White-tailed Deer Research Articles

Navigating motherhood: biological and landscape factors affecting postpartum movement in white-tailed deer

BackgroundPopulation growth and management in cervid species is dependent on reproductive ecology and factors influencing juvenile survival. Aspects of the female’s movement behavior likely affect juvenile survival and movement patterns of pregnant and lactating females differ from non-pregnant or non-lactating females. Explanations for these differing movement patterns include change in nutritional demands for the female, isolation during parturition, and predator avoidance. White-tailed deer (Odocoileus virginianus) are an important managed cervid and a better understanding of their reproductive ecology, including the relationships between resources, movement, and juvenile survival, can better inform management.MethodsOur objective was to determine if biological factors, such as female age, fawn age, number of fawns, as well as characteristics of prepartum range affected the female’s postpartum daily movement or overlap of space used pre- and postpartum in Sussex County, Delaware, USA (2,420 km2). We collected GPS locations 2 weeks pre- and postpartum on 22 individual females from 2016 to 2017. In total, we recorded data from 263 days of postpartum movement for an average of 12 days/individual. We used a hierarchical modeling process to test biological factors and prepartum home range characteristics on two aspects of postpartum movement behavior, mean hourly displacements and daily use of prepartum home range.ResultsMean hourly displacement decreased with increased female age and increased with number of known fawns alive and the female’s home range size prior to parturition. We found that as fawns aged the doe increased use of the prepartum home range.ConclusionsOur results indicate that younger females are moving more than older females during lactation potentially to access higher quality habitat. This increased movement increases nutritional demand and may play a role in fawn survival. Females are more likely to use more of their prepartum home range as fawns age, a finding congruent with previous research. This differentiation in metric response (movement rate vs. space use) emphasizes the complexities of movement ecology and the importance of considering multiple dependent variables for complex behavior.

Low Prevalence of SARS-CoV-2 in Farmed and Free-Ranging White-Tailed Deer in Florida

Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) has been detected in multiple animal species, including white-tailed deer (WTD), raising concerns about zoonotic transmission, particularly in environments with frequent human interactions. To understand how human exposure influences SARS-CoV-2 infection in WTD, we compared infection and exposure prevalence between farmed and free-ranging deer populations in Florida. We also examined the timing and viral variants in WTD relative to those in Florida’s human population. Between 2020 and 2022, we collected respiratory swabs (N = 366), lung tissue (N = 245), retropharyngeal lymph nodes (N = 491), and serum specimens (N = 381) from 410 farmed and 524 free-ranging WTD. Specimens were analyzed using RT-qPCR for infection and serological assays for exposure. SARS-CoV-2 infection was detected in less than 1% of both northern Florida farmed (0.85%) and free-ranging (0.76%) WTD. No farmed deer possessed virus-neutralizing antibodies, while one free-ranging WTD tested positive for SARS-CoV-2 antibodies (3.45%). Viral sequences in infected WTD matched peaks in human cases and circulating variants, indicating human-to-deer spillover but at a lower frequency than reported elsewhere. Our findings suggest a reduced risk of SARS-CoV-2 spillover to WTD in northern Florida compared to other regions, highlighting the need for further research on transmission dynamics across North America.

Exosomal Micro RNA Isolation in White-Tailed Deer (Odocoileus virginianus) for Diagnostic Biomarker Discovery.

Molecular approaches are becoming more prevalent for the diagnosis of neurodegenerative diseases in human medicine and can be extended to diagnosis of wildlife diseases such as chronic wasting disease and other prion diseases. These diseases have been associated with exosome-bound molecular biomarkers of disease progression, such as proteins and micro RNA molecules (miRNA). We tested and optimized a method for exosomal miRNA isolation from minimally invasive, small-volume serum samples obtained from white-tailed deer (Odocoileus virginianus). We confirmed the isolation of exosomes and optimized a commercially available benchtop kit to obtain sufficient and pure RNA for miRNA sequencing. The selected method for RNA extraction combines two 500-μL serum aliquots into one elution column and re-eluting the final product of the column. We identified 137 miRNA present in healthy white-tailed deer that can be used as a baseline to identify putative miRNA biomarkers of disease progression and mechanisms of infection in future comparative disease studies. This approach to biomarker discovery may help to inform biological processes in wildlife populations and provide alternatives to invasive or postmortem samples.

