Weak Noncovalent Interactions Research Articles

Interfacial Hydrogen-Bond Interactions Driven Assembly toward Polychromatic Copper Nanoclusters.

Constructing versatile metal nanoclusters (NCs) assemblies through noncovalent weak interactions between inter-ligands is a long-standing challenge in interfacial chemistry, while compelling interfacial hydrogen-bond-driven metal NCs assemblies remain unexplored so far. Here, the study reports an amination-ligand o-phenylenediamine-coordinated copper NCs (CuNCs), demonstrating the impact of interfacial hydrogen-bonds (IHBs) motifs on the luminescent behaviors of metal NCs as the alteration of protic solvent. Experimental results supported by theoretical calculation unveil that the flexibility of interfacial ligand and the distance of cuprophilic CuI···CuI interaction between intra-/inter-NCs can be tailored by manipulating the cooperation between the diverse IHBs motifs reconstruction, therewith the IHBs-modulated fundamental structure-property relationships are established. Importantly, by utilizing the IHBs-mediated optical polychromatism of aminated CuNCs, portable visualization of humidity sensing test-strips with fast response is successfully manufactured. This work not only provides further insights into exploring the interfacial chemistry of NCs based on inter-ligands hydrogen-bond interactions, but also offers a new opportunity to expand the practical application for optical sensing of metal NCs.

Solid Additive Engineering for Next-generation Organic Photovoltaics.

Solution-processed bulk heterojunction (BHJ) organic solar cells (OSCs) have emerged as a promising next-generation photovoltaic technology. In this emerging field, there is a growing trend of employing solid additives (SAs) to fine-tune the BHJ morphology and unlock the full potential of OSCs. SA engineering offers several significant benefits for commercialization, including the ability to i) control film-forming kinetics to expedite high-throughput fabrication, ii) leverage weak noncovalent interactions between SA and BHJ materials to enhance the efficiency and stability of OSCs, and iii) simplify procedures to facilitate cost-effective production and scaling-up. These features make SA engineering a key catalyst for accelerating the development of OSCs. Recent breakthroughs have shown that SA engineering can achieve an efficiency of 19.67% in single-junction OSCs, demonstrating its effectiveness in promoting the commercialization of organic photovoltaic devices. This review provides a comprehensive overview of significant breakthroughs and pivotal contributions of emerging SAs, focusing on their roles in governing film-forming dynamics, stabilizing phase separation, and addressing other crucial aspects. The rationale and design rules for SAs in highly efficient and stable OSCs are also discussed. Finally, the remaining challenges are summarized, and perspectives on future advances in SA engineering are offered.

Room temperature shape self-adjustable tough hydrogel based on multi-physical crosslinking

Room temperature shape adjustable hydrogels (rtSAH) can be (re)processed into different stable shapes at ambient conditions, making them appealing for various applications. However, elastomer-like and mechanically tough rtSAH is hard to obtain because of the elastic recovery force that prevents a deformed new shape from being fixed. Herein, we demonstrate a supramolecular elastic rtSAH having high tensile strength (2.6 MPa) and large strain at break (1770 %), whose network structure is designed to rely on a combination of strong and weak non-covalent interactions through three types of physical crosslinking: host–guest interaction, hydrogen bonding and coordination interaction. When deformed at room temperature and held in that state for sufficient time, the hydrogel adapts to a stable new shape while remaining elastic. The reconstruction of the dynamic Fe3+-carboxylate coordination interaction in the deformed hydrogel is the key to self-locking the new shape with stored elastic energy and enabling the shape memory function. Exposure the rtSAH to UV light or an acid solution disrupts the coordination crosslinking and allows the hydrogel to recover its initial shape. The demonstrated structural design represents an effective strategy to develop all-physically crosslinked shape memory hydrogels whose shapes can be reprocessed and self-locked at room-temperature.

Ammonium-Binding Bifunctional Aza-Crown Ether Catalysts for Substrate-Selective Hydroxyl Functionalization.

