Variation In Residual Feed Intake Research Articles

Genes involved in the cholecystokinin receptor signaling map were differentially expressed in the jejunum of steers with variation in residual feed intake

The jejunum is a critical site for nutrient digestion and absorption, and variation in its ability to take up nutrients within the jejunum is likely to affect feed efficiency. The purpose of this study was to determine differences in gene expression in the jejunum of beef steers divergent for residual feed intake (RFI) in one cohort of steers (Year 1), and to validate those genes in animals from a second study (Year 2). Steers from Year 1 (n = 16) were selected for high and low RFI. Jejunum mucosal tissue was obtained for RNA-seq. Thirty-two genes were differentially expressed (PFDR≤0.15), and five were over-represented in pathways including inflammatory mediator, cholecystokinin receptor (CCKR) signaling, and p38 MAPK pathways. Several differentially expressed genes (ALOX12, ALPI, FABP6, FABP7, FLT1, GSTA2, MEF2B, PDK4, SPP1, and TTF2) have been previously associated with RFI in other studies. Real-time qPCR was used to validate nine differentially expressed genes in the Year 1 steers used for RNA-seq, and in the Year 2 validation cohort. Six genes were validated as differentially expressed (P<0.1) using RT-qPCR in the Year 1 population. In the Year 2 population, five genes displayed the same direction of expression as the Year 1 population and 3 were differentially expressed (P<0.1). The CCKR pathway is involved in digestion, appetite control, and regulation of body weight making it a compelling candidate for feed efficiency in cattle, and the validation of these genes in a second population of cattle is suggestive of a role in feed efficiency.

Effect of residual feed intake on meat quality in fattening Charolais bulls fed two contrasting diets

The selection of more efficient animals for breeding is of both economic and environmental interest to the industry. The aim of this study was to evaluate the influence of the animals' residual feed intake (RFI) ranking in interaction with the type of diet on the meat quality of Charolais beef cattle. Indeed, several biological mechanisms are associated with RFI, especially when animals are fed high starch-diets. It is therefore possible that quality parameters may show greater changes due to RFI in the context of high starch diets compared to high forage diets.An 84-day feed efficiency trial followed immediately by a second 112-day feed efficiency trial was conducted with a total of 100 animals fed either maize- or grass-diets for 196-days. At the end of the 84-day period, the 32 most divergent RFI animals (16 extreme RFI animals per diet, 8 RFI+ and 8 RFI-) were identified. They were slaughtered after 112-days of finishing. The Longissimus thoracis was characterised in terms of nutritional and sensory quality.RFI had no effect on lab colour, muscle shear force, total fat, fatty acid ratios and most of the total fatty acid content (especially n-3) irrespective of the diet. However, more efficient animals (RFI-) showed higher CLA contents compared to less efficient animals (RFI+) regardless of the diet and also a lower n6/n3 ratio only in animals fed the maize diets. Diet also had a significant effect on lipid and FA content as well as on FA composition.

Some plasma biomarkers of residual feed intake in beef cattle remain consistent regardless of intake level

This study investigated whether plasma biomarkers of residual feed intake (RFI), identified under ad libitum feeding conditions in beef cattle, remained consistent during feed restriction. Sixty Charolais crossbred young bulls were divided into two groups for a crossover study. Group A was initially fed ad libitum (first test) and then restricted (second test) on the same diet, while Group B experienced the opposite sequence. Blood samples were collected from the 12 most divergent RFI animals in each group at the end of the first test and again after the second test. 12 plasma variables consistently increased, while three consistently decreased during feed restriction (FDR < 0.05). Only two metabolites, α-aminoadipic acid for Group A and 5-aminovaleric acid for Group B, were associated with RFI independent of feed intake level (FDR < 0.05), demonstrating moderate-to-high repeatability across feeding levels (intraclass correlation coefficient ≥ 0.59). Notably, both metabolites belong to the same metabolic pathway: lysine degradation. These metabolites consistently correlated with RFI, irrespective of fluctuations in feed intake, indicating a connection to individual metabolic processes influencing feed efficiency. These findings suggest that a portion of RFI phenotypic variance is inherent to an individual’s metabolic efficiency beyond variations in feed intake.

