The rice–fish co-culture pattern, a sustainable agricultural production method, plays a significant role in enhancing farmland ecological and economic benefits. However, few studies have evaluated the water quality of this system using the water quality index (WQI). In this study, improvements were made to the United States National Sanitation Foundation WQI (NSFWQI), including indicator selection, weight calculation, and sub-indexing, using principal component analysis (PCA), a minimum data set (MDS), linear function equations, and a comprehensive water quality assessment of the double-cropping rice–fish (DRF) co-culture and (DR) rice patterns. The results showed that using PCA; pH, dissolved oxygen (DO), ammonium nitrogen (NH4+-N), nitrate nitrogen (NO3−-N), and the Shannon–Wiener index were selected from 11 water quality indicators to construct the MDS for WQI calculation. Based on the WQI results, the DRF had a negative impact on water quality, with the Shannon–Wiener index the greatest contributor to the WQI (22.9 %), consistently ranging between 1 and 3. Although total phosphorus (TP) and chemical oxygen demand (COD) were not included in the MDS for the WQI calculation, their significant increase during the late rice season in the DRF indicated water quality deterioration, further validating the accuracy of the improved NSFWQI. The improved NSFWQI model provides a more objective analysis of water quality under the rice–fish co-culture pattern. Compared with existing water quality evaluation methods, this approach offers advantages such as comprehensiveness, low cost, and standardization, and presents an effective alternative for water quality assessment.
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