Accurate determination of water saturation is a critical aspect of reservoir characterization and development potential of a hydrocarbon field. The inherent heterogeneity in carbonate reservoirs significantly influences the Archie equation coefficients and, consequently, water saturation calculations. In this study, 160 direct core sample water saturation measurements using the Dean-Stark method have been used. The primary goal was to identify the most suitable reservoir heterogeneity management approach for water saturation calculation. The research focuses on the Dalan and Kangan formations (equivalent to Khuff Formation), known as some of the most hydrocarbon-rich (gas) reservoirs globally, located in the western part of the Persian Gulf. To manage reservoir heterogeneity, we employed various techniques, including Winland R35, flow zone indicator, Lucia, pore types, and electrofacies, utilizing porosity and permeability core data, thin section studies, and well-logging data to classify the studied intervals into more homogeneous categories. Subsequently, we measured Archie parameters and, for the first time, water saturations derived from Dean-Stark measurements were compared with Archie saturations from various heterogeneity management methods. Additionally, the influence of geological and petrophysical parameters on the accuracy of water saturation calculations in different rock types is discussed. Our results highlighted the significance of geometrical attributes of pore types, pore throat radius, and permeability as key factors affecting the precision of water saturation calculations. Moreover, our investigation revealed that Lucia's rock typing methodology exerted a substantial influence on the control of permeability and the distribution of water saturation within the reservoir. Our analysis revealed that the electrofacies method provided the most precise estimates for water saturation, with a mean difference of 0.07 (v/v) units compared to the Dean-Stark method. Subsequently, the accuracy of predicted water saturation in rock types determined by the Lucia method, with a mean error of 0.09 (v/v), ranked second among the rock typing methods. Winland R35 and flow zone indicator methods exhibited the highest uncertainty in water saturation estimation, with mean differences of 0.23 and 0.21 (v/v), respectively, compared to the Dean-Stark method.