus, fall within the shrew-borne Thiafora virus genogroup. The highest viral RNA loads of orthoparamyxoviruses were detected in the kidneys, in well-perfused organs for orthonairoviruses and in the liver and intestine for orthohepevirus, indicating potential transmission routes. Notably, several shrews were found to be coinfected with viruses from different families. Our study highlights the virus diversity present in shrews, not only in biodiversity-rich regions but also in areas influenced by human activity. This study warrants further research to characterize and assess the clinical implications and risk of these viruses and the importance of shrews as reservoirs in European ecosystems.

Seed Availability and Small Mammal Populations: Insights from Mediterranean Forests

Plant–animal interactions play a crucial role in ecosystem functioning, especially through seed dispersal mechanisms. Understanding how small mammal populations respond to seed availability is essential for ecosystem management and biodiversity conservation, especially in the context of habitat loss and climate change. We conducted a 10-year study in mixed Mediterranean oak–beech forests to investigate the population dynamics of common small mammal species in response to seed availability. Our findings revealed distinct responses among species, influenced by life history traits, foraging behaviour, and diet. Wood mice (Apodemus sylvaticus) showed a rapid population increase with seed availability both in the same year of seed fall and the following year, suggesting a flexible foraging strategy and a dependence on arboreal seed producers. Yellow-necked mice (Apodemus flavicollis) revealed immediate population increases in response to seed availability in the autumn, probably because of their arboreal habits and preference for exploiting seeds prior to maturation. Bank voles (Clethrionomys glareolus) showed responses with population peaks in years following high seed availability, indicating a slower demographic response to resource abundance. Surprisingly, the greater white-toothed shrew (Crocidura russula) responded indirectly to seed availability in Mediterranean forests, suggesting complex interactions with seed-associated invertebrates or dependence on other variables not considered. Our findings highlight the importance of understanding how changes in seed availability influence the population ecology of small mammals, with significant implications for the conservation and management of Mediterranean forest ecosystems in the context of climate change and recurrent droughts. These results emphasise the need to consider species interactions, resource availability, and climate change in the conservation and management of evolving ecosystems.

Far away from home? Ancient DNA shows the presence of bicolored shrew (Crocidura leucodon) in Bronze Age Denmark.

An excavation of an Early Iron Age village near Aalborg in Denmark uncovered the jaws and skull fragments from a small mammal that were morphologically identified to the genus Crocidura (white-toothed shrews). Three Crocidura species are known from prehistoric continental Europe but none of them are distributed in Scandinavia, which is why this surprising finding warranted further analyses. The bone was radiocarbon-dated to 2840-2750 calibrated years before present (cal. BP), corresponding to the Late Bronze Age and hence earlier than the Iron Age archeological context in which it was found. Using highly optimized ancient DNA protocols, we extracted DNA from one tooth and shotgun-sequenced the sample to reconstruct a near-complete mitochondrial reference genome (17,317 bp, 32.6× coverage). Phylogenetic analyses determined this specimen as a bicolored shrew (Crocidura leucodon) but with a phylogenetic position basal to the clade of known sequences from this species. The confirmation of Crocidura presence in Denmark by the Late Bronze Age sheds new light on the prehistoric natural history of Scandinavia. We discuss the implications of this finding from both zoo-archeological and ecological perspectives. Furthermore, the mitochondrial genome reconstructed in this study offers a valuable resource for future research exploring the genetic makeup and evolutionary history of Eurasian shrew populations.

The first record of the white-toothed rock shrew from �pergrisea� complex (Mammalia: Soricidae: Crocidura) on the territory of Russian Federation

The first record of the white-toothed rock shrew from �pergrisea� complex (Mammalia: Soricidae: Crocidura) on the territory of Russian Federation

One Health in action: Investigation of the first detected local cluster of fatal borna disease virus 1 (BoDV-1) encephalitis, Germany 2022

