Whale Blow Research Articles

Ship-based RPA operations for cetacean research in Antarctica: progress, opportunities and challenges

Data collection facilitated by remotely piloted aircraft (RPA) has proven to be revolutionary in many disciplines including for research in extreme environments. Here we assess current use and utility of small multirotor remotely piloted aircraft (RPAs) for the challenging role of facilitating ship-based cetacean research in Antarctica. While such aircraft are now used routinely in sheltered environments in and off Antarctica, a comprehensive literature review found that RPA-mediated cetacean research conducted from ships at sea and outside of the Antarctic Peninsula region was relatively uncommon. In order to determine the potential utility of ship-based multirotor RPA operations for cetacean research, we repeatedly deployed small RPAs during a multidisciplinary research voyage in maritime East Antarctica to collect scientific data contributing to an understanding of krill and krill predator interactions. RPA flight metrics (duration, height, length, speed, distance from ship, battery drainage, satellites acquired) were compared to ship underway environmental sampling data. At a mean duration of 12 minutes, these 139 RPA flights were relatively short yet adequate to achieve the science intended, namely a range of cetacean related data streams including photogrammetry, photo identification, behavioural observations and whale blow sampling in addition to water sampling and collection of general scenic imagery. RPA flight operations were constrained by wind speed but not by air temperature with flights undertaken throughout the full range of air temperatures experienced (down to –9.5°C) but not throughout the full range of wind speeds experienced. For a 12-minute flight duration, battery drainage was around 60% indicating that the RPAs were rarely pushed to their operational limit. There was little evidence that the cold impacted RPA lithium battery performance with estimated maximum flight time within approximately 10% of expected flight time for the RPA platforms most used. Whist small multirotor RPAs are rarely applied to cetacean related research in maritime East Antarctica, we demonstrate their value and potential to deliver data critical to address knowledge gaps that challenge the effective management of both krill and their predators.

Surfacing rates, swim speeds, and patterns of movement of Antarctic blue whales

During three surveys in the austral summers of 2013, 2015, 2019, data on Antarctic blue whale blow rates, dive times, swim speeds, and broadscale movements were collected using video photogrammetric tracking and intra-voyage photo-identification. A total of 24.4 hours of video observations were suitable for blow interval or movement analysis. Similar to other blue whale populations, Antarctic blue whale dive behaviour comprised a sequence of short dives followed by a long dive with a mean dive time for short dives of 17.6 s, and a mean long dive time of 189.3 s. Two separate methods were used to estimate the average blow rate for Antarctic blue whales, giving estimates of 59.7 and 63.2 blows per hour. The overall mean swim speed over the course of all suitable video track segments was 1.59 ms-1, but there were significant differences between years in the mean of the overall movement rate for each track; average movement rates were lower in 2015 compared to 2013 and 2019 (0.90 ms-1, 1.84 and 1.55 ms-1respectively), with higher rates of turning in 2015. In 2019, there was faster overall movement through the study area in a consistent direction. The total number of photo-identified blue whales re-sighted intra-season in 2013 was nine (out of 50 identified individuals); in 2015 it was seven (out of 46); in 2019 two (out of 25). Whales remained for several days with little overall movement within the 2015 study area, whereas they were moving through the study area in 2019, which would explain the low number of intra-season resights. The predominant heading in 2019 was towards the area of Antarctic blue whale concentrations at the entrance to the Ross Sea observed in previous years. The photo-identification data also show a high proportion of resighted whales with coherent movements. This suggests that Antarctic blue whales might travel together, at least over periods of several days or sometimes up to a month. The differences between behaviours in 2015 and 2019 in particular may be related to differences in the characteristics of krill swarms between the study areas.

Blowing in the Wind: Using a Consumer Drone for the Collection of Humpback Whale (Megaptera novaeangliae) Blow Samples during the Arctic Polar Nights

Analysis of cetacean blow offers a unique potential for non-invasive assessments of their health. In recent years, the use of uncrewed aerial vehicles (UAVs) has revolutionized the way these samples are collected. However, the high cost and expertise associated with purpose-built waterproof UAVs, paired with the challenges of operating during difficult meteorological conditions, can be prohibitive for their standardized use worldwide. A pilot study was conducted in a Northern Norwegian fjord during winter, to assess the feasibility of using a minimally modified and affordable consumer drone to collect blow samples even during the polar nights’ challenging weather conditions. For each flight, six petri dishes were attached with velcro to a DJI Mavic 2 Pro. The flights were conducted under temperatures ranging from -1 to -18 degrees Celsius, wind speeds ranging from 9 to 31 km/h, and with the absence of the sun. During the 6-day-long boat survey, 16 blow samples were successfully collected from 11 distinct groups of humpback whales (Megaptera novaeangliae). With this study, we further validated the use of a consumer drone as a practical, affordable, and simplified tool for blow collection, functional under harsh meteorological conditions.