Comparison of Butorphanol-Azaperone-Medetomidine and Nalbuphine-Medetomidine-Azaperone for Immobilization of White-Tailed Deer (Odocoileus virginianus).

Butorphanol-azaperone-medetomidine (BAM) is commonly used for white-tailed deer (Odocoileus virginianus) immobilization in captive and free-ranging populations. It is a federally regulated controlled substance requiring stringent regulatory compliance, complicating field application. A prescription-only drug combination, nalbuphine-medetomidine-azaperone® (NalMed-A) provides a less-regulated alternative for use by wildlife professionals. Efficacy and safety of these drug combinations for immobilization of deer have not been compared in a controlled trial, and reports of dose-specific effects of NalMed-A on white-tailed deer physiology are lacking. Additionally, residual effects of these drugs on deer behavior, food consumption, and stress response have not been reported. In February through April 2021, we immobilized 30 captive female, adult white-tailed deer in three treatment groups (n=10 each). Hand-injected doses were 1.5 mL BAM intramuscularly (IM; 41.0 mg butorphanol, 13.6 mg azaperone, 16.4 mg medetomidine), 1.5 mL NalMed-A IM (60.0 mg nalbuphine, 15.0 mg medetomidine, 15.0 mg azaperone), and 2.0 mL NalMed-A IM (80.0 mg nalbuphine, 20.0 mg medetomidine, 20.0 mg azaperone). We compared quality of immobilizations and reversals and times to induction and reversal among treatments, collected biological samples to measure stress hormones and blood gases, and conducted observations to determine treatment-related variations in behaviors. When an effective dose was administered, both BAM and NalMed-A produced rapid and smooth immobilization and recovery after reversal. All treatments in combination with manual restraint caused some degree of hyperthermia, hypoxemia, hypercarbia, bradycardia, respiratory and metabolic acidosis, and elevated lactate and serum cortisol. At 60 d, all deer were still alive, with no apparent residual effects. Vital signs of deer exposed to manual restraint and these drug combinations should be monitored closely, with supportive therapy provided when needed. We suggest BAM and NalMed-A are safe for immobilizing deer in situations similar to our trials, although doses may perform differently in deer remotely injected without manual restraint.

Spatiotemporal occupancy patterns of chronic wasting disease.

Chronic wasting disease (CWD) among cervids in Kansas has seen a consistent rise over the years, both in terms of the number of infections and its geographical spread. In this study, we assessed the occupancy patterns of CWD among white-tailed deer and mule deer across the state. Using surveillance data collected since 2005, we applied a dynamic patch occupancy model within a Bayesian framework, incorporating various environmental covariates. Using principal components analysis, 13 fully orthogonal components representing cervid habitat, soil, and elevation were derived. Competing models with different temporal patterns were fit, and the best model selected based on Watanabe-AIC values and AUC value of 0.89. The occupancy pattern produced by this model revealed a steady progression of the disease toward the east and southeast of the state. A random forest analysis of covariates at annual intervals indicated that geographic location, elevation, areas occupied by mixed forests, and several soil attributes (pH, clay content, depth to restrictive layer, available water content, and bulk density) explained most of the variability in the surveillance data (R 2 = 0.96). The findings reported in this study are the first for the state of Kansas but are consistent with previous findings from other geographic jurisdictions in the US and Canada. This consistency underscores their value in designing surveillance and management programs.

Use of biosecurity practices to prevent chronic wasting disease in Minnesota cervid herds

