It is commonly known that mechanical stimulation, for example, wall shear stress (WSS), can affect cellular behaviours. In vitro experiments have been performed by applying fluid-induced WSS to investigate the cell physiology and pathology. Porous scaffolds are used in these experiments for housing and facilitating the micro-physical/chemical environment on cells during 3-dimensional (3D) cell culturing. It is known that scaffold porous geometries influence scaffold permeability and internal WSS. Computational simulations are commonly employed to determine the WSS; however, these simulations can be computationally expensive and may not be readily accessible to everyone due to a knowledge gap. To address this limitation, this study proposes an empirical equation for calculating the scaffold permeability based on the Kozeny-Carman equation. The new equation considers the porous geometric features, providing an accurate estimation of the scaffold permeability. Furthermore, the study introduces a new correlation between WSS and permeability, aiming to establish an efficient and precise estimation of internal WSS. This correlation enables efficient estimation of the WSS within porous scaffolds without relying on computationally demanding simulations. Therefore, the output from this study can negate the issues of using computational simulation for determining scaffold permeability and internal WSS under perfusion flow by providing empirical equations.