Sugar-beet Virus Research Articles

Meta-transcriptomic analysis reveals the geographical expansion of known sugarbeet-infecting viruses and the occurrence of a novel virus in sugarbeet in the United States.

In this study, meta-transcriptome sequencing was conducted on a total of 18 sugarbeet (Beta vulgaris L. subsp. vulgaris) sample libraries to profile the virome of field-grown sugarbeet to identify the occurrence and distribution of known and potentially new viruses from five different states in the United States. Sugarbeet roots with symptoms resembling rhizomania caused by beet necrotic yellow vein virus (BNYVV), or leaves exhibiting leaf-curling, yellowing to browning, or green mosaic were collected from the sugarbeet growing areas of California, Colorado, Idaho, Minnesota, and North Dakota. In silico analysis of de novo assembled contigs revealed the presence of nearly full-length genomes of BNYVV, beet soil-borne virus (BSBV), and beet soil-borne mosaic virus (BSBMV), which represent known sugarbeet-infecting viruses. Among those, BNYVV was widespread across the locations, whereas BSBV was prevalent in Minnesota and Idaho, and BSBMV was only detected in Minnesota. In addition, two recently reported Beta vulgaris satellite virus isoforms (BvSatV-1A and BvSatV-1B) were detected in new locations, indicating the geographical expansion of this known virus. Besides these known sugarbeet-infecting viruses, the bioinformatic analysis identified the widespread occurrence of a new uncharacterized Erysiphe necator-associated abispo virus (En_abispoV), a fungus-related virus that was identified in all 14 libraries. En_abispoV contains two RNA components, and nearly complete sequences of both RNA1 and RNA2 were obtained from RNASeq and were further confirmed by primer-walking RT-PCR and Sanger sequencing. Phylogenetic comparison of En_abispoV isolates obtained in this study showed varying levels of genetic diversity within RNA1 and RNA2 compared to previously reported isolates. The undertaken meta-transcriptomic approach revealed the widespread nature of coexisting viruses associated with field-grown sugarbeet exhibiting virus disease-like symptoms in the United States.

First Report of Beet Yellows Virus Causing Virus Yellows in Sugar Beet in Serbia.

Several viruses have been described to infect sugar beet (Beta vulgaris var. saccharifera L.), but virus yellows disease is one of the most important diseases in many sugar beet growing areas. It is caused by four viruses either in single or mixed infection, including the poleroviruses beet western yellows virus (BWYV), beet mild yellowing virus (BMYV), and beet chlorosis virus (BChV), and a closterovirus beet yellows virus (BYV) (Stevens et al. 2005; Hossain et al. 2021). In August 2019, five samples of sugar beet plants showing yellowing on interveinal leaf tissue were collected in a sugar beet crop in the Novi Sad locality (Vojvodina Province, Serbia). Double-antibody sandwich (DAS)-ELISA commercial antisera (DSMZ, Braunschweig, Germany) were used to test the collected samples for the presence of the most common sugar beet viruses: beet necrotic yellow vein virus (BNYVV), BWYV, BMYV, BChV, and BYV. Commercial positive and negative controls were included in each ELISA test. BYV was serologically detected in all sugar beet samples, but no other viruses tested were found. The presence of BYV in sugar beet plants was further confirmed by conventional reverse transcription (RT)-PCR. Total RNAs were extracted using the RNeasy Plant Mini Kit (Qiagen, Hilden, Germany), according to the manufacturer's instructions, and used as template in the RT-PCR. Total RNAs extracted from healthy sugar beet leaves and molecular-grade water were included as negative controls in the RT-PCR analysis. RT-PCR confirmed the presence of BYV in all naturally infected plants using four sets of specific primers (Kundu and Ryšánek 2004), whereas no amplification products were obtained in the negative controls. The RT-PCR products derived from isolate 209-19 were purified and directly sequenced in both directions using the same primer pairs as in RT-PCR (accession numbers OQ686792 to OQ686794). Multiple sequence alignment of the L-Pro and N-terminal part of the MET genes showed that the Serbian BYV isolate had the highest nucleotide identity (99.01% and 100%, respectively) with several BYV isolates in GenBank originating from different parts of the world. Sequence analysis of the HSP70 gene showed the highest similarity (99.79%) with the BYV-Cro-L isolate found in Croatia. In a semi-persistent type of transmission test, aphids (Myzus persicae Sulzer) were allowed to feed on BYV-infected leaves of an ELISA-positive sample (209-19) for 48 hours, and then the aphids were transferred to five plants each of Spinacia oleracea cv. Matador and B. vulgaris ssp. vulgaris cv. Eduarda for a three-day inoculation access period. All test plants were successfully infected and exhibited symptoms in the form of interveinal yellowing up to three weeks postinoculation. RT-PCR confirmed the presence of BYV in all inoculated plants. A study by Nikolić (1951) suggested a possible presence of BYV based on symptoms observed on sugar beet plants in fields, but to our knowledge this is the first report of BYV in sugar beet in Serbia. As sugar beet is one of the most important industrial crops in Serbia, the presence of BYV could lead to significant losses, considering that aphid vectors are widespread under Serbian environmental conditions. The discovery of BYV on sugar beet should prompt a more detailed survey and subsequent testing of susceptible hosts to determine the distribution and incidence of BYV in Serbia.

