Varying Growth Conditions Research Articles

Cultivation of deep-sea bacteria from the Northwest Pacific Ocean and characterization of Limnobacter profundi sp. nov., a phenol-degrading bacterium

Despite previous culture-independent studies highlighting the prevalence of the order Burkholderiales in deep-sea environments, the cultivation and characterization of deep-sea Burkholderiales have been infrequent. A total of 243 deep-sea bacterial strains were isolated from various depths in the Northwest Pacific Ocean, with 33 isolates (13.6%) from a depth of 4000 m classified into Burkholderiales. Herein, we report the isolation and genome characteristics of strain SAORIC-580T, from a depth of 4000 m in the Northwest Pacific Ocean. The strain showed a close phylogenetic relationship with Limnobacter thiooxidans CS-K2T, sharing 99.9% 16S rRNA gene sequence identity. The complete whole-genome sequence of strain SAORIC-580T comprised 3.3 Mbp with a DNA G+C content of 52.5%. Comparative genomic analysis revealed average nucleotide identities between 79.4–85.7% and digital DNA-DNA hybridization values of 19.9–29.5% when compared to other Limnobacter genomes, indicating that the strain represents a novel species within the genus. Genomic analysis revealed unique adaptations to deep-sea conditions, including genes associated with phenol degradation, stress responses, cold adaptation, heavy metal resistance, signal transduction, and carbohydrate metabolism. The SAORIC-580T genome was found to be more abundant in the deep sea than at the surface in the trenches of the Northwest Pacific Ocean, suggesting adaptations to the deep-sea environment. Phenotypic characterization highlighted distinct differences from other Limnobacter species, including variations in growth conditions, enzyme activities, and phenol degradation capabilities. Chemotaxonomic markers of the strain included ubiquinone-10, major fatty acids such as C16:0, C16:1, and C18:1, and major polar lipids including phosphatidylethanolamine, phosphatidylglycerol, and diphosphatidylglycerol. Based on the polyphasic taxonomic data, it is concluded that strain SAORIC-580T (= KACC 21440T = NBRC 114111T) represents a novel species, for which the name Limnobacter profundi sp. nov. is proposed.

Establishment and characterization of novel spontaneously immortalized larval cell lines from sablefish Anoplopoma fimbria.

Sablefish Anoplopoma fimbria is a groundfish of the North PacificOceantypically found in sea floor habitat at depths to 2700m. Prized as a food fish with exceptionally high market value, sablefish aquaculture has been sought to provide a sustainable source of this fish to meet market demands. While commercial culture has successfully produced market-sized fish in Pacific coastal environments, production has been hampered by disease and the overall lack of information on sablefish health and immunology. To begin to address these knowledge gaps, herein we describe the isolation and characterization of spontaneously immortalized sablefish larval cell lines (AFL). Six sublines were established from pools of early yolk-sac larvae, while attempts to develop tissue-specific-derived cell lines were unsuccessful. The six yolk-sac larval cell lines each display two morphologies in culture, an elongated fibroblast-like cell type, and a rounded squamous or epithelial-like cell type. Cytogenetic characterization suggests that both cell types are diploid (2n = 48) with 24 pairs of chromosomes, 23 pairs of autosomes, and 1 pair of sex chromosomes. A small proportion (11%) of AFL cells display tetraploidy. Incubation temperature and medium composition experiments revealed HEPES buffered L-15 media containing 10-20% FBS at temperatures between 15 and 18° C yielded optimal cell growth. These growth characteristics suggest that sablefish larval cells display a robustness for varying growth conditions. The establishment of AFL cell lines provides a foundational tool to study the physiology, health, immunology, and cell and molecular biology of sablefish.