1H-NMR-Based Plasma Metabolomic Profiling of Crossbred Beef Cattle with Divergent RFI Phenotype

This study focused on exploring the metabolomic profiles of crossbred beef cattle with varying levels of residual feed intake (RFI), a measure of feed efficiency in beef cattle. Sixty-seven crossbred growing beef steers (BW = 277 ± 29.7 kg) were subjected to a high-forage total mixed ration for 64 days to determine their RFI phenotypes. At the end of the 64d feeding trial, beef steers were divided into two groups based on their RFI values: low (or negative)-RFI beef steers (n = 28; RFI = −1.08 ± 0.88 kg/d) and high (or positive)-RFI beef steers (n = 39; RFI = 1.21 ± 0.92 kg/d). Blood samples were collected, and plasma samples were analyzed using Nuclear Magnetic Resonance spectroscopy, resulting in the identification of 50 metabolites. The study found a distinct metabolomic signature associated with RFI status. Eight metabolites, including amino acids (tyrosine, glycine, valine, leucine, and methionine) and other compounds (dimethyl sulfone, 3-hydroxy isovaleric acid, citric acid, creatine, and L-carnitine), showed differential abundance between low- and high-RFI groups. Specifically, tyrosine, glycine, and dimethyl sulfone exhibited significant specificity and sensitivity, which produced a discriminatory model with an area under the receiver operating characteristic (ROC) curve of 0.7, making them potential markers for RFI. A logistic regression model incorporating these biomarkers effectively distinguished between high- and low-RFI steers, with a threshold cutoff point of 0.48, highlighting a distinctive metabolite profile associated with efficient nutrient utilization in low-RFI cattle. The logistic regression model, incorporating these biomarkers, holds promise for accurately categorizing RFI values, providing insights into the metabolic basis of feed efficiency in beef cattle.

Characterization of rumen microbiome and immune genes expression of crossbred beef steers with divergent residual feed intake phenotypes

We investigated whole blood and hepatic mRNA expressions of immune genes and rumen microbiome of crossbred beef steers with divergent residual feed intake phenotype to identify relevant biological processes underpinning feed efficiency in beef cattle. Low-RFI beef steers (n = 20; RFI = − 1.83 kg/d) and high-RFI beef steers (n = 20; RFI = + 2.12 kg/d) were identified from a group of 108 growing crossbred beef steers (average BW = 282 ± 30.4 kg) fed a high-forage total mixed ration after a 70-d performance testing period. At the end of the 70-d testing period, liver biopsies and blood samples were collected for total RNA extraction and cDNA synthesis. Rumen fluid samples were also collected for analysis of the rumen microbial community. The mRNA expression of 84 genes related to innate and adaptive immunity was analyzed using pathway-focused PCR-based arrays. Differentially expressed genes were determined using P-value ≤ 0.05 and fold change (FC) ≥ 1.5 (in whole blood) or ≥ 2.0 (in the liver). Gene ontology analysis of the differentially expressed genes revealed that pathways related to pattern recognition receptor activity, positive regulation of phagocytosis, positive regulation of vitamin metabolic process, vascular endothelial growth factor production, positive regulation of epithelial tube formation and T-helper cell differentiation were significantly enriched (FDR < 0.05) in low-RFI steers. In the rumen, the relative abundance of PeH15, Arthrobacter, Moryella, Weissella, and Muribaculaceae was enriched in low-RFI steers, while Methanobrevibacter, Bacteroidales_BS11_gut_group, Bacteroides and Clostridium_sensu_stricto_1 were reduced. In conclusion, our study found that low-RFI beef steers exhibit increased mRNA expression of genes related to immune cell functions in whole blood and liver tissues, specifically those involved in pathogen recognition and phagocytosis regulation. Additionally, these low-RFI steers showed differences in the relative abundance of some microbial taxa which may partially account for their improved feed efficiency compared to high-RFI steers.

Residual feed intake is related to metabolic and inflammatory response during the preweaning period in Italian Simmental calves