The objective of this study was to evaluate biosecurity practices related to chronic wasting disease (CWD) transmission pathways and prevention in active cervid herds in Minnesota in 2019 by species, size and location of herds. A self-administered questionnaire was sent to all cervid producers in Minnesota to gather demographic, management, and biosecurity practices. Among producers (N=136), 63.2 % raised predominantly deer species and 36.8 % raised predominantly elk or reindeer. Survey responses were analyzed by herd species (deer or elk/reindeer), herd size (<20 or ≥20 animals), and location (southeast Minnesota or rest of the state) to determine statistical differences between strata. In terms of CWD transmission risks from other farmed cervids, 40.4 % (95 % Confidence Intervals (CI) 32.1–48.8) of Minnesota producers stated they introduced new cervids to the operation in the previous 3 years, though there were minimal other forms of direct contact. A higher percentage of larger sized elk/reindeer herds reported practices that indicate potential for indirect contact with other farmed cervids. Vehicles or trailers that entered the farm were used to transport other live cervids, cervid carcasses, or cervid body parts in past 3 years in 64.3 % (95 % CI 46.3–82.3) of larger elk/reindeer herds compared to 13.6 % (95 % CI 4.7–22.4) of smaller deer herds.For CWD transmission risks from wild cervids, limited potential direct contact was reported. Among all producers, 9.6 % (95 % CI 4.6–14.6) reported farmed cervid escapes in the past 3 years (even temporarily) and 0.7 % (95 % CI 0.0–2.2) of producers reported wild white-tailed deer (WTD) inside perimeter fencing. Additionally, 24.3 % (95 % CI 17.0–31.6) of producers observed wild WTD near the perimeter fencing in the past 12 months and 18.7 % (95 % CI 12.0–25.3) reported use of double perimeter fencing, indicating frequent proximity to wild deer and potential for direct and/or indirect contact exposures. Further, 14.3 % (95 % CI 6.7–21.9) of deer herds and 30.0 % (95 % CI 17.1–42.9) of elk herds reported potential access of wild cervids to hay/silage while stored on the farm, with similar results comparing smaller and larger size strata (13.8 % (95 % CI 6.1–21.4) and 29.6 % (95 % CI 17.3–42.0), respectively). Contact through hunting or taxidermy practices occurred infrequently, with the exception of 20.1 % (95 % CI 13.3–27.0) of producers reporting bringing outside hunted cervid parts/carcasses onto property in the past 3 years.Overall, results identified direct and indirect contact exposures from both farmed and wild cervids to Minnesota herds, with many producers reporting potential contact with wild cervids through direct and multiple indirect pathways. Many of these indirect exposures to wild and farmed cervids varied by herd size and species strata. Better understanding of these potential CWD transmission pathways and how differences between herd size and species affect these pathways will facilitate development of more effective biosecurity programs for cervid herds.

Comparative study of immunoassays, a microelectromechanical systems-based biosensor, and RT-QuIC for the diagnosis of chronic wasting disease in white-tailed deer

BackgroundChronic wasting disease (CWD) is a fatal transmissible spongiform encephalopathy in cervids. The disease is caused by a pathogenic prion, namely PrPSc. Currently, diagnosis of CWD relies on IHC detection of PrPSc in the obex or retropharyngeal lymph nodes (RPLN) or ELISA screening of obex and RPLN followed by IHC confirmation of positive results. In this study, we assessed the performance characteristics of two immunoassays: CWD Ag-ELISA and TeSeE ELISA, RT-QuIC, and MEMS biosensor via testing 30 CWD + and 30 CWD- white-tailed deer RPLN samples.ResultsBoth CWD Ag-ELISA and TeSeE ELISA correctly identified all CWD + and CWD- samples. A greater intra-assay coefficient of variation (CV) in S/P ratios was observed for the TeSeE ELISA (16.52%), compared to CWD Ag-ELISA (9.49%). However, the high CV did not affect the qualitative results of triplicate assays when the corresponding manufacturer’s cutoff was used. The MEMS biosensor not only correctly identified all CWD + and CWD- RPLN samples, but also demonstrated a 100% detection rate for all CWD + samples at dilutions from 10− 0 to 10− 3. Evaluation of RT-QuIC indicated that the rate of false negative reactions decreased from 21.98% at 10− 2 dilution to 0% at 10− 4 and 10− 5 dilutions; and the rate of false positive reactions reduced from 56.42% at 10− 2 dilution to 8.89% and 2.22% at 10− 4 and 10− 5 dilutions, respectively. Based on a stringent threshold of 2 x the first 10 fluorescent readings of each well and a final cutoff of 2/3 positive reactions for each sample, RT-QuIC correctly identified all positive and negative samples at 10− 4 and 10− 5 dilutions. Both MEMS biosensor and RT-QuIC achieved 100% sensitivity and 100% specificity under the experimental conditions described in this study.ConclusionsThe two immunoassays (CWD Ag-ELISA and TeSeE ELISA) performed comparably on white-tailed deer RPLN samples. MEMS biosensor is a reliable portable tool for CWD diagnosis and RT-QuIC can be used for routine testing of CWD if appropriate testing parameters and interpretive criteria are applied.