Herein, we describe a new bifunctional macrocyclic catalyst that employs multiple weak noncovalent interactions to enable substrate-selective O-silylation of ammonium alcohols over more reactive aliphatic alcohols with up to >20:1 substrate selectivity. Our catalytic strategy merges (i) the use of crown ethers as ammonium-binding receptors and (ii) the exploitation of N-methyl imidazole as a catalytic motif. Our collective mechanistic studies reveal the importance of receptor size, conformational preorganization, and the number of hydrogen-bonding acceptor units needed to achieve high selectivity within the macrocyclic binding pocket.

Metal Complexes of Cobalt Chloride with Vinyl‐, Allyl‐ and Styrylbenzimidazole Ligands: Synthesis, Structure, and Properties

AbstractThree N‐substituted benzimidazole cobalt(II) complexes have been synthesized and fully characterized by elemental analysis, FT‐IR spectroscopy, and X‐ray crystallography. The crystal packing formation features were studied by AIM analysis, and the energy and nature of both weak noncovalent interactions in the crystal and metal–ligand coordination bonds were assessed. These N‐coordinated cobalt(II) complexes were screened for antimicrobial activities against Gram‐negative (Escherichia coli, Bacillus subtilis) and Gram‐positive (Enterococcus durans) bacteria. Minimal inhibitory concentrations (MIC = 6.2 mg/mL) were found for complex cobalt chloride with allylbenzimidazole ligands against E. durans and E. coli. Its antimicrobial activity is several times higher compared to the reference gentamicin. Molecular docking made it possible to consider the nature of binding of cobalt metal complexes with vinyl‐, allyl‐ and styrylbenzimidazole ligands to biological targets and estimate their energy. The binding energy meanings depend on protein and ligand type, and reaches 8 kcal/mol.

Tough Supramolecular Hydrogels Crafted via Lignin-Induced Self-Assembly.

Supramolecular hydrogels are typically assembled through weak non-covalent interactions, posing a significant challenge in achieving ultra strength. Developing a higher strength based on molecular/nanoscale engineering concepts is a potential improvement strategy. Herein, a super-tough supramolecular hydrogel is assembled by gradually diffusing lignosulfonate sodium (LS) into a polyvinyl alcohol (PVA) solution. Both simulations and analytical results indicate that the assembly and subsequent enhancement of the crosslinked network are primarily attributed to LS-induced formation and gradual densification of strong crystalline domains within the hydrogel. The optimized hydrogel exhibits impressive mechanical properties with tensile strength of ≈20MPa, Young's modulus of ≈14MPa, and toughness of ≈50MJm⁻3, making it the strongest lignin-PVA/polymer hydrogel known so far. Moreover, LS provides the supramolecular hydrogel with excellent low-temperature stability (<-60°C), antibacterial, and UV-blocking capability (≈100%). Interestingly, the diffusion ability of LS is demonstrated for self-restructuring damaged supramolecular hydrogel, achieving 3D patterning on hydrogel surfaces, and enhancing the local strength of the freeze-thaw PVA hydrogel. The goal is to foster a versatile hydrogel platform by combining eco-friendly LS with biocompatible PVA, paving the way for innovation and interdisciplinarity in biomedicine, engineering materials, and forestry science.

Unravelling the importance of hydrogen bonds and dihydrogen interactions in the supramolecular assembly of a caryolan-1-ol derivative: an experimental and theoretical investigation