Optimization of Epitaxial Structures on GaN-on-Si(111) HEMTs with Step-Graded AlGaN Buffer Layer and AlGaN Back Barrier

Recently, crack-free GaN-on-Si growth technology has become increasingly important due to the high demand for power semiconductor devices with high performances. In this paper, we have experimentally optimized the buffer structures such as the AlN nucleation layer and step-graded AlGaN layer for AlGaN/GaN HEMTs on Si (111) substrate by varying growth conditions and thickness, which is very crucial for achieving crack-free GaN-on-Si epitaxial growth. Moreover, an AlGaN back barrier was inserted to reduce the buffer trapping effects, resulting in the enhancement of carrier confinement and suppression of current dispersion. Firstly, the AlN nucleation layer was optimized with a thickness of 285 nm, providing the smoothest surface confirmed by SEM image. On the AlN nucleation layer, four step-graded AlGaN layers were sequentially grown by increasing the Al composition from undermost layer to uppermost layer, meaning that the undermost one was close to AlN, and the uppermost was close to GaN, to reduce the stress and strain in the epitaxial layer gradually. It was also verified that the thicker step-graded AlGaN buffer layer is suitable for better crystalline quality and surface morphology and lower buffer leakage current, as expected. On these optimized buffer structures, the AlGaN back barrier was introduced, and the effects of the back barrier were clearly observed in the device characteristics of the AlGaN/GaN HEMTs on Si (111) substrate such as the transfer characteristics, output characteristics and pulsed I-V characteristics.

A novel multi-epitope peptide vaccine candidate targeting hepatitis E virus: An in silico approach.

Hepatitis E virus (HEV) is a foodborne virus transmitted through the faecal-oral route that causes viral hepatitis in humans worldwide. Ever since its discovery as a zoonotic agent, HEV was isolated from several species with an expanding range of hosts. HEV possesses several features of other RNA viruses but also has certain HEV-specific traits that make its viral-host interactions inimitable. HEV leads to severe morbidity and mortality in immunocompromised people and pregnant women across the world. The situation in underdeveloped countries is even more alarming. Even after creating a menace across the world, we still lack an effective vaccine against HEV. Till date, there is only one licensed vaccine for HEV available only in China. The development of an anti-HEV vaccine that can reduce HEV-induced morbidity and mortality is required. Live attenuated and killed vaccines against HEV are not accessible due to the lack of a tolerant cell culture system, slow viral replication kinetics and varying growth conditions. Thus, the main focus for anti-HEV vaccine development is now on the molecular approaches. In the current study, we have designed a multi-epitope vaccine against HEV through a reverse vaccinology approach. For the first time, we have used viral ORF3, capsid protein and polyprotein altogether for epitope prediction. These are crucial for viral replication and persistence and are major vaccine targets against HEV. The proposed in silico vaccine construct comprises of highly immunogenic and antigenic T-cell and B-cell epitopes of HEV proteins. The construct is capable of inducing an effective and long-lasting host immune response as evident from the simulation results. In addition, the construct is stable, non-allergic and antigenic for the host. Altogether, our findings suggest that the in silico vaccine construct may be useful as a vaccine candidate for preventing HEV infections.

Salicylic and tartaric ions co-doped polypyrrole to enhance the corrosion protection of polypyrrole/zinc bilayer coating on ZK60 magnesium alloy in Hank's solution

To enhance the corrosion protection of the polypyrrole/zinc (PPy/Zn) bilayer coating on biodegradable ZK60 magnesium alloy in Hank's solution at 37 °C, sodium salicylate (NaSA) in different concentrations (CNaSA, 0.5–4.0 mM) is selected as a co-doping reagent of tartrate anions (TA−), and an electropolymerization method that combines potentiostatic and galvanostatic synthesis is developed to prepare PPy(TA + SA)/Zn bilayer coatings. The co-doping of SA− suppresses the growth of PPy and notably increases its synthesis potential (Epoly) with increasing CNaSA. The co-doped PPy(TA + SA) films have a surface morphology and thickness similar to the PPy(TA) film. However, their chemical composition, structure, and adhesion strength change notably due to their varying growth conditions. In the long-term immersion test of PPy(TA + SA)/Zn/ZK60 samples, the PPy(TA + SA)/Zn coatings exhibit high stability, and the coating prepared with CNaSA = 1.0 mM has the most prolonged protection time (54 ± 1.5 d). As CNaSA increases, the co-doped PPy(TA + SA) film becomes heavily over-oxidized to produce more defects on PPy chains due to the high Epoly, ultimately decreasing the protection time to 40 ± 1.0 d. The corresponding mechanism involved is thoroughly discussed.