Molecular Characterization of Ostertagia mossi and Ostertagia dikmansi from White-tailed Deer (Odocoileus virginianus) Confirms They Are the Same Species.

To examine whether Ostertagia mossi and Ostertagia dikmansi from white-tailed deer (Odocoileus virginianus) are separate species, we obtained DNA sequences for the cytochrome C oxidase subunit I and internal transcribed spacer 2 gene targets for phylogenetic analyses. Neither target revealed separation between morphotypes, confirming they are the same species and providing new data on Ostertagia morphotypes.

Estimation of Contact Time Among Animals from Telemetry Data

Continuous processes in most applications are measured discretely with error. This complicates the task of detecting intersections and the number of intersections between two continuous processes (i.e., when the processes have the same value). Intersections of continuous processes are scientifically important, but challenging to estimate from data. For example, in the field of animal ecology, intersections of the paths of moving animals tracked with satellite technologies can be used to understand disease transmission. We illustrate how to quantify contact between animals using telemetry data (i.e., the recorded locations of an animal over time). We introduce our method to quantify contact time with accessible concepts from introductory stochastic process literature, such as Brownian motion. Then, we provide two data examples using white-tailed deer (Odocoileus virginianus) and mule deer (Odocoileus hemionus) telemetry data in a region with high prevalence of chronic wasting disease. Our work provides a needed connection between existing model-based literature for animal movement and rule-based literature for animal interaction. Further, our work illustrates a unique statistical problem receiving minimal attention with broad applicability in human and livestock tracking. Supplementary materials for this article are available online.

Wolf Predation on White-tailed Deer Before, During, and After a Historically Mild Winter in Northern Minnesota.

In many southern boreal ecosystems of North America, wolves are the primary predators of white-tailed deer, and white-tailed deer are the primary prey of wolves. Furthermore, wolf-deer systems have and will continue to become more common as white-tailed deer range continues expanding northward in North America. Despite this, there is little information on kill rates of wolves on deer (i.e., the number of deer killed per wolf per unit of time)-a fundamental metric of wolf predation on deer-and how kill rates vary with deer density, wolf density, and environmental conditions. We estimated kill rates of wolves on deer before, during, and after a historically mild winter in the Greater Voyageurs Ecosystem, Minnesota, USA. Kill rates of wolves on deer were low (0.009-0.018 deer/wolf/day) in fall, peaked in February (0.050 deer/wolf/day), and quickly declined to 0 deer/wolf/day by April. The kill rates of wolves on deer we observed in winter were some of the lowest kill rates of wolves on deer that have been documented. Wolves in the Greater Voyageurs Ecosystem appeared unable to catch and kill a sufficient number of deer to meet their daily energetic requirements during Winter 2023-2024, and thus most wolves likely lost weight during winter, a period when wolves are typically in peak physical condition. The rates of wolf predation we observed appeared to be well below those needed to decrease deer population density in the GVE. Thus, our work, in combination with numerous other studies, indicates winter conditions are the primary driver of deer population change in northern climates.

An Updated Framework for Modeling White-Tailed Deer (Odocoileus virginianus) Habitat Quality in Illinois, USA.

White-tailed deer (Odocoileus virginianus) are a cervid species found mostly in the Americas. Managing white-tailed deer requires understanding their relationship with the environment, which was characterized by Roseberry and Woolf (Wildlife Society Bulletin 1, 1998, 252) for all counties in Illinois, USA, who incorporated habitat quantity and quality in a deer habitat suitability index. However, this index was based on satellite imagery from 1996 and did not explore the smaller spatial scales used by deer. Our study addressed these gaps by developing a deer land cover utility (LCU) score for each TRS (township, range, and section), township, and county in Illinois based on the methodology outlined in Roseberry and Woolf (Wildlife Society Bulletin 1, 1998, 252) but using data from the National Land Cover Database (2001-2021). These deer LCU scores were validated against minimum deer population data using Bayesian regression with additional covariates relevant to hunting and deer density. These models performed well with Bayesian R 2 values of 0.501 (TRS), 0.5 (township), and 0.969 (county). The regression coefficients for the deer LCU scores were statistically significant (95% credibility interval not containing 0) and positive at the TRS, township, and county levels, reflecting the expected relationship between minimum deer density and deer LCU. Predictions made by these regression models on new data were accurate, with the median absolute difference between the true and predicted values being 0.398 deer/km2 for TRS', 0.085 deer/km2 for townships, and 0.066 deer/km2 for counties. This deer LCU could be used in other studies about deer in Illinois or studies in which deer are a relevant factor such as investigations about deer disease or tick distribution. This modeling approach could also be adapted to different wild species, locations, and/or time periods for which land cover data is available.