We report here the synthesis of a caryolan-1-ol derivative, namely [(1R, 2S, 5R, 8S)-1-hydroxy-4,4,8-trimethyltricyclo[6.3.1.02,5]dodecan-6-one] (3), characterized by structural single-crystal X-ray diffraction, FTIR and 1H and 13C NMR spectroscopies. The crystal structure reveals weak noncovalent interactions along with O-H···O hydrogen bonding interactions that forms 1D network architectures. Hirshfeld surfaces and their two-dimensional fingerprint plots allow us to visualize the intermolecular contacts and their relative contributions to the total Hirshfeld surface for the compound. A comparative analysis against related compounds was carried out. The interaction energies for the molecular pair involving O-H···O hydrogen bonds indicated a dominant contribution to packing stabilization coming from the Coulombic components. Energy framework calculations afforded to analyse and visualize the topology of the intermolecular interactions responsible for the crystal packing, showing that dispersion energy prevail over the electrostatic one in the structure of 3. Theoretical calculations have been performed to analyse the unconventional noncovalent interactions observed in the solid-state structure of 3 using the quantum theory of atoms in molecules (QTAIM), noncovalent interactions plot (NCIplot) and natural bond orbital (NBO) computational tools.

Supramolecular assembly governed by tetrel, CN⋅⋅⋅π and other weak noncovalent interactions in two acrylonitrile derivatives with D-π-A topology: Crystallography, optical properties and theoretical studies

Two D-π-A acrylonitriles, (Z)-3-(4-methoxyphenyl)-2-(pyridin-4-yl)acrylonitrile (1) and (Z)-3-(4-piperidin-1-yl)-2-(pyridin-4-yl)acrylonitrile (2), were synthesized to investigate how the varying donor moieties affect their structural and optical properties. Compound 1 crystallized with two crystallographically independent molecules, each showing different orientations of the methoxy group, and exhibited herringbone molecular arrangement in the solid-state. This structure is stabilized by CH···N/π interactions, π-stacking, cyano···π stacking (CN···π) and a σ-hole tetrel bond involving the C and O atoms of the methoxy group. Compound 2 crystallized with a single molecule in the asymmetric unit and displayed columnar packing mode. This structure is stabilized intermolecular CH···N interactions, where all nitrogen atoms serve as acceptors, as well as by intermolecular CH···π interactions and π-stacking between adjacent pyridyl rings. Hirshfeld surfaces and 2D-fingerprint plots revealed the effect of donor moieties on the intermolecular interactions. The energetics of the molecular dimers observed in these structures were characterized by both CLP-PIXEL energy and DFT calculations. The nature of the tetrel bond was characterized using molecular electrostatic surface potential and deformation electron density maps. Theoretical charge density analysis was performed to characterize the noncovalent interactions in various molecular dimers of 1 and 2. The absorption spectra of compounds 1 and 2 exhibit a 40 nm red-shift in solution, attributed to the presence of the piperidyl moiety in compound 2.

Evaluation of charge-assisted hydrogen bonds and weak intermolecular interaction in trimethoprim 2-aminobenzoate: A combined crystallographic and theoretical approach

A comprehensive investigation of the weak non-covalent interactions within the crystal structure of trimethoprim 2-aminobenzoate (2,6-diamino-5-(3,4,5-trimethoxybenzyl)pyrimidin-1-ium 2-aminobenzoate) is presented. The protonation of trimethoprim and the deprotonation of 2-aminobenzoate were confirmed by NMR spectroscopy and a single-crystal X-ray diffraction study. Qualitative Hirshfeld surface analysis identified intermolecular H···H, O···H, and C···H contacts as the three primary interactions within the title salt. Fourteen molecular pairs (M1AA−M14AB) were extracted from the crystal packing of the title salt using the PIXEL method. These molecular dimers were further characterized using the QTAIM and DFT approaches. Seven intermolecular pairs (M1AA−M7BB) formed between like-charged species (i.e. +1···+1 or -1···-1) resulted in destabilization, with total energies (Etot) ranging from 67.2 to 200.1 kJ mol-1. Conversely, molecular pairs formed between oppositely charged species (i.e. +1···-1) exhibited stabilizing behavior, with interaction energies ranging from -133.7 to -449.7 kJ mol-1. Topological analysis of charge density revealed that two N–H···O hydrogen bonds between cation and anion displayed an intermediate character between shared and closed-shell interactions. Additionally, comparison with previously reported similar TMP salts (CSD ref. code: CESRUN, HURMOW and PARWUB) demonstrated 3D-isostructural packing features in the crystal structure of the title salt.