Abstract 2186: Bacterial lung cancer therapeutics from soil bacteria in New York City

Abstract The microbiome's diverse functions in human health have generated increasing interest in using live bacteria for cancer therapy. Due to their natural presence in colon, lung and breast tissue, bacterial therapies have been augmented using synthetic biology in order to treat infections, inflammation, and cancer. One major challenge is finding safe and effective host species and therapeutic payloads for a particular type of cancer. Here we explored the vast diversity of microbial isolates in the environment as a valuable source of novel therapeutic compounds that can be expressed by bacteria. Specifically, we isolated and identified soil bacteria from 25 local parks, and investigated their secreted compounds for anti-cancer activity using monolayer and 3D-spheroid cultures of lung cancer. Through metagenomic analysis, toxicology assays, varied growth conditions, and bacteria-cancer co-culture experiments, we found Bacillus spp. isolates from Manhattan parks' soil that secreted products with high, dose-dependent cytotoxicity against lung cancer models. We also demonstrate that Bacillus subtilis, a model organism for gram-positive bacteria, can colonize lung cancer tumor spheroids, pointing to its use as a viable strain for bacteria cancer therapy. The work presented here underscores the potential of harnessing environmental microbial diversity for the development of gram positive species and their compounds as cancer therapeutics. Citation Format: Dhruba Deb, Tal Danino. Bacterial lung cancer therapeutics from soil bacteria in New York City [abstract]. In: Proceedings of the American Association for Cancer Research Annual Meeting 2024; Part 1 (Regular Abstracts); 2024 Apr 5-10; San Diego, CA. Philadelphia (PA): AACR; Cancer Res 2024;84(6_Suppl):Abstract nr 2186.

Length-Weight-Age Relationship of Schizothorax eurystomus Kessler, 1872 and Comparison to Other Snow Trout Species in Central Asia

This study presents a comprehensive analysis of the length-weight relationship, condition factors, and age of Schizothorax eurystomus in the Shakhimardan River basin in Central Asia, along with a comparative perspective to other Schizothorax species in the region. The study found that S. eurystomus exhibits positive allometric growth, which is consistent with similar patterns observed in this species from the Syr Darya River basin. The two analyzed condition factors showed mean values within the normal range, indicating good feeding and environmental conditions. However, significant disparities between minimum and maximum values of these factors indicated varied growth conditions which may be influenced by anthropogenic factors. Age estimation using opercular bones showed variations in the total length among fish of the same age, and a clear age distribution pattern across different sites. Younger fish predominantly inhabited the shallower, warmer, and lower sections of the river, which is impacted by agricultural water diversion, while older specimens were found in areas with higher discharge and deeper pools. Overall, this research provides valuable insights into the life history traits of S. eurystomus, underlining the need for sustainable fishery management and conservation strategies in the Shakhimardan River basin. The findings also emphasize the importance of considering habitat quality and anthropogenic pressures regarding understanding both fish population dynamics and growth patterns.

Lysine acetylation of histone acetyltransferase adaptor protein ADA2 is a mechanism of metabolic control of chromatin modification in plants.