Genetic, Endocrine, and Microbiological Assessments of Blue, Humpback and Killer Whale Health using Unoccupied Aerial Systems

ABSTRACTUnoccupied aerial system (UAS) technologies applied to health assessments of large whales can have positive implications for progressive management. We focused on the collection of cetacean respiratory blow samples for endocrine, DNA profiling, microbial metabarcoding, and metagenomics analyses, with the goal of improving management of large whale populations. Blow samples were collected from humpback (Megaptera novaeangliae, n = 109 samples analyzed), blue (Balaenoptera musculus, n = 21 samples analyzed), and killer whale (Orcinus orca, n = 1 sample analyzed) species, as well as the responses of the whales to the collection of their blow by UAS. Endocrine analyses were validated for 5 steroid hormones in humpback whales and 4 hormones in blue whales. For DNA profiling, we attempted to extract and amplify nuclear and mitochondrial DNA, resulting in sequencing of mtDNA haplotypes for 54% of samples, identification of sex for 39%, and individual identification by microsatellite genotyping for 17%. The DNA profiles of 2 of the blow samples from humpback whales were matched to a DNA register for this regional population. Metagenomic and microbial metabarcoding classifications found a diverse number of bacteria, eukaryotes, and viruses in humpback whale blow. Although a significant portion of classifications were found in both seawater and blow, several of the most abundant organisms were present only in blow samples, suggesting they are true members of the respiratory microbiome. A comprehensive integration of laboratory‐based approaches using noninvasive UAS collection technologies could become an important management tool for health assessments of large cetaceans, especially for species listed as endangered. The addition of individual and population‐level health assessments to currently practiced stewardship of large whales, renders them as excellent sentinels of ocean health. © 2021 The Wildlife Society.

Respiratory microbiota of humpback whales may be reduced in diversity and richness the longer they fast

Humpback whales endure several months of fasting while undertaking one of the longest annual migrations of any mammal, which depletes the whales’ energy stores and likely compromises their physiological state. Airway microbiota are linked to respiratory health in mammals. To illuminate the dynamics of airway microbiota in a physiologically challenged mammal, we investigated the bacterial communities in the blow of East Australian humpback whales at two stages of their migration: at the beginning (n = 20) and several months into their migration (n = 20), using barcoded tag sequencing of the bacterial 16S rRNA gene. We show that early in the fasting the whale blow samples had a higher diversity and richness combined with a larger number of core taxa and a different bacterial composition than later in the fasting. This study provides some evidence that the rich blow microbiota at the beginning of their fasting might reflect the whales’ uncompromised physiology and that changes in the microbiota occur during the whales’ migration.

Migrating eastern North Pacific gray whale call and blow rates estimated from acoustic recordings, infrared camera video, and visual sightings

During the eastern North Pacific gray whale 2014–2015 southbound migration, acoustic call recordings, infrared blow detections, and visual sightings were combined to estimate cue rates, needed to convert detections into abundance. The gray whale acoustic call rate ranged from 2.3–24 calls/whale/day during the peak of the southbound migration with an average of 7.5 calls/whale/day over both the southbound and northbound migrations. The average daily calling rate increased between 30 December–13 February. With a call rate model, we estimated that 4,340 gray whales migrated south before visual observations began on 30 December, which is 2,829 more gray whales than used in the visual estimate, and would add approximately 10% to the abundance estimate. We suggest that visual observers increase their survey effort to all of December to document gray whale presence. The infrared camera blow rate averaged 49 blows/whale/hour over 5–8 January. Probability of detection of a whale blow by the infrared camera was the same at night as during the day. However, probability of detection decreased beyond 2.1 km offshore, whereas visual sightings revealed consistent whale densities up to 3 km offshore. We suggest that future infrared camera surveys use multiple cameras optimised for different ranges offshore.

Virological Sampling of Inaccessible Wildlife with Drones.