An Energetic and Topological Approach to Understanding the Interplay of Noncovalent Interactions in a Series of Crystalline Spiropyrrolizine Compounds.

Synthesis of quinoline-containing spiropyrrolizine was achieved via a 1,3-dipolar cycloaddition reaction of azomethine ylide (generated in situ from ninhydrin and l-proline) and (E)-2-styrylquinoline. The synthesized compounds were characterized by 1H NMR, 13C NMR, HRMS, and single-crystal XRD analysis. The XRD data revealed that the solid-state structures of the compounds belong to the monoclinic system of the space group P21/c and are stabilized through various weak noncovalent interactions such as C-H···O, C-H···π, and π···π interactions. The noncovalent interactions are characterized and quantified through Hirshfeld surface analysis. Moreover, the interaction energies of the intermolecular noncovalent interactions are calculated through PIXEL calculation. The PIXEL calculation provides precise interaction energy with an energy decomposition scheme. Energy Framework calculations have also been performed to delve deeper into understanding the intermolecular interactions. The intermolecular interactions are further characterized using Bader's theory of "atoms in molecules" (QTAIM) and the "noncovalent" (NCI) interaction plot index. The nature and strength of noncovalent interactions are analyzed from the topological parameters at (3, -1) bond critical points (BCPs).

Photophysical Response of Propranolol in Biomimetic Micellar Media of Alkyltrimethylammonium Bromide Surfactants: Effect of pH and Alkyl Chain Length.

The photophysical behavior of a β-blocker drug propranolol (PPL) in micellar environments, formed by alkyltrimethylammonium bromide surfactants viz.; Cetyltrimethylammonium bromide (CTAB), Tetradecyltrimethylammonium bromide (TTAB), and Dodecyltrimethylammonium bromide (DTAB), has been investigated through fluorescence and UV-visible spectroscopic techniques at pH levels of 3.5, 7.4, and 10.4. The impact of pH on the critical micelle concentration (cmc) and micropolarity of micelles were assessed using pyrene as a photophysical probe. The cmc values were found to be lower at pH 10.4 compared to pH 7.4 and pH 3.5. Fluorescence emission intensities of PPL at 323nm, 338nm, and 352nm were significantly influenced by pH, hydrophobic alkyl chain length of surfactants, and their concentrations. Quenching experiments with Cetylpyridinium chloride (CpCl) indicated the localization of charged and uncharged forms of PPL within micelles, with quenching constant (Ksv) values dependent on alkyl chain length and pH. At pH < pKa, PPL is positioned near the Stern layer, whereas at pH 10.4, its naphthalene moiety resides near the hydrophobic micellar core. UV spectroscopy showed that the charged form of PPL interacted with micelles only above cmc, while the neutral form interacted even below the cmc. Density Functional Theory (DFT) reveals the HOMO of the surfactants to be localized on the hydrocarbon chains, and the LUMO localized around the quaternary ammonium unit. Upon complexation with PPL, both HOMO and LUMO shifted to the drug, thereby decreasing energy levels. The findings are explained based on weak noncovalent interactions, further supported and analyzed through Reduced Density Gradient (RDG) and Noncovalent Interaction (NCI) methods, confirming synergistic non-covalent interactions in surfactant-PPL complexes.