Histone acetylation is a predominant active chromatin mark deposited by histone acetyltransferases (HATs) that transfer the acetyl group from acetyl coenzyme A (acetyl-CoA) to lysine ε-amino groups in histones. GENERAL CONTROL NON-REPRESSED PROTEIN 5 (GCN5) is one of the best-characterized HATs and functions in association with several adaptor proteins such as ADA2 within multiprotein HAT complexes. ADA2-GCN5 interaction increases GCN5 binding to acetyl-CoA and stimulates its HAT activity. It remains unclear whether the HAT activity of GCN5 (which acetylates not only histones but also cellular proteins) is regulated by acetyl-CoA levels, which vary greatly in cells under different metabolic and nutrition conditions. Here we show that the ADA2 protein itself is acetylated by GCN5 in rice cells. Lysine acetylation exposes ADA2 to a specific E3 ubiquitin ligase and reduces its protein stability. In rice plants, ADA2 protein accumulation reversely parallels its lysine acetylation and acetyl-CoA levels, both of which are dynamically regulated under varying growth conditions. Stress-induced ADA2 accumulation could stimulate GCN5 HAT activity to compensate for the reduced acetyl-CoA levels for histone acetylation. These results indicate that ADA2 lysine acetylation that senses cellular acetyl-CoA variations is a mechanism to regulate HAT activity and histone acetylation homeostasis in plants under changing environments.

Using sprouting behaviour to quantify physiological ageing of seed tubers of potato (Solanum tuberosum L.)

The physiological age of potato seed tubers evolves with chronological age, influenced by growth history and storage conditions. Effective quantification of physiological ageing requires a dynamic and flexible modelling approach. In this study, we conducted three cycles of field production and storage of seed tubers, using contrasting and widely grown cultivars. Different storage temperatures were employed as the sole treatment to introduce variation in the physiological age of the same cultivar. Throughout the storage seasons, periodic assessments of sprouting behaviour were conducted, both at the onset and at the end of a sprouting test. The total sprout dry weight per tuber produced in the sprouting test emerged as the best measure of seed tuber vigour, exhibiting cultivar-specific responses to storage temperatures. To capture these diverse sprouting behaviours, we devised a piecewise sprouting behaviour function. This is the first mathematical model that effectively describes the evolving sprouting patterns and provides biologically relevant parameters for the analysis of cultivar-specific sprouting trends. The temporal parameters of the function displayed sensitivity to storage temperature and year-to-year variation in growth conditions, highlighting distinct physiological phases. Consequently, the function facilitated insightful analysis of these key factors, enabling interpretation of underlying processes involved in the physiological ageing of potato seed tubers.

Leucaena interspecific hybrid 'KX4-Hawaii' as a source of agricultural biomass in a water-scarce small island developing state.

Leucaena leucocephala is a useful multipurpose tree species for agroforestry systems, but traditional seeded cultivars often become weedy and invasive. A seedless hybrid cultivar, 'KX4-Hawaii', offers a potential solution to this problem. However, relevant agronomic information and information on the performance of 'KX4-Hawaii' under varying growth conditions is required. The goal of this research was to evaluate 'KX4-Hawaii' as a source of agricultural biomass in Barbados, a small island developing state with limited arable land. 'KX4-Hawaii' air layers were imported into Barbados to create stock trees. Air layering was used to create propagation material and a field study was established with a 'KX4-Hawaii' hedgerow planted as a field border. Three plant spacings (50, 75, and 100 cm) were evaluated and data on the growth and biomass yields of the trees were collected at 4-month intervals. Precipitation data were used to investigate climatic effects on 'KX4-Hawaii' productivity. 'KX4-Hawaii' was successfully propagated via air layers and could be planted directly in the field with irrigation. All recorded growth and biomass yields were correlated with precipitation. However, the woody (lignified stems and branches) biomass was more responsive to precipitation than the green (leaves and green tender stems) biomass and made up a large fraction of the total biomass produced. 'KX4-Hawaii' was productive even under drought conditions and biomass yields per meter of hedgerow increased with closer spacings. Of the tested spacing treatments, 75 cm was optimum for a 4-month pruning interval under the conditions seen in Barbados as it produced similar yields to the 50 cm spacing treatment but would require less propagation material.