Facts about Wildlife Diseases: Warts in White-tailed deer (Cutaneous Fibromas).

Deer warts, or cutaneous fibromas, are skin tumors caused by papillomavirus infection that affect white-tailed deer and other deer. These growths are generally benign, but in rare cases may proliferate and impede functions like sight, movement, or feeding. Deer immune systems usually eradicate the infection over time. Found exclusively on the skin, usually around the eyes, neck, face, and forelegs, warts may be diverse in appearance and size, ranging from small fleshy nodules to larger, pendulous masses or clusters. Transmission mechanisms are suspected to involve skin contact or possibly insect vectors but remain unclear. Diagnosis is by visual examination and histopathological analysis of the wart tissue. Wild deer populations usually do not require treatment, but surgical removal is an option for captive herds. Vaccine development remains plausible but has not yet been pursued extensively.

Variation in white‐tailed and mule deer dental metrics is associated with precipitation gradients in the Americas

AbstractInvestigating the relationship between the physical environment and organismal adaptation is crucial to understanding the selective pressures that drive mammalian evolution. Of the varied approaches to exploring this relationship, macroscopic tooth wear analyses have become widely used due to their economic and simple methodologies. However, more work is needed to understand how assessments of wear patterns operate within finer levels of dietary and environmental contexts. It is specifically unclear if and how tooth wear differs inter‐ and intraspecifically between geographically widespread, large‐bodied mammalian populations. This project characterizes molar hypsodonty indices and mesowear scores of white‐tailed deer (Odocoileus virginianus) and mule deer (Odocoileus hemionus) populations across North and Central America, investigating if and how molar wear and morphology vary over the deer's large and ecologically variable geographic distribution. While mesowear scores generally do not strongly track environmental signals within and between Odocoileus species, hypsodonty indices reveal a strong correlation between crown height and aridity, which likely represents an adaptive response to abrasive diets in areas with low precipitation.

Insights into archaeological and modern neotropical biomes: Examining diet and shape variation through white-tailed deer lower third molar

The white-tailed deer (Odocoileus virginianus Zimmermann 1780) holds significant ecological importance across the Americas, both historically and in modern times. This species ranges from southern Canada to Brazil and exhibits polytypic characteristics, adapting well to diverse habitats including temperate, subtropical, semi-arid, rainforest, and savanna environments. In paleontology and archaeology, the comparison of dental characteristics between extant mammal species with known diets is commonly employed to infer the feeding behaviors of their ancient counterparts. This method assumes that extant and fossil species share similar dietary preferences, aiding in the identification of past environmental contexts. Consequently, we employed a multiproxy approach, combining the study of dental wear and 2D geometric morphometrics, to investigate potential relationships between molar shape, diet, and biomes among extant white-tailed deer populations across the Americas. Our analysis included a comparison with archaeological data from Panama. We sampled 274 extant lower second molar specimens for micro- and mesowear analysis, along with 105 lower third molar specimens from natural science museums for 2D geometric morphometric analysis. These were compared with a sample of 65 archaeological specimens from Panama. Our findings revealed distinct variations in the shape of lower m3 molars among extant white-tailed deer populations across different biomes, with notable differences observed in the archaeological samples as well. Micro- and mesowear analyses also indicated biome-related differences, suggesting a general browsing diet for white-tailed deer with nuanced variations across biomes. Mesowear analysis further suggested a dietary spectrum ranging from pure browsers to browser-mixed feeders. These findings offer valuable insights for the interpretation of fossil deer specimens recovered from archaeological sites.

SARS-CoV-2 within-host population expansion, diversification and adaptation in zoo tigers, lions and hyenas.