Guanidinium and spermidinium decavanadates: as small biomimetic models to understand non-covalent interactions between decavanadate and arginine and lysine side chains in proteins

During the last three decades, numerous investigations have been conducted on polyoxidovanadates to treat several illnesses and inhibit enzymes. Numerous decavanadate compounds have been proposed as potential therapies for Diabetes mellitus, Cancer, and Alzheimer’s disease. Only six relevant functional proteins interacting with decavanadate, V10, have been deposited in the PDB. These are acid phosphatase, tyrosine kinase, two ecto-nucleoside triphosphate diphosphohydrolases (NTPDases), the human transient receptor potential cation channel (TRPM4), and the human cell cycle protein CksHs1. The interaction sites in these proteins mainly consist of Arginine and Lysine, side chains binding to the decavanadate anion. To get further knowledge regarding non-covalent interactions of decavanadate in protein environments, guanidinium and spermidinium decavanadates were synthesized, crystallized, and subjected to analysis utilizing various techniques, including FTIR, Raman, 51V-NMR, TGA, and X-ray diffraction. The DFT calculations were employed to calculate the interaction energy between the decavanadate anion and the organic counterions. Furthermore, the Quantum Theory of Atoms in Molecules (QTAIM) and Non-covalent Interaction-Reduced Density Gradient (NCI-RDG) analyses were conducted to understand the non-covalent interactions present in these adducts. Decavanadate can engage in electrostatic forces, van der Waals, and hydrogen bond interactions with guanidinium and spermidinium, as shown by their respective interaction energies. Both compounds were highly stabilized by strong hydrogen bond interactions N−H···O and weak non-covalent interactions C−H···O. In addition, the interactions between guanidinium and spermidinium cations and decavanadate anion form several stable rings. This study provides new information on non-covalent intermolecular interactions between decavanadate and small biomimetic models of arginine and lysine lateral chains in protein environments.

Nucleosides as Organizing Architectural Moieties

Chemistry “beyond the molecule” is epitomized in nature by a plethora of relatively weak noncovalent interactions. The three-dimensional structures of most biopolymers are controlled with noncovalent interactions, either between different parts of the same strand (as in protein α-helices) or between two separate strands (as in the DNA duplex and protein β-sheet). While nature has refined the construction of biopolymers, our mastery of the subtle noncovalent interactions as synthetic tools is in an early stage of development. Only in the past two decades people begun to develop ways of mimicking the natural light-harvesting complexes by noncovalent assembly of porphyrin units aiming to obtain favored spacing and orientation between the chromophores. The construction of multi-chromophoric assemblies has led to resurgence of interest in coordination chemistry due to formation of ordered arrays directed through molecular recognition events. As a module in the construction of supramolecular assemblies, porphyrins and metallo-porphyrins can be exploited in two different ways: porphyrins can behave as donor building blocks insofar as they comprise meso-substituents, such as pyridyl groups, which can act as ligands that can suitably coordinate to metal cations, while metalloporphyrins can act as acceptor building blocks as soon as the metal atom inside the porphyrin core has at least one axial site available for coordination. For the last years, we have focussed on cofacial bis-porphyrin tweezers for host/guest interactions and investigated the possibilty to obtain self-coordinated molecular systems with predictable spectral and redox characteristics. We report here the synthesis of a di-nucleotide bearing pendant porphyrins dedicated to adopt a pre-organized coformation with face-to-face porphyrins, and capable to self-organize in a stable sandwich type complexe with bidentate base such as DABCO.1 Using a similar strategy as the one used in antisense research, an artificial nucleotidic backbone was built from modified deoxy-uridine units linked with a more rigid linker than the phosphodiester moieties found in natural oligonucleotides. Antisense research uses modified oligonucleotides, less flexible than natural strands, to pre-organize the system toward the obtaining of stable double helices between synthesized and natural oligonucleotides. A modified oligonucleotidic backbone was here used to target a parallel conformation of the porphyrins appended to each deoxy-uridine moiety. To provide a rigid environment for the porphyrins, the uridine units were coupled in 3’-5’ stepwise fashion using ether-ester type of spacer of suitable length, and porphyrins were anchored to the uridine by means of robust carbon-carbon bonds.Earlier studies demonstrated that a peptidic linker doesn’t provide sufficient pre-organization to enhance significantly the association constant with bidentate bases such as DABCO on the contrary of some flexible linkers such as uridine or 2’-deoxyuridine. We document herein that the gain in stability for the formation of sandwich type host-guest complex with DABCO can be even greater when a dinucleotide linker is used. Such pre-organization increases the association constants by one to two orders of magnitude when compared to the association constants of the same bidentate ligands with a reference Zn(II) porphyrin. Comparison of these results with those obtained for rigid tweezers shows a better efficiency of the flexible nucleosidic dimers.We thus document the fact that the choice of rigid spacers is not the only way to pre-organize bis-porphyrins, and that some well-chosen nucleosidic linkers offer an interesting option for the synthesis of such devices. Furthermore, the chirality and enantio-purity of the nucleosidic linkers paves the way toward the selective complexation of enantio-pure bidentate guests and the resolution of racemates. Acknowledgements This work was supported by the CNRS and the French Ministry of Research. References Solladié, R. Rein, S. Bouatra, S. Merkas, C. Sooambar, I. Piantanida, M. Žinić, J. Porphyrins Phthalocyanines 2020, 24, 636-645.