BackgroundZoonotic Borna disease virus 1 (BoDV-1) causes fatal encephalitis in humans and animals. Subsequent to the detection of two paediatric cases in a Bavarian municipality in Germany within three years, we conducted an interdisciplinary One Health investigation. We aimed to explore seroprevalence in a local human population with a risk for BoDV-1 exposure as well as viral presence in environmental samples from local sites and BoDV-1 prevalence within the local small mammal population and its natural reservoir, the bicoloured white-toothed shrew (Crocidura leucodon). MethodsThe municipality's adult residents participated in an anonymised sero-epidemiological study. Potential risk factors and clinical symptoms were assessed by an electronic questionnaire. Small mammals, environmental samples and ticks from the municipality were tested for BoDV-1-RNA. Shrew-derived BoDV-1-sequences together with sequences of the two human cases were phylogenetically analysed. ResultsIn total, 679 citizens participated (response: 41 %), of whom 38 % reported shrews in their living environment and 19 % direct shrew contact. No anti-BoDV-1 antibodies were detected in human samples. BoDV-1-RNA was also undetectable in 38 environmental samples and 336 ticks. Of 220 collected shrews, twelve of 40 C. leucodon (30%) tested BoDV-1-RNA-positive. BoDV-1-sequences from the previously diagnosed two paediatric patients belonged to two different subclades, that were also present in shrews from the municipality. InterpretationOur data support the interpretation that human BoDV-1 infections are rare even in endemic areas and primarily manifest as severe encephalitis. Sequence analysis linked both previous paediatric human infections to the local shrew population, but indicated independent infection sources. FundingThe project was partly financed by funds of the German Federal Ministry of Education and Research (grant numbers: 01KI2005A, 01KI2005C, 01KI1722A, 01KI1722C, 01KI2002 to MaBe, DR, RGU, DT, BS) as well as by the ReForM-A programme of the University Hospital Regensburg (to MaBa) and by funds of the Bavarian State Ministry of Health, Care and Prevention, project “Zoonotic Bornavirus Focal Point Bavaria – ZooBoFo” (to MaBa, MaBe, BS, MMB, DR, PS, RGU).

Reassessment of the conservation status of Crocidura fingui, a shrew endemic to Príncipe Island, Gulf of Guinea

AbstractThe Fingui white-toothed shrew Crocidura fingui, categorized as Data Deficient on the IUCN Red List, is endemic to Príncipe Island, Central Africa. It is currently known from < 10 sites and its ecology and any threats are largely unknown. We review its distribution and ecology, and any potential threats, based on camera-trap data, field observations and previously published and unpublished sightings. Crocidura fingui appears to have an island-wide distribution and to use a range of ecosystems, from native forests to urban areas. It is largely nocturnal and exhibits considerable spatiotemporal overlap with introduced mammals such as the African civet Civettictis civetta, domestic cat Felis catus and rats Rattus spp. The species has an area of occupancy < 500 km2 and is known from fewer than five locations, and its population is inferred to be affected by several introduced mammals. We recommend that it is recategorized as Endangered on the IUCN Red List.

High diversity, novel genotypes, and vertical transmission of hemotropic Mycoplasma in micromammals

Hemotropic mycoplasmas (hemoplasmas) are emerging zoonotic pathogens. Micromammals have received little attention as hosts for hemoplasmas despite their ubiquitous presence, high population abundances, and close association with humans. A PCR protocol targeting a fragment of the 16 S rRNA gene and direct sequencing in blood samples of 189 adult specimens and 35 fetuses belonging to three species of Eulipotyphla (shrews) and seven species of Rodentia, captured in three ecologically diverse habitats in North-Eastern Spain (Steppe, High Mountain, Mediterranean) yielded and occurrence of 26%, including 36% of 39 shrews and 23% of 150 rodents. Sequencing revealed the presence of 14 nucleotide sequence types (ntST) among the 56 readable sequences. In general, each ntST was associated with a given host species, although in some cases, the same ntST was sequenced in different species (chiefly rodents). Most ntST were closely related to rodent and/or bat hemoplasmas, but one was identical with Mycoplasma haemocanis/haemofelis, and others can be considered novel genotypes. High sequence diversity was detected in rodents, whereas in the white-toothed shrew (Crocidura russula), 9/11 sequences from two distant areas were identical. Phylogenetic and network analyses classified our sequences in different clades including hemoplasmas of rodents, carnivores, bats, and humans. Twelve of the fetuses (34.2%) of 9/12 litters (75.0%) of shrews and rodents were hemoplasma-positive, indicating frequent vertical transmission. Our study contributes to expanding our knowledge about the distribution, diversity, and transmission of hemoplasmas.