There is growing interest in characterizing the viromes of diverse mammalian species, particularly in the context of disease emergence. However, little is known about virome diversity in aquatic mammals, in part due to difficulties in sampling. We characterized the virome of the exhaled breath (or blow) of the Eastern Australian humpback whale (Megaptera novaeangliae). To achieve an unbiased survey of virome diversity, a meta-transcriptomic analysis was performed on 19 pooled whale blow samples collected via a purpose-built Unmanned Aerial Vehicle (UAV, or drone) approximately 3 km off the coast of Sydney, Australia during the 2017 winter annual northward migration from Antarctica to northern Australia. To our knowledge, this is the first time that UAVs have been used to sample viruses. Despite the relatively small number of animals surveyed in this initial study, we identified six novel virus species from five viral families. This work demonstrates the potential of UAVs in studies of virus disease, diversity, and evolution.

An Economical Custom-Built Drone for Assessing Whale Health

Drones or unmanned Aerial Vehicles’ (UAVs) have huge potential to improve the safety and efficiency of sample collection from wild animals under logistically challenging circumstances. Here we present a method for surveying population health that uses UAVs to sample respiratory vapour, ‘whale blow’, exhaled by free-swimming humpback whales (Megaptera novaeangliae), and coupled this with amplification and sequencing of respiratory tract microbiota. We developed a low-cost multirotor UAV incorporating a sterile petri dish with a remotely operated ‘flip lid’ to sample whale blow with minimal disturbance to the whales. This design addressed several sampling challenges: accessibility; safety; cost, and critically, minimized the collection of atmospheric and seawater microbiota and other potential sources of sample contamination. We collected 59 samples of blow from northward migrating humpback whales off Sydney, Australia and used high throughput sequencing of bacterial ribosomal gene markers to identify putative respiratory tract microbiota. Model-based comparisons with seawater and drone-captured air demonstrated that our system minimized external sources of contamination and successfully captured sufficient material to identify whale blow-specific microbial taxa. Whale-specific taxa included species and genera previously associated with the respiratory tracts or oral cavities of mammals (e.g. Pseudomonas, Clostridia, Cardiobacterium), as well as species previously isolated from dolphin or killer whale blowholes (Corynebacteria, others). Many examples of exogenous marine species were identified, including Tenacibaculum and Psychrobacter spp. that have been associated with the skin microbiota of marine mammals and fish and may include pathogens. This information provides a baseline of respiratory tract microbiota profiles of contemporary whale health. Customized UAVs are a promising new tool for marine megafauna research and may have broad application in cost-effective monitoring and management of whale populations worldwide.

Thermal Imaging and Biometrical Thermography of Humpback Whales

Determining species distributions through time and space remains a primary challenge in cetacean science and conservation. For example, many whales migrate thousands of kilometers every year between remote seasonal habitats along migratory corridors that cross major shipping lanes and intensively harvested fisheries creating a dynamic spatial and temporal context that conservation decisions must take into account. Technological advances enabling automated whale detection have the potential to dramatically improve our knowledge of when and where whales are located, presenting opportunities to help minimize adverse human-whale interactions. Using thermographic data we show that near-horizontal (i.e. high zenith angle) infrared images of humpback whale (Megaptera novaeangliae) blows, dorsal fins, flukes and rostrums record similar magnitude brightness temperature anomalies relative to the adjacent ocean surface. Our results demonstrate that these anomalies are similar in both low latitude and high latitude environments despite a ~16°C difference in ocean surface temperature between study areas. We show that these similarities occur in both environments due to emissivity effects associated with oblique target imaging, rather than differences in cetacean thermoregulation. The consistent and reproducible brightness temperature anomalies we report provide important quantitative constraints that will help facilitate the development of transient temperature anomaly detection algorithms in diverse marine environments. Thermographic videography coupled with laser range finding further enables calculation of whale blow velocity, demonstrating that biometrical measurements are possible for near-horizontal datasets that otherwise suffer from emissivity effects. The thermographic research we present creates a platform for the delivery of 3 important contributions to cetacean conservation: 1) non-invasive species-level identifications based on whale blow shapes and velocities recorded by infrared videography; 2) reduced ship-strike rates through automated thermographic cetacean detection systems deployed in high traffic areas; 3) monitoring the spatial and temporal distributions of endangered animals in remote habitats.

Extensive Core Microbiome in Drone-Captured Whale Blow Supports a Framework for Health Monitoring.