Ionic 2D Materials

2D materials are an exciting topic with a wide variety of applications in many research fields, from optoelectronics, photonics or qubit devices to catalysis. So far, these layered nanoscopic materials have been obtained by different procedures. In top-down approaches, from simple mechanical "Scotch tape" exfoliation to liquid exfoliation to break the weak non-covalent interactions between layers. In this project, the challenge was to obtain 2D flakes of a 3D ionic starting material with cubic rock salt structure (e.g. alkali halides NaCl, NaF, KCl, KF or CsF). They will have physical properties with substantial differences from those of known 2D materials. For example, there are few large bandgap 2D materials, almost exclusively BN layers. The BN bulk system has a band gap around 4 eV and its monolayer 6 eV, while the employed alkali halides in this project, the bulk vales are 10.0 eV (CsF), 10.9 eV (KF), 11.7 eV (NaF), KCl eV (8.5) and eV NaCl (8.6). This will open many applications that are now only restricted to BN layers. The crucial point is how it is possible to exfoliate an isotropic 3D material with ionic interactions in three spatial directions.(1,2) The intercalation of bromine molecules in CsF was corroborated, many years ago, by X-ray single-crystal diffraction.(1,3, see Figure) The intercalated structure is analogous to that of other conventional 2D materials; for example, graphene also with bromine molecules. This intercalation into the 3D structure of the alkali halide has two effects, one is to generate an anisotropic 2D structure with alternated monoatomic CsF layers and layers of Br2 molecules. The second important effect is that now for the exfoliation of the CsF-Br2 compound, only the non-ionic F···Br-Br interactions must be broken. Preliminary DFT calculations indicate that such contact energies are of the same order of magnitude as other non-covalent interactions of common 2D materials.The intercalation of such 2D materials has been performed by the intercalation of Br2 and IBr molecules combined with different exfoliation techniques (sonication-centrifugation, ball milling, microwaves..). The characterization of the 2D flakes has been performed using Atomic Force Microscopy. The final goal of this project is to make a profit from the large gap of such 2D systems for optoelectronic properties, such as single-photon emission.(1) Desmarteau, D. D.; Grelbig, T.; Hwang, S. H.; Seppelt, K., Angewandte Chemie-International Edition in English 1990, 29 (12), 1448-1449(2) Ruiz, E.; Alvarez, S., Journal of the American Chemical Society 1995, 117 (10), 2877-2883.(3) Drews, T.; Marx, R.; Seppelt, K., Chemistry-a European Journal 1996, 2 (10), 1303-1307. Figure 1

Crystalline Porous Organic Cage Membranes Constructed Using Fortified Intermolecular Interactions for Molecular Sieving.