Residual Feed Intake (RFI) is defined as the difference between measured and predicted intake. Understanding its biological regulators could benefit farm profit margins. The most-efficient animals (M-Eff) have observed intake smaller than predicted resulting in negative RFI, whereas the least-efficient (L-Eff) animals have positive RFI. Hence, this observational study aimed at retrospectively comparing the blood immunometabolic profile in calves with divergent RFI during the preweaning period. Twenty-two Italian Simmental calves were monitored from birth through 60 d of age. Calves received 3 L of colostrum from their respective dams. From 2 to 53 d of age, calves were fed a milk replacer twice daily, whereas from 54 to 60 d (i.e., weaning) calves were stepped down to only one meal in the morning. Calves had ad libitum access to concentrate and intakes were recorded daily. The measurement of BW and blood samples were performed at 0, 1, 7, 14, 21, 28, 35, 45, 54, and 60 d of age. Calves were ranked and categorized as M-Eff or L-Eff according to the median RFI value. Median RFI was -0.06 and 0.04 kg of DMI/d for M-Eff and L-Eff, respectively. No evidence for group differences was noted for colostrum and plasma IgG concentrations. Although growth rate was not different, as expected, (0.67 kg/d [95% CI = 0.57-0.76] for both L-Eff and M-Eff) throughout the entire preweaning period (0-60 d), starter intake was greater in L-Eff compared with M-Eff calves (+36%). Overall, M-Eff calves had a greater gain-to-feed ratio compared with L-Eff calves (+16%). Plasma ceruloplasmin, myeloperoxidase, and reactive oxygen metabolites concentrations were greater in L-Eff compared with M-Eff calves. Compared with L-Eff, M-Eff calves had an overall greater plasma concentration of globulin, and γ-glutamyl transferase (indicating a better colostrum uptake) and Zn at 1 d. Retinol and urea were overall greater in L-Eff. The improved efficiency in nutrient utilization observed in M-Eff was paired with a lower grade of oxidative stress and systemic inflammation. L-Eff may have had greater energy expenditure to support the activation of the immune system.

325 Understanding Variation in Residual Feed Intake of Brahman Steers Fed Two Different Diets

Abstract Improving feed efficiency in cattle is a long-standing aim of the beef industry. However, discrepancies in the ranking of bulls based on the diets used and calculation methods employed for defining feed efficiency have been observed. Hence, the objective of this research was to assess the extent to which different factors influence feed efficiency in Brahman steers. Individual DMI and ADG were measured, and residual feed intake (RFI) calculated using linear regression of DMI on ADG and midtest metabolic body weight. Eight-nine steers were initially fed a low-protein diet (LP, 8.8% CP) for 70 days, followed by a high-protein (HP, 13.5% CP) diet for another 70 days. The genetic variation among steers and the proportion of Bos indicus genes were determined using the GGP Indicus 50K assay (Neogen Corporation, Ipswich, Australia). Rumen bacteriome variation was determined with 16S rRNA gene sequencing of rumen fluid collected before and after feeding. Daily diet refusals were visually scored for the proportion of pellets versus hay and expressed as a diet selection index (1 to 3). Organic matter digestibility (OMD) was determined using total feces collection in metabolism crates. Plasma urea nitrogen (PUN) was measured in blood samples collected at four time points. The diet-animal fractionation of nitrogen isotopes (Δ15Ntail hair) was quantified in tail hair using isotope-ratio mass spectroscopy to indicate differences in nitrogen metabolism. Finally, carcass characteristics were determined at slaughter. Including carcass fat depth improved (P = 0.01) DMI prediction (R2 increased from 78.4 to 80.4%) in the LP diet but had a smaller effect (P = 0.39) in the HP diet (R2 increased from 75.0 to 75.2%). In the LP diet, the variation in carcass fat-correct RFI (RFIc) could be explained by DMI (14.5% of the variation), rumen bacteriome (5.89%), diet selection index (3.08%), PUN (1.88%), genetic distance (0.76%) and OMD (0.50%), accounting for a total of 26.6% of the RFIc variation. In the HP diet, the regression model explained 35.3% of the RFIc variation, with DMI explaining 25.9%, diet selection index 7.19%, rumen bacteriome 1.02%, genetic distance 0.73% and Δ15Ntail hair 0.50%. In conclusion, this study highlights the importance of measuring diet selection to accurately determine RFI in cattle. The results also suggest that variations in the rumen bacteriome and nitrogen metabolism parameters play a role in individual variations of feed efficiency. However, most of the variation in feed efficiency remained unexplained.