Rhizomania: Hide and Seek of Polymyxa betae and the Beet Necrotic Yellow Vein Virus with Beta vulgaris.

The molecular interactions between Polymyxa betae, the protist vector of sugar beet viruses, beet necrotic yellow vein virus (BNYVV), the causal agent of rhizomania, and Beta vulgaris have not been extensively studied. Here, the transmission of BNYVV to sugar beet by P. betae zoospores was optimized using genetically characterized organisms. Molecular interactions of aviruliferous and viruliferous protist infection on sugar beet were highlighted by transcriptomic analysis. P.betae alone induced limited gene expression changes in sugar beet, as a biotrophic asymptomatic parasite. Most differentially expressed plant genes were down-regulated and included resistance gene analogs and cell wall peroxidases. Several enzymes involved in stress regulation, such as the glutathione-S-transferases, were significantly induced. With BNYVV, the first stages of the P. betae life cycle on sugar beet were accelerated with a faster increase of relative protist DNA level and an earlier appearance of sporangia and sporosori in plants roots. A clear activation of plant defenses and the modulation of genes involved in plant cell wall metabolism were observed. The P. betae transcriptome in the presence of BNYVV revealed induction of genes possibly involved in the switch to the survival stage. The interactions were different depending on the presence or absence of the virus. P. betae alone alleviates plant defense response, playing hide-and-seek with sugar beet and allowing for their mutual development. Conversely, BNYVV manipulates plant defense and promotes the rapid invasion of plant roots by P. betae. This accelerated colonization is accompanied by the development of thick-walled resting spores, supporting the virus survival. [Formula: see text] Copyright © 2022 The Author(s). This is an open access article distributed under the CC BY-NC-ND 4.0 International license.

Molecular mechanisms involved in the pathogenesis of beet soil-borne viruses.

The genus Benyvirus includes the most important and widespread sugar beet viruses transmitted through the soil by the plasmodiophorid Polymyxa betae. In particular Beet necrotic yellow vein virus (BNYVV), the leading infectious agent that affects sugar beet, causes an abnormal rootlet proliferation known as rhizomania. Beet soil-borne mosaic virus (BSBMV) is widely distributed in the United States and, up to date has not been reported in others countries. My PhD project aims to investigate molecular interactions between BNYVV and BSBMV and the mechanisms involved in the pathogenesis of these viruses.BNYVV full-length infectious cDNA clones were available as well as full-length cDNA clones of BSBMV RNA-1, -2, -3 and -4. Handling of these cDNA clones in order to produce in vitro infectious transcripts need sensitive and expensive steps, so Ideveloped agroclones of BNYVV and BSBMV RNAs, as well as viral replicons allowing the expression of different proteins.Chenopodium quinoa and Nicotiana benthamiana plants have been infected with in vitro transcripts and agroclones to investigate the interaction between BNYVV and BSBMV RNA-1 and -2 and the behavior of artificial viral chimeras. Simultaneously I characterized BSBMV p14 and demonstrated that it is a suppressor of posttranscriptional gene silencing sharing common features with BNYVV p14.