Among the various types of materials with intrinsic porosity, porous organic cages (POCs) are distinctive as discrete molecules that possess intrinsic cavities and extrinsic channels capable of facilitating molecular sieving. However, the fabrication of POC membranes remains highly challenging due to the weak noncovalent intermolecular interactions and most reported POCs are powders. In this study, we constructed crystalline free-standing porous organic cage membranes by fortifying intermolecular interactions through the induction of intramolecular hydrogen bonds, which was confirmed by single-crystal X-ray analysis. To elucidate the driving forces behind, a series of terephthaldehyde building blocks containing different substitutions were reacted with flexible triamine under different conditions via interfacial polymerization (IP). Furthermore, density functional theory (DFT) calculations suggest that intramolecular hydrogen bonding can significantly boost the intermolecular interactions. The resulting membranes exhibited fast solvent permeance and high rejection of dyes not only in water, but also in organic solvents. In addition, the membrane demonstrated excellent performance in precise molecular sieving in organic solvents. This work opens an avenue to designing and fabricating free-standing membranes composed of porous organic materials for efficient molecular sieving.

Crystalline Porous Organic Cage Membranes Constructed Using Fortified Intermolecular Interactions for Molecular Sieving

AbstractAmong the various types of materials with intrinsic porosity, porous organic cages (POCs) are distinctive as discrete molecules that possess intrinsic cavities and extrinsic channels capable of facilitating molecular sieving. However, the fabrication of POC membranes remains highly challenging due to the weak noncovalent intermolecular interactions and most reported POCs are powders. In this study, we constructed crystalline free‐standing porous organic cage membranes by fortifying intermolecular interactions through the induction of intramolecular hydrogen bonds, which was confirmed by single‐crystal X‐ray analysis. To elucidate the driving forces behind, a series of terephthaldehyde building blocks containing different substitutions were reacted with flexible triamine under different conditions via interfacial polymerization (IP). Furthermore, density functional theory (DFT) calculations suggest that intramolecular hydrogen bonding can significantly boost the intermolecular interactions. The resulting membranes exhibited fast solvent permeance and high rejection of dyes not only in water, but also in organic solvents. In addition, the membrane demonstrated excellent performance in precise molecular sieving in organic solvents. This work opens an avenue to designing and fabricating free‐standing membranes composed of porous organic materials for efficient molecular sieving.

Elucidation of the solution structure of macrocyclic paritaprevir and exploration of its antitumor potential through molecular docking

Macrocyclic molecules have emerged as significant contenders in drug development and supramolecular chemistry. Paritaprevir is a 15-membered macrocycle approved for the treatment of chronic Hepatitis C virus infection. The structural flexibility inherent in paritaprevir enables the presentation of diverse conformational features in solutions, thereby influencing its binding pattern with proteins. In this paper, we investigated the structural characteristics of paritaprevir in protic solvents (methanol and trifluoroethanol) as well as an aprotic solvent (acetonitrile) by using experimental electronic circular dichroism spectra combined with density functional theory calculations. Our study reveals that paritaprevir can adopt different molecular conformations due to its flexible carbon chain and the solvent environment. Conformer B is particularly stable in polar solvents because of the planar hydrophobic interactions between the phenanthridine and methylpyrazine groups. Density functional theory calculations-assisted structural analyses further disclosed the weak noncovalent interactions within the stable conformations of paritaprevir. Molecular docking of paritaprevir on different cancer proteins showed that the macrocycle was highly selective against lymphoma, endometrial carcinoma, colorectal cancer, and breast cancer. This suggests that paritaprevir could potentially serve as a promising lead compound for drug design targeting these specific types of cancers. The comparison between the low energy conformation and pharmacophore conformation (docking conformation) indicates that conformer B is the primary pharmacophore conformation of paritaprevir, providing important macrocyclic structural characteristics for future macrocyclic drug development.