Leaf Area Prediction of Pennywort Plants Grown in a Plant Factory Using Image Processing and an Artificial Neural Network

The leaf is a primary part of a plant, and examining the leaf area is crucial in understanding growth and plant physiology. Accurately estimating leaf area is key to this understanding. This study proposed a methodology for the non-destructive estimation of leaf area in pennywort plants using image processing and an artificial neural network (ANN) model. The image processing method involved a series of steps, including grayscale conversion, histogram equalization, binary masking, and region filling, achieving an accuracy of around 96.6%. The ANN model, trained with 70% of a dataset, exhibited high correlations of 97.1% in training and 96.6% in testing phases, with leaf length and width significantly impacting the model output. A comparative analysis revealed the superior performance of the ANN model over the image processing method, demonstrating higher R2 values (>0.99) and lower errors. Furthermore, it showed the impact of diverse LED light combinations and nutrient levels (electrical conductivity, EC) on pennywort plant growth, indicating that the R70:B30 LED light ratio with nutrient level 2 (2.0 dS·m−1) fostered the most favorable growth for pennywort plants. The non-destructive nature, simplicity, and speed of the ANN model in estimating leaf area based on easily obtainable measurements of length and width render it an accessible and accurate tool for plant growth assessment in controlled environments. This approach offers opportunities for future studies, tracking changes in leaf areas under varied growth conditions without harming the plant, thus enhancing precision in research.

Altering environmental conditions induce shifts in simulated deep terrestrial subsurface bacterial communities-Secretion of primary and secondary metabolites.

The deep terrestrial subsurface (DTS) harbours a striking diversity of microorganisms. However, systematic research on microbial metabolism, and how varying groundwater composition affects the bacterial communities and metabolites in these environments is lacking. In this study, DTS groundwater bacterial consortia from two Fennoscandian Shield sites were enriched and studied. We found that the enriched communities from the two sites consisted of distinct bacterial taxa, and alterations in the growth medium composition induced changes in cell counts. The lack of an exogenous organic carbon source (ECS) caused a notable increase in lipid metabolism in one community, while in the other, carbon starvation resulted in low overall metabolism, suggesting a dormant state. ECS supplementation increased CO2 production and SO4 2- utilisation, suggesting activation of a dissimilatory sulphate reduction pathway and sulphate-reducer-dominated total metabolism. However, both communities shared common universal metabolic features, most probably involving pathways needed for the maintenance of cell homeostasis (e.g., mevalonic acid pathway). Collectively, our findings indicate that the most important metabolites related to microbial reactions under varying growth conditions in enriched DTS communities include, but are not limited to, those linked to cell homeostasis, osmoregulation, lipid biosynthesis and degradation, dissimilatory sulphate reduction and isoprenoid production.

High-throughput, microscopy-based screening and quantification of genetic elements.

Synthetic biology relies on the screening and quantification of genetic components to assemble sophisticated gene circuits with specific functions. Microscopy is a powerful tool for characterizing complex cellular phenotypes with increasing spatial and temporal resolution to library screening of genetic elements. Microscopy-based assays are powerful tools for characterizing cellular phenotypes with spatial and temporal resolution and can be applied to large-scale samples for library screening of genetic elements. However, strategies for high-throughput microscopy experiments remain limited. Here, we present a high-throughput, microscopy-based platform that can simultaneously complete the preparation of an 8 × 12-well agarose pad plate, allowing for the screening of 96 independent strains or experimental conditions in a single experiment. Using this platform, we screened a library of natural intrinsic promoters from Pseudomonas aeruginosa and identified a small subset of robust promoters that drives stable levels of gene expression under varying growth conditions. Additionally, the platform allowed for single-cell measurement of genetic elements over time, enabling the identification of complex and dynamic phenotypes to map genotype in high throughput. We expected that the platform could be employed to accelerate the identification and characterization of genetic elements in various biological systems, as well as to understand the relationship between cellular phenotypes and internal states, including genotypes and gene expression programs.