Beet necrotic yellow vein virus genome reassortments in a resistant sugar beet variety showing–in a small area in France–strong rhizomania symptoms

The genome composition of Beet necrotic yellow vein virus (BNYVV) was analysed in rootlets of field-grown sugar beets belonging to a variety which in spite of carrying the Rz1 resistance gene had developed strong rhizomania symptoms in a small area of France. This area was located in a borderline region between the distribution areas of P type BNYVV on one side and of A and B type BNYVV on the other. All five samples contained P type RNA 5. RNAs 1 to 4 were derived either solely from the A, B or P types or from mixtures of B and P types. It remains to be shown whether or not these RNA reassortments are responsible for the observed resistance breaking. By means of immunosorbent electron microscopy other sugarbeet viruses, i.e. Beet soil-borne virus, Beet virus Q, Beet mosaic virus, Turnip mosaic virus or Beet black scorch virus were not detected in these samples.

Antagonistic effects of natural Pseudomonas putida biotypes on Polymyxa betae Keskin, the vector of Beet necrotic yellow vein virus in sugar beet

This in vivo study investigated the ability of fluorescent Pseudomonas spp. to suppress Polymyxa betae, a vector of Beet necrotic yellow vein virus causing rhizomania in sugar beet fields. For this purpose, the Pseudomonas putida biotype A (PpA) and biotype B (PpB) were isolated from sugar beet growing areas in Samsun, Turkey and with indicated suppression of P. betae were used against P. betae as a biocontrol agent. Firstly, PpA and PpB were applied to the roots of sugar beet seedlings of rhizomania-susceptible (cv. Arosa) and partially resistant (cv. Leila) cultivars. Statistical differences were not significant among PpA, PpB, Leila and Arosa culti-vars within rhizomania infested soil treatments, and there were also no significant differences among PpB and control groups (P> 0.05). In contrast, the partially resistant cultivar Leila with rhizomania free soil, PpB and negative control were significantly different from the other treatments (P> 0.05). Furthermore, numbers and diameters of the resting spores were significantly reduced by PpA and PpB treatments. In the treatments with PpA and PpB, a positive effect was observed on sugar beet weight and growth.

Suppression of Resistance-Breaking Beet necrotic yellow vein virus Isolates by Beet oak-leaf virus in Sugar Beet.

Rhizomania, a serious disease of sugar beet (Beta vulgaris), is caused by Beet necrotic yellow vein virus (BNYVV). Resistance allele Rz1 has been widely incorporated into commercial cultivars. Recently, resistance-breaking isolates of BNYVV (RB-BNYVV) were identified and characterized. When the occurrence of RB-BNYVV was surveyed throughout the sugar-beet-growing areas in the United States, most soil samples contained Beet oak-leaf virus (BOLV) as well. BNYVV and BOLV often occurred in the same field and sometimes in the same sugar beet plant. The possibility of interactions between these two Polymyxa betae-transmitted sugar beet viruses was tested. Plants grown in soils infested with aviruliferous P. betae or carrying RB-BNYVV and BOLV, alone and in combination, were compared with plants grown in noninfested soil for differences in plant fresh weight and virus content as measured by enzyme-linked immunosorbent assay (ELISA). Rz1 and Rz2 resistance genes that condition resistance to BNYVV did not confer resistance to BOLV. BNYVV ELISA values were significantly higher in single infections than in mixed infections with BOLV in both the rhizomania-resistant and -susceptible cultivars. In contrast, ELISA values of BOLV were not significantly different between single and mixed infections in both the rhizomania-resistant and -susceptible cultivars. Results indicate that BOLV may suppress BNYVV in mixed infections. Soils infested with P. betae significantly reduced fresh weight of sugar beet seedlings regardless of whether they were with or without one or both viruses or resistance genes.