The pulmonary system is a common site for bacterial infections in cetaceans, but very little is known about their respiratory microbiome. We used a small, unmanned hexacopter to collect exhaled breath condensate (blow) from two geographically distinct populations of apparently healthy humpback whales (Megaptera novaeangliae), sampled in the Massachusetts coastal waters off Cape Cod (n = 17) and coastal waters around Vancouver Island (n = 9). Bacterial and archaeal small-subunit rRNA genes were amplified and sequenced from blow samples, including many of sparse volume, as well as seawater and other controls, to characterize the associated microbial community. The blow microbiomes were distinct from the seawater microbiomes and included 25 phylogenetically diverse bacteria common to all sampled whales. This core assemblage comprised on average 36% of the microbiome, making it one of the more consistent animal microbiomes studied to date. The closest phylogenetic relatives of 20 of these core microbes were previously detected in marine mammals, suggesting that this core microbiome assemblage is specialized for marine mammals and may indicate a healthy, noninfected pulmonary system. Pathogen screening was conducted on the microbiomes at the genus level, which showed that all blow and few seawater microbiomes contained relatives of bacterial pathogens; no known cetacean respiratory pathogens were detected in the blow. Overall, the discovery of a shared large core microbiome in humpback whales is an important advancement for health and disease monitoring of this species and of other large whales. IMPORTANCE The conservation and management of large whales rely in part upon health monitoring of individuals and populations, and methods generally necessitate invasive sampling. Here, we used a small, unmanned hexacopter drone to noninvasively fly above humpback whales from two populations, capture their exhaled breath (blow), and examine the associated microbiome. In the first extensive examination of the large-whale blow microbiome, we present surprising results about the discovery of a large core microbiome that was shared across individual whales from geographically separated populations in two ocean basins. We suggest that this core microbiome, in addition to other microbiome characteristics, could be a useful feature for health monitoring of large whales worldwide.

Get the most out of blow hormones: validation of sampling materials, field storage and extraction techniques for whale respiratory vapour samples.

Studies are progressively showing that vital physiological data may be contained in the respiratory vapour (blow) of cetaceans. Nonetheless, fundamental methodological issues need to be addressed before hormone analysis of blow can become a reliable technique. In this study, we performed controlled experiments in a laboratory setting, using known doses of pure parent hormones, to validate several technical factors that may play a crucial role in hormone analyses. We evaluated the following factors: (i)practical field storage of samples on small boats during daylong trips; (ii)efficiency of hormone extraction methods; and (iii)assay interference of different sampler types (i.e. veil nylon, nitex nylon mesh and polystyrene dish). Sampling materials were dosed with mock blow samples of known mixed hormone concentrations (progesterone, 17β-estradiol, testosterone, cortisol, aldosterone and triiodothyronine), designed to mimic endocrine profiles characteristic of pregnant females, adult males, an adrenal glucocorticoid response or a zero-hormone control (distilled H2O). Results showed that storage of samples in a cooler on ice preserved hormone integrity for at least 6 h (P=0.18). All sampling materials and extraction methods yielded the correct relative patterns for all six hormones. However, veil and nitex mesh produced detectable assay interference (mean 0.22±0.04 and 0.18±0.03 ng/ml, respectively), possibly caused by some nylon-based component affecting antibody binding. Polystyrene dishes were the most efficacious sampler for accuracy and precision (P<0.001), but required an ethanol rinse for improved progesterone recovery (increased 81%; P<0.001). Awareness of assay interference from exogenous materials is crucial to future studies. This study establishes critical groundwork to help ensure that hormones can be measured accurately in samples obtained from field collections of whale blow.

Determination of steroid hormones in whale blow: It is possible

AbstractThe feasibility of using analysis of hormone content of whale blow samples to assess reproductive function is addressed. A suitable collection method and analytical technique using liquid chromatography‐mass spectrometry (LC‐MS) has been developed. Blow samples were collected opportunistically from free‐ranging humpback whales (Megaptera novaeangliae) (n= 35) and North Atlantic right whales (Eubalaena glacialis) (n= 18) using a 13‐m carbon fiber pole with a collection device. Samples were analyzed for the presence of testosterone and progesterone using a 55% isocratic gradient with LC‐MS. Testosterone was detected in four humpback whale samples and eight northern right whale samples. Progesterone was detected in seven humpback whale samples and eight northern right whale samples. This is the first documented use of lung mucosa to determine the presence of reproductive hormones in any free‐swimming cetacean and may provide a novel non‐invasive technique to quantify the hormonal condition of free‐swimming animals that spend brief periods of time at the water's surface.