Detection of hepatitis E virus genotype 3 in an Algerian mouse (Mus spretus) in Portugal

Virus monitoring in small mammals is central to the design of epidemiological control strategies for rodent-borne zoonotic viruses. Synanthropic small mammals are versatile and may be potential carriers of several microbial agents. In the present work, a total of 330 fecal samples of small mammals were collected at two sites in the North of Portugal and screened for zoonotic hepatitis E virus (HEV, species Paslahepevirus balayani). Synanthropic small mammal samples (n = 40) were collected in a city park of Porto and belonged to the species Algerian mouse (Mus spretus) (n = 26) and to the greater white-toothed shrew (Crocidura russula) (n = 14). Furthermore, additional samples were collected in the Northeast region of Portugal and included Algerian mouse (n = 48), greater white-toothed shrew (n = 47), wood mouse (Apodemus sylvaticus) (n = 43), southwestern water vole (Arvicola sapidus) (n = 52), Cabrera’s vole (Microtus cabrerae) (n = 49) and Lusitanian pine vole (Microtus lusitanicus) (n = 51). A nested RT-PCR targeting a part of open reading frame (ORF) 2 region of the HEV genome was used followed by sequencing and phylogenetic analysis. HEV RNA was detected in one fecal sample (0.3%; 95% confidence interval, CI: 0.01–1.68) from a synanthropic Algerian mouse that was genotyped as HEV-3, subgenotype 3e. This is the first study reporting the detection of HEV-3 in a synanthropic rodent, the Algerian mouse. The identified HEV isolate is probably the outcome of either a spill-over infection from domestic pigs or wild boars, or the result of passive viral transit through the intestinal tract. This finding reinforces the importance in the surveillance of novel potential hosts for HEV with a particular emphasis on synanthropic animals.

Fossil insectivorous mammals (Eulipotyphla) of the southern Pre-Urals (Bashkortostan, Russia)

Seven species of red-toothed shrews (Sorex araneus, Sorex isodon, Sorex tundrensis, Sorex caecutiens, Sorex minutus, Sorex minutissimus, Neomys fodiens), white-toothed shrews (Crocidura sp.), moles (Talpa sp.) and hedgehogs (Erinaceus sp.) were found in Late Pleistocene and Holocene deposits of the southern part of the western slope of the Ural Mountains. In the Late Pleistocene and Early Holocene deposits, the red-toothed shrews were dominated by S. tundrensis. This species disappeared from the area by the Late Holocene, when S. araneus became the predominant species. Smaller mandibular sizes have been registered for S. araneus in the Middle and Late Holocene, as compared to the sizes of older samples. The morphometric criteria have been established for a species differential diagnosis of the Late Pleistocene – Early Holocene mandibular samples of S. araneus and S. tundrensis, found in local deposits of the southern Pre-Urals area studied.

New Data on the Northern Limit of the Range and the Chromosomal Set of the Ussuri White-Toothed Shrew (Crocidura lasiura, Soricidae, Lipotyphla)

New Data on the Northern Limit of the Range and the Chromosomal Set of the Ussuri White-Toothed Shrew (Crocidura lasiura, Soricidae, Lipotyphla)

Shrew Communities in Mediterranean Agro-Ecosystems of Central Greece: Associations with Crop Types, Land Uses, and Soil Parameters.

Shrew communities play a crucial role in a diverse range of natural, urban, and agricultural ecosystems. We used Barn owl diet analysis as the ideal proxy to assess small-mammal distribution patterns on large spatial scales. More than 10,000 pellets were analyzed from Thessaly, the largest agricultural prefecture located in central Greece. A total of more than 29,000 prey items were identified, one of the largest datasets used in similar analyses in Europe. Three discrete shrew species were present in Thessaly agricultural plains, central Greece (Güldenstädt's shrew Crocidura gueldenstaedtii, Bi-coloured shrew Crocidura leucodon, and Pygmy white-toothed shrew Suncus etruscus), which comprised a total of 7452 shrews, representing 25.64% of the total small-mammals' dataset. C. gueldenstaedtii and S. etruscus demonstrated strong associations with heavy argillaceous-clay soils and Vertisol soil types, whereas S. etruscus was also associated with non-irrigated land and non-intensive cultivated plots. C. leucodon demonstrated no significant associations to any environmental gradient and demonstrated habitat plasticity, most possibly shaped by existing resources and competition. Our study highlights the important insights gained from Barn owl diet analysis in respect of small-mammal assemblages on broad geographical scales, and the inclusion of soil parameters as drivers of habitat suitability and distribution patterns for small-mammal responses.