Selection of organic solvents as reaction media for laccase from Trametes versicolor

The ability of laccases to work effectively in properly selected aqueous-organic solutions significantly expands the scope of their application, making them commercially attractive and more competitive. However, it must be considered that molecules of organic solvent are very aggressive towards enzymes and destroy weak non-covalent interactions that maintain the spatial structure of the protein. In this work, we quantitatively described the influence of the nature of water-miscible organic solvents and their concentration on the activity and stability of Trametes versicolor laccase during the oxidation of ABTS (2,2-azino-bis (3-ethylbenzothiazoline-6-sulfonic acid)) through the maximum rates and the Michaelis constants KM. The obtained kinetic parameters make it possible to compare the effect of various organic solvents on laccase and select the most optimal one, which minimizes the decrease in enzyme activity, maintains its stability and allows repeated use. Among the solvents studied, polyhydroxy compounds have the least negative effect on laccase activity; however, in all cases, a high concentration of organic solvent (≥30% (v/v)) leads to suppression of enzymatic activity. It has been shown that the longer the alkyl chain (hydrophobic fragment of the structure), the stronger the negative effect of alcohols on enzymes. The most toxic solvent for Trametes versicolor laccase is isopropanol. In addition, numerous examples of various uses of Trametes versicolor in aquatic-organic environments are discussed here.

Insight into the Metal-Involving Chalcogen Bond in the PdII/PtII-Based Complexes: Comparison with the Conventional Chalcogen Bond.

The metal-involving Ch···M chalcogen bond and the conventional Ch···O chalcogen bond between ChX2 (Ch = Se, Te; X = CCH, CN) acting as a Lewis acid and M(acac)2 (M = Pd, Pt; Hacac = acetylacetone) acting as a Lewis base were studied by density functional theory calculations. It has been observed that the nucleophilicity of the PtII complexes is higher than that of the corresponding PdII complexes. As a result, the PtII complexes tend to exhibit a more negative interaction energy and larger orbital interaction. The strength of the chalcogen bond increases with the increase of the chalcogen atom and the electronegativity of the substituent on the Lewis acid and vice versa. The metal-involving chalcogen bond shows a typical weak closed-shell noncovalent interaction in the (HCC)2Ch···M(acac)2 complexes, while it exhibits a partially covalent nature in the (NC)2Ch···M(acac)2 complexes. The conventional Ch···O chalcogen bond displays the character of a weak noncovalent interaction, and its strength is generally weaker than that of metal-involving Ch···M interactions. It could be argued that the metal-involving chalcogen bond is primarily determined by the correlation term, whereas the conventional chalcogen bond is mainly governed by the electrostatic interaction.

Mechanochromism of π-conjugated borate derivatives and the effect of intermolecular non-covalent forces on molecular packing and mechanochromic property

We prepared three π-conjugated pinacol borate derivatives anthryl dioxaborolane (ANB), pyrenyl dioxaborolane (PYB) and perylenyl dioxaborolane (PEB) based on anthracene, pyrene and perylene moieties, and studied their optical properties in solid and solution. Interestingly, the three molecules were structurally similar, yet exhibited different optical properties and mechanochromic behavior. Crystal structure studies showed that the mechanical fluorescent response of ANB, PYB and PEB were closely related to the molecular packing modes. Although there were multiple π-π and σ-π interactions in all three molecules, the conjugation degree of ANB was relatively low, resulting in a weak π-π interaction. Therefore, the effective partial parallel packing between adjacent ANB could not form in the initial state, and external mechanical stimulation could not induce the change of optical properties. In PYB and PEB molecules with a high conjugation degree, the π-π interaction was stronger. A partial parallel packing state was formed between the molecules under the synergistic action of π-π and σ-π interaction. Under external disturbance, the relative slippage between molecules was easy to occur. Thus, the characteristic static excimer fluorescence was displayed due to the enhancement of parallel packing. Since the intermolecular interactions of PYB and PEB were a kind of weak non-covalent forces, the packing state changed by external force could return to the initial state at room temperature, showing reversible mechanochromic characteristic. This kind of room temperature reversible force sensitive material constructed by weak non-covalent interactions was expected to be applied and popularized in the fields of encrypted communication and anti-counterfeiting display.