Adjusting nitrogen fertilization to spatial variations in growth conditions in silvopastoral systems for improved nitrogen use efficiency

Grass swards in silvopastoral systems have a lower herbage production near trees than open grassland. This is related to a lower nitrogen (N) uptake in an area close to the tree lines. The N use efficiency for the whole field can then be improved when N input is spatially adjusted and the overall amount reduced. We performed a 2-year field experiment to gain insights into this idea for making savings on N inputs by studying the response of the grass sward to fertilizer N input in relation to the distance from trees. We hypothesized an interaction between N input rate and position to the tree line on grassland herbage production and N uptake and, accordingly, N use efficiency. The field trial was carried out in a silvopastoral system in Germany consisting of the factors year (2019 and 2020), position (2.5, 6.5 and 24.5 m distances to tree line), annual N application rate (0, 15 and 30 g N m−2) and harvest date (four harvests per year). We found significant interactions between position × N rate for all target variables, and usually also in interactions with the harvest date or year. The N application close to trees at a distance < 6.5 m had in most cases no significant influence on herbage production but significantly increased herbage production by up to 35% at positions further away. Omitting the N fertilization in a corridor of 6.5 m near the trees would contribute directly to the saving of fertilizer N without a negative trade-off in herbage production.

Subtilisin 3 production from Microsporum canis is independent of keratin substrate availability.

Dermatophytes are highly infectious fungi that cause superficial infections in keratinized tissues in humans and animals. This group of fungi is defined by their ability to digest keratin and encompasses a wide range of species. We investigated a critical adhesion protein, subtilisin 3, utilized by Microsporum canis during initial stages of infection, analyzing its production and expression under varying growth conditions. Additionally, as this protein must be expressed and produced for dermatophyte infections to occur, we developed and optimized a diagnostic antibody assay targeting this protein. Subtilisin 3 levels were increased in culture when grown in baffled flasks and supplemented with either l-cysteine or cat hair. As subtilisin 3 was also produced in cultures not supplemented with keratin or cysteine, this study demonstrated that subtilisin 3 production is not reliant on the presence of keratin or its derivatives. These findings could help direct future metabolic studies of dermatophytes, particularly during the adherence phase of infections.

Spatial and Texture Analysis of Root System distribution with Earth mover’s Distance (STARSEED)

PurposeRoot system architectures are complex and challenging to characterize effectively for agronomic and ecological discovery.MethodsWe propose a new method, Spatial and Texture Analysis of Root SystEm distribution with Earth mover’s Distance (STARSEED), for comparing root system distributions that incorporates spatial information through a novel application of the Earth Mover’s Distance (EMD).ResultsWe illustrate that the approach captures the response of sesame root systems for different genotypes and soil moisture levels. STARSEED provides quantitative and visual insights into changes that occur in root architectures across experimental treatments.ConclusionSTARSEED can be generalized to other plants and provides insight into root system architecture development and response to varying growth conditions not captured by existing root architecture metrics and models. The code and data for our experiments are publicly available: https://github.com/GatorSense/STARSEED.

Growth Features of Bi2Te3Sb1.5 Films on Polyimide Substrates Obtained by Pulsed Laser Deposition.

Thermoelectric materials in the form of thin films are used to create a wide variety of sensors and devices. The efficiency of these devices depends on the quality and efficiency of the thermoelectric materials obtained in the form of thin films. Earlier, we demonstrated that it is possible to obtain high-performance Bi2Te3Sb1.5 films less than 1 μm thick on polyimide substrates by using the PLD method, and determined optimal growth conditions. In the current work, the relationship between growth conditions and droplet fraction on the surface, microstructure, grain size, film thickness and chemical composition was studied. A power factor of 5.25 μW/cm×K2 was achieved with the reduction of droplet fraction on the film surface to 0.57%. The dependencies of the film thickness were studied, and the effect of the thickness on the efficiency of the material is shown. The general trend in the growth dynamics for Bi2Te3Sb1.5 films we obtained is the reduction of crystalline size with Pressure-Temperature (PT) criterion. The results of our work also show the possibility of a significant reduction of droplet phase with simultaneous management of crystalline features and thermoelectric efficiency of Bi2Te3Sb1.5 films grown on polyimide substrates by varying growth conditions.