Invasion of farmland hedgerows by non-native small mammals is associated with lower soil surface invertebrate diversity, abundance, body size and biomass

Small mammals in farmland hedgerows feed on soil surface invertebrates with non-native invasive species potentially affecting prey species and populations. We investigated terrestrial invertebrates using pitfall traps and leaf litter samples across four zones of invasion in Ireland: (1) native species only (wood mouse Apodemus sylvaticus and pygmy shrew Sorex minutus), (2) natives plus the non-native bank vole (Myodes glareolus), (3) natives plus the non-native greater white-toothed shrew (Crocidura russula) and (4) natives plus both. After accounting for regional and local environmental variation, small mammal invasion was associated with lower invertebrate species richness (9–39% lower than uninvaded zones), reduced abundance (18–56% lower), shorter arthropod body length (24–52% shorter) and lower arthropod biomass (63–89% lower). Negative effects were observed on a wide range of disparate functional groups spanning phytophagous, detritivorus, zoophagous and omnivorous taxa including: the Staphylinidae, Carabidae and Coleoptera larvae, Isopoda, Diplopoda, Diptera, Hymenoptera, Pulmonata and Acari. The greater white-toothed shrew had greater negative effects than the bank vole with presence of both having greater effects than either alone though the majority of their combined effects were largely attributable to the former. The bank vole may mitigate some of the negative effects of the greater white-toothed shrew on invertebrate abundance perhaps indicating of some form of trophic interaction. Predation of detritivores and large invertebrate predators may impact farmland ecosystem service delivery i.e. nutrient cycling and pest biocontrol. Hedgerow biodiversity loss may induce indirect trophic cascades negatively impacting other taxa including farmland birds.

Slow worms and greater white-toothed shrews sharing refuges

Slow worms and greater white-toothed shrews sharing refuges

First record of the greater white-toothed shrew, Crocidura russula, in the Czech Republic

First record of the greater white-toothed shrew, Crocidura russula, in the Czech Republic

A first attempt to track the genetic signature of colonization of the Mediterranean basin by the pygmy white-toothed shrew, Suncus etruscus (Eulipotyphla, Soricidae)

A first attempt to track the genetic signature of colonization of the Mediterranean basin by the pygmy white-toothed shrew, Suncus etruscus (Eulipotyphla, Soricidae)

Citizen science reveals the first occurrence of the greater white-toothed shrew Crocidura russula in Fennoscandia

Abstract The occurrence of the non-native, greater white-toothed shrew Crocidura russula in the Stavanger area in Southwestern Norway was brought to our attention by two records from the public (from 2012 and 2017). A citizen-science project, based on targeted media-calls between 2017 and 2019, resulted in 78 reported observations. A correct species identity, using photographs and collected specimen, was confirmed for 103 observations from 68 unique localities. Many of the sightings resulted directly from the media calls, but several were made both years before and after (ranging from 2012 to 2021). The minimum area of occurrence was 60 km long and 20 km wide and is characterised by one of the mildest climates in Norway. No clear expansion pattern was evident from the data, though an introduction between 2000 and 2010 seems likely. As only a few other shrew species were reported by the public, it is possible that the white-toothed shrew has outcompeted native shrews in the area. However, this could be biased by the nature of the media call or the commensal lifestyle of the shrew. Media calls beyond the area of occurrence did not result in any reports of the species. The introduction route and origin of the present population remain unclear.

White-Toothed Shrews (Genus Crocidura): Potential Reservoirs for Zoonotic Leptospira spp. and Arthropod-Borne Pathogens?

Three species of white-toothed shrews of the order Eulipotyphla are present in central Europe: the bicolored (Crocidura leucodon), greater (Crocidura russula) and lesser (Crocidura suaveolens) white-toothed shrews. Their precise distribution in Germany is ill-defined and little is known about them as reservoirs for zoonotic pathogens (Leptospira spp., Coxiella burnetii, Brucella spp., Anaplasma phagocytophilum, Babesia spp., Neoehrlichia mikurensis and Bartonella spp.). We investigated 372 Crocidura spp. from Germany (n = 341), Austria (n = 18), Luxembourg (n = 2) and Slovakia (n = 11). West European hedgehogs (Erinaceus europaeus) were added to compare the presence of pathogens in co-occurring insectivores. Crocidura russula were distributed mainly in western and C. suaveolens mainly in north-eastern Germany. Crocidura leucodon occurred in overlapping ranges with the other shrews. Leptospira spp. DNA was detected in 28/227 C. russula and 2/78 C. leucodon samples. Further characterization revealed that Leptospira kirschneri had a sequence type (ST) 100. Neoehrlichia mikurensis DNA was detected in spleen tissue from 2/213 C. russula samples. Hedgehogs carried DNA from L. kirschneri (ST 100), L. interrogans (ST 24), A. phagocytophilum and two Bartonella species. This study improves the knowledge of the current distribution of Crocidura shrews and identifies C. russula as carrier of Leptospira kirschneri. However, shrews seem to play little-to-no role in the circulation of the arthropod-borne pathogens investigated.