PSVIII-A-3 Activity Behavior and Growth Performance During Summer of Grazing Beef Heifers with Divergent Residual Feed Intake

Abstract Concerns about sustainability of beef production systems generate an interest in improved feed efficiency; however, there is a lack of research evaluating cattle activity budgets in response to the interaction between residual feed intake (RFI) and environment while grazing. Lying behavior and activity can provide insight into how animals interact with the environment and serve as an indicator of animal comfort. Furthermore, exposure to severe environmental factors can change behavioral patterns and impair animal performance. Therefore, this study evaluated activity budgets and performance in grazing beef heifers with divergent residual feed intake (RFI) during the summer season. From July to August 2022, forty-four crossbred beef heifers [358 ± 4.78 kg of body weight (BW); approximately 14 months of age] previously tested for RFI in drylot and classified as more (n = 21; LOW-RFI = -0.9 ± 0.70) or less feed efficient (n = 23; HIGH-RFI = 1.3 ± 1.00) were grazed at 2.72 AUM/ha over 7 wk in Alberta, Canada. IceRoboticTM pedometers (IceQube+) were used to track 24-hr heifer activity budgets [n = 43; total steps and lying and standing time (min/d and min/h) for 36 d]. Full BW was obtained on d -1, 0, 14, 28, 42, and 43 while fat scan on rib and rump were measured by ultrasound (Aloka 500 V diagnostic real-time) on d 0 and 42. Air temperature, relative humidity, wind speed and solar radiation information were collected within 1 km of the grazed area to calculate the Comprehensive Climate Index (CCI). Based on CCI, weather conditions were considered to impose risk to cause mild, moderate, severe, and extreme stress for 5, 18, 7, and 1 days, respectively. For BW, average daily gain (ADG), rump (RF) and rib fat (RiF), the data were analyzed as a completely randomized design, while behavior activity included repeated measures. An RFI x day interaction was observed for lying and standing times (P = 0.02) and total steps (P = 0.001). Greater number of steps (P &amp;lt; 0.01) and an increased standing time (P &amp;lt; 0.01) were observed in HIGH-RFI heifers. RFI × hour interaction was observed for lying and standing times (P = 0.006), where LOW-RFI heifers spent more time lying at 10:00 am (P &amp;lt; 0.01). Furthermore, LOW-RFI heifers had decreased number of steps per hour throughout the study (P = 0.03; 178 vs 191 ± 4.1). No effects were observed for ADG, BW, RF, and RiF (P &amp;gt; 0.24). In summary, selected activity behaviors differed between beef heifers with divergent residual feed intake while summer grazing. Further studies are needed to investigate the effects of continuous changes in weather conditions to better understand the environmental impacts on animal behavior while selecting for more efficient beef cattle.

PSVIII-A-4 Evaluation of Blood Parameters Associated to Environmental Stress in Grazing Beef Heifers with Divergent Residual Feed Intake

Abstract There is considerable interest in improved feed efficiency to enhance sustainability in beef production, but a lack of understanding exists on the interaction between residual feed intake (RFI) and environment while grazing. Increasing variation in environmental conditions has been documented in western Canada with summers becoming warmer. This study evaluated blood parameters and rumen temperature (RT) of grazing beef heifers with divergent residual feed intake (RFI) during summer (July to August) of 2022. Forty-four crossbred beef heifers (358 ± 4.78 kg body weight; approximately 14 months of age) previously tested for RFI in drylot and classified as more (n = 21; LOW-RFI = -0.9 ± 0.70) or less feed efficient (n = 23; HIGH-RFI = 1.3 ± 1.00) were grazed at 2.72 AUM/ha over 7 wk in Alberta, Canada. Rumen temperatures were automatically recorded throughout the study using the Smart Rumen Bolus by Moonsyst. Plasma was collected every 14 ± 1 d for 42 d to determine concentrations of blood urea nitrogen (BUN), non-esterified fatty acids (NEFA), insulin-like growth factor 1 (IGF-1), β-Hydroxybutyric acid (BHBA), leptin (LEP), free triiodothyronine (fT3), haptoglobin (HP), heat shock protein 70 (HSP70), and gamma-aminobutyric acid (GABA). Environmental conditions were assessed by calculating the Climate Comprehensive Index using temperature, wind speed, solar radiation, and humidity data from a weather station within 1 km of the grazed pastures. Daily weather conditions were considered to impose risk to cause mild, moderate, severe, and extreme stress for 8, 21, 8, and 1 days, respectively. Plasma and RT data were analyzed as a completely randomized design with repeated measures. An RFI × day interaction was observed for BUN (P = 0.018). LOW-RFI had greater (P = 0.02) BUN on d 42 compared with HIGH-RFI heifers (42.5 vs. 32.6 mg/dL, respectively), while GABA tended to be greater (P ≤ 0.09) for HIGH-RFI heifers on d 0 and 42. Free T3 concentrations were greater (P = 0.04; 8.54 vs. 7.78 pmol/L, respectively), whereas HP was less (P = 0.01) in LOW-RFI heifers. However, HP concentrations were below the threshold for inflammation throughout the study. There was also an effect of day (P &amp;lt; 0.01) for fT3, IGF-1, LEP, NEFA, HSP70, and BHBA. Leptin and HSP70 concentrations were greatest on d 14 and 28, whereas BHBA was the greatest (P &amp;lt; 0.01) and IGF-1 the least on d 42 (P &amp;lt; 0.01). An RFI × hour interaction was detected for RT (P = 0.0003), where HIGH-RFI heifers had greater RT throughout the day. In summary, weather conditions in western Canada changed blood parameters of replacement beef heifers during summer. Feed efficient heifers had decreased RT and greater plasma concentrations of fT3, which could be associated with metabolic homeostasis and regulation of thermogenesis.