Eradication of Polymyxa betae by Thermal and Anaerobic Conditions and in the Presence of Compost Leachate

AbstractThe abiotic conditions required for eradication of Polymyxa betae, the vector of Beet necrotic yellow vein virus in sugar beet, were investigated. Survival of resting spores of P. betae was determined under aerobic (30 min, 4 days and 21 days) and anaerobic (4 days) conditions under several temperature regimes in a water suspension and in leachate extracted from an aerobic compost heap. In water under aerobic conditions the lethal temperature was 60, 55 and 40°C for exposure times of 30 min, 4 days and 21 days, respectively. The effect of compost leachate and/or anaerobic conditions on survival of P. betae depended on temperature. After incubation for 4 days at 20°C, no significant effects of anaerobic conditions or leachate on the survival of P. betae were found. However, at 40°C for 4 days under anaerobic conditions, survival of P. betae was significantly lower than survival under aerobic conditions in water as well as in leachate. In leachate taken from an aerobic compost heap, aerobically incubated at 40°C for 4 days, survival of P. betae was significantly lower than survival in water at the same temperature. As anaerobic spots are prevalent in aerobic compost heaps, especially during the thermophilic phase, actual inactivation temperatures under composting conditions are likely to be lower than the temperatures we found for eradication in water under aerobic conditions.

Beet necrotic yellow vein virus (benyvirus)

<i>Beet necrotic yellow vein virus</i> (<i>benyvirus</i>)

Study of sugar beet viruses transmitted by Polymyxa betae in the Czech Republic

Sugar beet viruses transmitted by Polymyxa betae are very widespread in the Czech Republic. Beet soil-borne virus (BSBV) is present in almost all fields used for sugar beet growing, beet virus Q (BVQ) is present in about 50% of fields but beet necrotic yellow vein virus (BNYVV) is present in some limited regions only. It means that mixed infections of sugar beet by at least two viruses are quite common in the field. P. betae also occurs in almost all fields where sugar beet is now grown. Only two populations of P. betae not transmitting any virus were found. Cystosori of P. betae can harbour viruses without loosing infectivity for a very long time. We were able to detect these viruses in plants grown in soil stored dry for 12 years. BNYVV can cause serious yield losses under mideuropean conditions reaching up to 50% of sugar yield, whereas harmfulness BSBV and BVQ is questionable, because they also occur in fields with no problems concerning sugar beet growing. The host range of these viruses was studied. Both infect all types of beet (sugar fodder, red beet, mangold) and spinach and usually are detectable in root system only. Other chenopodiaceous plants are infected only by some virus strains. These strains are also able to spread into above-ground parts of plants.

Occurrence and distribution of sugar beet viruses in Lebanon

Occurrence and distribution of sugar beet viruses in Lebanon

Occurrence and distribution of sugar beet viruses in Lebanon

Field surveys were carried out in the main sugar beet growing areas of Lebanon to assess the occurrence and distribution of viral diseases. A total of 1002 samples from 115 commercial fields were serologically assessed for Beet Necrotic Yellow Vein Furovirus (BNYVV), Beet Yellows Closterovirus (BYV), Beet Mosaic Potyvirus (BtMV), Beet Western Yellow Luteovirus (BWYV) and Cucumber Mosaic Cucumovirus (CMV). ELISA tests revealed that 39.5% of samples were infected with one or more viruses. BtMV was the most common (56.5%), followed by BYV (29.5%), BNYVV (17%) and BWYV (11%). Mixed infections were detected in 5.2% of the samples. CMV was not encountered. Direct tissue printing of plants infected with BtMV, BYV and BWYV on a nitrocellulose membrane gave very strong positive reactions.