SARS-CoV-2 rapidly adapts to new hosts following cross-species transmission; this is highly relevant as novel within-host variants have emerged following infection of susceptible wild and domestic animal species. Furthermore, SARS-CoV-2 transmission from animals (e.g., white-tailed deer, mink, domestic cats, and others) back to humans has also been observed, documenting the potential of novel animal-derived variants to infect humans. We investigated SARS-CoV-2 evolution and host-specific adaptation during an outbreak in Amur tigers (Panthera tigris altaica), African lions (Panthera leo), and spotted hyenas (Crocuta crocuta) at Denver Zoo in late 2021. SARS-CoV-2 genomes from longitudinal samples collected from 16 individuals were evaluated for within-host variation and genomic signatures of selection. The outbreak was likely initiated by a single spillover of a rare Delta sublineage subsequently transmitted from tigers to lions to hyenas. Within-host virus populations rapidly expanded and diversified. We detected signatures of purifying and positive selection, including strong positive selection in hyenas and in the nucleocapsid (N) gene in all animals. Four candidate species-specific adaptive mutations were identified: N A254V in lions and hyenas, and ORF1a E1724D, spike T274I, and N P326L in hyenas. These results reveal accelerated SARS-CoV-2 adaptation following host shifts in three non-domestic species in daily contact with humans.

Cryo-EM structure of a natural prion: chronic wasting disease fibrils from deer

Chronic wasting disease (CWD) is a widely distributed prion disease of cervids with implications for wildlife conservation and also for human and livestock health. The structures of infectious prions that cause CWD and other natural prion diseases of mammalian hosts have been poorly understood. Here we report a 2.8 Å resolution cryogenic electron microscopy-based structure of CWD prion fibrils from the brain of a naturally infected white-tailed deer expressing the most common wild-type PrP sequence. Like recently solved rodent-adapted scrapie prion fibrils, our atomic model of CWD fibrils contains single stacks of PrP molecules forming parallel in-register intermolecular β-sheets and intervening loops comprising major N- and C-terminal lobes within the fibril cross-section. However, CWD fibrils from a natural cervid host differ markedly from the rodent structures in many other features, including a ~ 180° twist in the relative orientation of the lobes. This CWD structure suggests mechanisms underlying the apparent CWD transmission barrier to humans and should facilitate more rational approaches to the development of CWD vaccines and therapeutics.

Enhanced detection of chronic wasting disease in muscle tissue harvested from infected white-tailed deer employing combined prion amplification assays.

Zoonotic transmission of bovine spongiform encephalopathy or mad cow disease, by presumed consumption of infected beef, has increased awareness of the public health risk associated with prion diseases. Chronic wasting disease (CWD) affects moose, elk, and deer, all of which are frequently consumed by humans. Clear evidence of CWD transmission to humans has not been demonstrated, yet, establishing whether CWD prions are present in muscle tissue preferentially consumed by humans is of increasing interest. Conventional assays including immunohistochemistry (IHC) and enzyme-linked immunosorbent assay (ELISA) lack the sensitivity to detect low concentrations of prions presumed to be present outside neural or lymphatic tissues. Here we combined two prion amplification assays, the product of protein misfolding cyclic amplification (PMCA) applied directly into real-time quaking induced conversion (RT-QuIC) [denoted now as PQ] to demonstrate the presence of prion seeding activity (i.e. prions) in ~55% of hamstring muscles harvested from CWD-positive white-tailed deer. This compares to prion detection in only 10% of the same samples employing standard RT-QuIC. To determine the extent of CWD dissemination within muscle tissues commonly consumed we tested 7 additional muscles from a subset of deer by PQ. Tongue demonstrated the highest level of prions with ~92% positive. All negative controls remained negative in all PMCA and RT-QuIC assays. We conclude that the combination of PMCA with RT-QuIC readout permits detection of low prion concentrations present in muscle tissue of CWD-infected deer. These findings further demonstrate the utility of amplification assays as tools to detect very low levels of prion burden and supports their use to fill knowledge gaps in our understanding of CWD pathogenesis and zoonotic potential.