Characterization of Omega-3 and Omega-6 Fatty Acid Accumulation in Chlorococcum novae-angliae Microalgae Grown under Various Culture Conditions

Chlorococcum novae-angliae is a terrestrial green microalgae species with remarkable potential to synthesize omega-3 (ω-3) and omega-6 (ω-6) fatty acids. In this study, Chlorococcum novae-angliae has been subjected to varying growth conditions (light, nitrogen, salinity, and temperature) to investigate the accumulation of ω-3 and ω-6 fatty acids. Among tested growth conditions, eicosapentaenoic acid, α-linoleic acid, γ-linoleic acid, and arachidonic acid were enhanced by nitrogen limitation. Significant increases were observed in concentration of linoleic acid, an essential precursor molecule for the production ω-6 fatty acids under decreased nitrogen concentrations. Despite the lowest biomass growth, monounsaturated fatty acids and docosahexaenoic acid were increased by 14.4% and 8.7% under low light intensities, respectively. Meanwhile, the highest concentrations of palmitic acid (C16:0), stearic acid (C18:0), and oleic acid (18:1cis-9) were also detected under nitrogen limitation. Total lowest fatty acid concentrations were obtained under increased salinity while low temperature conditions heavily inhibited cellular growth.

Identification of Photosynthetic Pigments extracted from Phaeodactylum tricornutum as High-Value Bioactive Compounds

The present study intends to provide information about a promising source of unique bioactive compounds and for choosing the favorable growth conditions of the diatom “Phaeodactylum tricornutum” suited to different applications. P. tricornutum was cultivated in the temperature range of 20-35°C, light intensity range of 275-538 μmolm-2s-1 and aeration rate range of 2.5- 3.5 Lmin-1. P. tricornutum extracts were analyzed in terms of photosynthetic pigment composition in comparison with a well-known green microalgae Chlorella miniata using the C18 column. Lutein, canthaxanthin, β-carotene and chlorophyll a were detected in C. miniata whereas in P. tricornutum extracts, chlorophyll a, zeaxanthin and β-carotene were identified. Quantitatively, P. tricornutum was distinguished to have greater amount of chlorophyll-a (113.66 mgmL-1) while C. miniata was predominated with a β-carotene content (14.20 mgmL-1). Considerable amounts of pigments were encountered in all of the P. tricornutum extracts obtained under the varying growth conditions. As the temperature was increased and the light intensity was decreased, the accumulation of chlorophyll a and β-carotene increased at the highest aeration rate. Conversely, at the highest light intensity of 538 μmolm-2s-1 and an aeration rate of 3.0 to 3.5 Lmin-1, the zeaxanthin content was maximized and limited at the temperature values over 27.5°C.

Distribution of fitness effects of cross-species transformation reveals potential for fast adaptive evolution

Bacterial transformation, a common mechanism of horizontal gene transfer, can speed up adaptive evolution. How its costs and benefits depend on the growth environment is poorly understood. Here, we characterize the distributions of fitness effects (DFE) of transformation in different conditions and test whether they predict in which condition transformation is beneficial. To determine the DFEs, we generate hybrid libraries between the recipient Bacillus subtilis and different donor species and measure the selection coefficient of each hybrid strain. In complex medium, the donor Bacillus vallismortis confers larger fitness effects than the more closely related donor Bacillus spizizenii. For both donors, the DFEs show strong effect beneficial transfers, indicating potential for fast adaptive evolution. While some transfers of B. vallismortis DNA show pleiotropic effects, various transfers are beneficial only under a single growth condition, indicating that the recipient can benefit from a variety of donor genes to adapt to varying growth conditions. We scrutinize the predictive value of the DFEs by laboratory evolution under different growth conditions and show that the DFEs correctly predict the condition at which transformation confers a benefit. We conclude that transformation has a strong potential for speeding up adaptation to varying environments by profiting from a gene pool shared between closely related species.