Measuring and modelling the effects of inoculation date and aphid flights on the secondary spread of Beet mosaic virus in sugar beet

The effect of the inoculation date on the spread of Beet mosaic virus (BtMV) in sugar beet field plots was studied. Two plants in the centre of each plot were inoculated with BtMV using Myzus persicae. The spread of the infection around these sources was monitored by inspecting the plants on two diagonal transects through the centre of the plot. Early inoculations resulted in a greater spread than late inoculations, but any inoculation before the onset of the aphid migration resulted in a similar-sized spread. The spread was concentrated in patches around the inoculated plants, and its rate was explained by vector pressure, as shown by regression analysis and a mechanistic simulation model. This vector pressure was quantified using data obtained by catching aphids in a green water trap in the crop, catching aphids in a 12 m high suction trap at a distant location, and infection of bait plants from adjacent virus source plants. The daily total aphid catches obtained by a suction trap provided the best statistical explanation for the spread of this virus. The parameter r, describing the relationship between vector pressure and the rate of disease progress, was remarkably robust. This parameter varied less than 10␋etween treatments (infection date) within a single experiment, and less than a factor two between four experiments performed at different sites in two years. The robustness of this parameter suggests that the spread of a potyvirus may be predicted on the basis of the initial infection date and vector abundance

Changes in Ribonuclease and Glucose-6-Phosphate Dehydrogenase Activities Induced by Beet Necrotic Yellow Vein Virus in Sugar Beet

Activities of host ribonucleases and glucose-6-phosphate dehydrogenase were studied in three cultivars (Monosvalof, Steffi and Rimini) of sugar beet differing in their resistance to beet necrotic yellow vein virus (BNYVV). No differences were found in the susceptibility of cultivars to BNYVV between mechanically inoculated and Polymyxa betae (a natural fungal vector of the virus) infected plants, but the culmination of reproduction curves of BNYVV in mechanically inoculated plants was observed one week earlier than in plants inoculated by means of P. betae. The activities of ribonucleases corresponded with virus multiplication. In roots, activities of ribonucleases reached a maximum at day 7; in leaves, maximum activity was found at day 21 in cv. Monosvalof, and at day 14 in cv. Steffi. The relatively resistant cultivar Rimini showed much lower activities. The activity of glucose-6-phosphate dehydrogenase was only slightly increased at the time of culmination of the BNYVV reproduction curve in cvs. Monosvalof and Steffi.

Specificity of TAS-ELISA for Beet Necrotic Yellow Vein Virus and Its Application for Determining Rhizomania Resistance in Field-Grown Sugar Beets.

Levels of beet necrotic yellow vein virus (BNYVV), as measured by triple-antibody sandwich-enzyme-linked immunosorbent assay (TAS-ELISA), were compared with biological evaluations in representative commercial and experimental sugar beet cultivars developed for production in the United States and ranging in their reactions to rhizomania from uniformly susceptible to highly resistant. TAS-ELISA was specific for BNYVV and did not react with related soilborne sugar beet viruses. Differences in absorbance (A405nm) values measured in eight cultivars closely correlated with the dosage and frequency of the Rz allele, which conditions resistance to BNYVV. A diploid (Rzrz) hybrid had a significantly lower absorbance value (less virus) than a similar triploid (Rzrzrz) hybrid. Cultivars that segregated (Rzrz:rzrz) had higher absorbance values than uniformly resistant (Rzrz) hybrids, as was expected. For all cultivars, absorbance values decreased as the season progressed. Absorbance value was significantly positively correlated with rhizomania disease index score and negatively correlated with individual root weight, plot root weight, and sugar yield. This information should be useful in resistance-breeding and -evaluation programs and in the sugar industry when considering cultivar choice, inoculum production, and future crop rotations.

Early-season predation impacts the establishment of aphids and spread of beet yellows virus in sugar beet

The potential of predators to impact the establishment of aphid vectors and the spread of beet yellows virus in sugar beet was examined.

