AbstractThe Earth’s atmosphere is influenced by energetic electrons coming from the magnetosphere. This energetic electron precipitation (EEP) is energized by the solar wind and directly affects in the high‐latitude mesosphere and lower thermosphere (MLT). EEP forms odd nitrogen (NOx) and hydrogen oxides (HOx) which destroy ozone. During winter EEP‐NOx descends to the stratosphere, establishing the indirect EEP effect. Several studies have found that EEP is related to changes in temperature and winds in the northern winter stratosphere. One of the most prominent effects of EEP is the influence on the northern polar vortex, a westerly wind system surrounding the winter pole in the middle atmosphere. Most studies of the EEP effect on dynamical features of the middle atmosphere have relied on either model simulations or reanalysis datasets which are mainly limited to stratospheric heights. We study here EEP effects on chemical and dynamical properties of the stratosphere and mesosphere in the northern hemisphere by using EOS Aura satellite’s measurements of atmospheric properties and POES satellites' measurements of precipitating electrons. We confirm earlier results showing that EEP decreases ozone and affects the temperature in the polar middle atmosphere and strengthens the stratospheric polar vortex. We show that EEP weakens the mesospheric polar vortex in late winter. This effect on polar vortex is partly due to changes in propagation and convergence of planetary waves. Accordingly, the EEP effect on the northern polar vortex depends on planetary waves not only in the stratosphere, as found in earlier studies, but also in the mesosphere.