Spatiotemporal responses of ungulates to hunting in a fenced multi-use area

Context Human activities, such as tourism and hunting, affect the spatiotemporal behaviour of wildlife. For example, it is well documented that ungulates change their spatiotemporal behaviour as a response to hunting pressure, but less is known about ungulate responses to hunting in areas where human activity is common throughout the year and ungulates are constrained by fences. Aims In this camera-trap study, we analysed the change in spatiotemporal behaviour of wild ungulates (elk, Cervus canadensis (3519 events), moose, Alces alces (1153 events), and white-tailed deer, Odocoileus virginianus (2708 events)) in response to the hunting period in a recreational and fenced park, the Cooking Lake–Blackfoot Provincial Area, Canada. Methods We used general linear models to compare species-specific patterns of intensity of use, calculated as events per week, in response to changes in the nature of human disturbance, namely a shift from recreation to hunting activity. In particular, we compared intensity of use in and out of the hunting season to determine whether species engaged in spatial patterns of avoidance with respect to hunting. We used daily and seasonal patterns of activity to determine how ungulates shifted their temporal use in response to hunting activity and whether they became more nocturnal as a result. Key results We found that ungulates responded temporally to the hunting period by generally shifting their activity to more nocturnal hours, with white-tailed deer showing the biggest temporal shift, suggesting that the ungulates distinguish between consumptive and non-consumptive human activities. Nevertheless, temporal overlap between humans and all ungulate species increased during the hunting period as humans targeted times of increased ungulate activity. Spatially, the response was less distinctive and was species-specific. Elk showed little change in spatial behaviour in response to the hunting period. In contrast, moose decreased the use of trail areas and other areas frequented by humans, whereas deer, counterintuitively, increased the use of trail areas, albeit their use became much more nocturnal. Conclusions We have shown that responses of ungulates to hunting exceed those to non-consumptive recreational use, and whereas temporal responses (increased nocturnality) were consistent across ungulate species, spatial responses were species-specific. Implications Management in small fenced multi-use areas needs to account for shifts in the intensity of disturbance resulting from a change in human disturbance from recreational activity to hunting. Providing spatial opportunities for avoidance of humans is key for most species if hours of operation in these areas already limit the timing of human activity.

Study on sentinel hosts for surveillance of future COVID-19-like outbreaks

The spread of SARS-CoV-2 to animals has the potential to evolve independently. In this study, we distinguished several sentinel animal species and genera for monitoring the re-emergence of COVID-19 or the new outbreak of COVID-19-like disease. We analyzed SARS-CoV-2 genomic data from human and nonhuman mammals in the taxonomic hierarchies of species, genus, family and order of their host. We find that SARS-CoV-2 carried by domestic dog (Canis lupus familiaris), domestic cat (Felis catus), mink (Neovison vison), and white-tailed deer (Odocoileus virginianus) cluster closely to human-origin viruses and show no differences in the majority of amino acids, but have the most positively selected sites and should be monitored to prevent the re-emergence of COVID-19 caused by novel variants of SARS-CoV-2. Viruses from the genera Panthera (especially lion (Panthera leo)), Manis and Rhinolophus differ significantly from human-origin viruses, and long-term surveillance should be undertaken to prevent the future COVID-19-like outbreaks. Investigation of the variation dynamics of sites 142, 501, 655, 681 and 950 within the S protein may be necessary to predict the novel animal SARS-CoV-2 variants.

Effective Field Sampling of Rectoanal Mucosa-Associated Lymphoid Tissue for Antemortem Chronic Wasting Disease Testing in White-tailed Deer (Odocoileus virginianus).

Chronic wasting disease (CWD) is a fatal prion disease of cervids that has spread across much of North America. Although gold standard CWD diagnostics involve postmortem testing of medial retropharyngeal lymph nodes or obex (brain stem), a key tissue sample for antemortem testing is rectoanal mucosa-associated lymphoid tissue (RAMALT). However, collection of an adequate sample (i.e., enough lymphoid follicles) may be affected by factors such as deer age, repeated sampling, skill of the sampler, and adverse conditions during collection. Here, we document the protocol used to train personnel for RAMALT collection in a large study of free-ranging white-tailed deer (Odocoileus virginianus) in Wisconsin, USA, and determine factors that contributed to the occurrence of inadequate RAMALT samples. Our training protocol included hands-on experience with postmortem tissues, as well as a mentored collection process in the field. Collection of RAMALT under field conditions was highly successful, with 763/806 (94.7%) samples deemed adequate for subsequent testing. Although inadequate samples were rare, they were more likely to occur with older deer and when samples were collected at dusk (i.e., limited ambient lighting). We conclude that RAMALT collection can be highly successful under adverse field conditions, including with technicians with limited prior veterinary experience, and we provide details of our training program to facilitate repeatability in other antemortem CWD testing efforts.