The host range of beet yellowing viruses among common arable weed species

Twenty common arable weed species were inoculated using Myzus persicae to transmit beet yellows virus (BYV), beet mild yellowing virus (BMYV), and an isolate of beet western yellows viruses (BWYV) that did not infect beet. The viruses were detected by enzyme‐linked immunosorbent assay (ELISA), in which monoclonal antibodies distinguished between BMYV and BWYV, and by aphid transmissions to indicator host plants. Spergula arvensis, Stellaria media, Lamium purpureum and Papaver rhoeas were susceptible to all three viruses whereas Senecio vulgaris, Capsella bursa‐pastoris, Anagallis arvensis and Chrysanthemum segetum were susceptible to both BMYV and BWYV, and Matricaria perforata, Raphanus raphanistrum, Veronica persica, Urtica urens and Viola arvensis were susceptible to BWYV only. Atriplex patula, Chenopodium album and Portulaca oleracea were susceptible to BYV only. Myosotis arvensis, Silene alba, Poa annua and Solanum nigrum were not susceptible to any of the viruses. Portulaca oleracea was shown for the first time to be a host of BYV, and C. segetum a host of BMYV and BWYV. In spring 1991, 8% of weeds sampled in a field of autumn‐sown oilseed rape contained BWYV. Tests on weeds collected from an area of ‘set‐side’ adjacent to sugar beet showed that 3% contained BMYV and 3% BWYV. No sampled weeds were infected with BYV. The role of weeds in the epidemiology of sugar beet virus yellows is discussed.

Epidemiology of beet necrotic yellow vein virus in sugar beet at different initial inoculum levels in the presence or absence of irrigation

A field experiment was set up in 1988 to study the development of rhizomania disease of sugar beet at different inoculum levels of beet necrotic yellow vein virus (BNYVV) in soil. Five, tenfold different, inoculum levels were created by addition of the approximate amounts of 0, 0.5, 5, 50 and 500 kg infested soil per ha (the latter corresponding to 0.01% v/v calculated to the tillage layer). A drip irrigation treatment was applied to study the influence of soil moisture on disease. Susceptible sugar beet, cv. Regina, was grown for three consecutive years.

Distribution of Beet Necrotic Yellow Vein Virus, Beet Distortion Mosaic Virus, and an Unnamed Soilborne Sugar Beet Virus in Texas and New Mexico

The Texas sugar beet-growing area was surveyed to determine the incidence of beet necrotic yellow vein virus (BNYVV), beet distortion mosaic virus (BDMV), and an unnamed soilborne sugar beet virus designated as Texas 7 (Tx7). In late 1990, 302 soil samples were collected from seven Texas counties and one New Mexico county from fields scheduled for 1991 production. Sugar beet seed was planted in the soil samples, and root tissue was later harvested and tested by ELISA. Of 174 soil samples screened for BNYVV, 19 were positive. Of 128 samples tested for BNYVV and Tx7, 12 were positive for Tx7, three were positive for BNYVV, and 23 were positive for both BNYVV and Tx7 [...]

Epidemiology of beet necrotic yellow vein virus in sugar beet at different initial inoculum levels in the presence or absence of irrigation: Dynamics of inoculum

Using field plots where rhizomania had not previously been detected, different inoculum levels of beet necrotic yellow vein virus (BNYVV) were created by application of infested soil. A susceptible sugar beet cultivar (cv. Regina) was grown for two consecutive years (1988 and 1989), in the presence or absence of drip irrigation. In soil samples taken in spring 1989, the different initial inoculum levels of 1988 could be distinguished using a quantitative bioassay estimating most probable numbers (MPNs) of infective units per 100 g dry soil. The first sugar beet crop resulted in a tenthousandfold multiplication of inoculum of BNYVV (viruliferousPolymyxa betae). Mean MPNs of BNYVV ranged from 0.6 and 7 per 100 g soil for the lowest inoculum level to 630 and 1100 per 100 g for the highest level, in plots without and with irrigation, respectively. In spring 1990, MPNs had again increased. In both years, the initial inoculum level of 1988 had a significant linear effect on log-transformed MPNs of BNYVV determined. Log-transformed MPNs for 1990 and 1989 showed a positive linear correlation, despite a decreasing multiplication ratio at higher inoculum levels. Drip irrigation during one or two years enhanced the increase in MPN of BNYVV, which was reflected by the enhancement of multiplication ratios at all inoculum levels. The totalP. betae population was also higher after growing two irrigated crops than after growing two non-irrigated ones.