PSV-10 Effects of Rumen-Bypass Protein Supplement on Growth Performance, Hepatic Mitochondrial Function and Immune Gene Expression of Beef Steers with Divergent Residual Feed Intake Phenotype

Abstract We examined the effects of rumen-bypass protein supplement on growth performance, hepatic mitochondrial Electron Transport Chain (ETC) activities, and mRNA expression of innate and adaptive immune genes of beef steers with divergent residual feed intake (RFI) phenotype. Thirty-nine crossbred beef steers (average BW = 492 ± 36 kg) were used in a generalized randomized block design with a 2 × 2 factorial arrangement of treatments for a 42-d experimental period. The factors evaluated were 1) RFI classification [low-RFI (-2.12kg/d) vs. high-RFI (2.02kg/d)], and 2) feed additive: rumen-bypass protein supplement (RCP; 227 g· steer-1· day-1) vs. Control diet (CON; 0 g/d), resulting in four treatments: Low-RFI-CON (n = 10), low-RFI-RCP (n = 9), high-RFI-CON (n = 10), and high-RFI-RCP (n = 10). The rumen-bypass protein supplement (84% CP) is a blend of hydrolyzed feather meal, porcine blood meal, and DL-methionine hydroxy analogue. The beef steers were stratified by BW and randomly assigned to treatments and housed in four pens equipped with two GrowSafe feed bunks each to measure individual DMI. Body weight was measured every 7 days. Liver tissue was sampled on d 42 from all animals using a liver biopsy needle for mRNA expression analysis of 84 immune genes and analysis of mitochondrial ETC activities of complexes I – V. No effects of supplemental feed additive or RFI × feed additive interactions were observed (P &amp;gt; 0.05) for ADG and DMI. Compared with high-RFI, low-RFI beef steers tended to have less DMI (13.6 vs 12.9 kg/d; P = 0.09) but ADG was similar for the two RFI groups. Feed additive × RFI interactions were observed (P ≤ 0.05) for mitochondrial activities of Complexes IV, V, and mRNA expressions of some immune genes. Supplemental RCP increased Complex IV (39.2 nmol/min/mg) activity and reduced that of Complex V (94.1 nmol· min-1· mg-1) in high-RFI beef steers whereas the activity of Complex IV (13.1 nmol· min-1· mg-1) was reduced and that of Complex V (120 nmol· min-1· mg-1) was increased in low-RFI beef steers. Supplemental RCP increased (P &amp;lt; 0.05) the mRNA expression of TLR2 [fold change (FC) = 1.17 vs 0.98], TLR3 (FC = 1.49 vs 0.97), NFKB1 (FC = 1.02 vs 0.90), and IL23A (FC = 1.35 vs 1.07) in high-RFI beef steers but the expression of these genes were not altered in low-RFI beef steers. In conclusion, RCP supplementation did not affect the growth performance and the observed effects on hepatic immune gene expression and activities of mitochondrial ETC complexes are dependent on the RFI phenotype of the beef steers. Further research should explore the mechanism responsible for the interactions between RCP supplementation and RFI status.

323 Rumen Fluid Amine/Phenol-Metabolome of Beef Steers with Divergent Residual Feed Intake Phenotype

Abstract The amine/phenol-metabolome of rumen fluid was analyzed to identify amino acid metabolism-related biomarkers associated with divergent residual feed intake (RFI) phenotype in beef cattle. Fourteen beef steers [most feed-efficient (HFE; RFI = −1.89 kg/d, n = 7) and least feed-efficient (LFE; RFI = +2.05 kg/d, n = 7)] were selected from a total of 56 crossbred growing beef steers (average BW = 261 ± 18.5 kg) after a 49-d feeding period in a dry lot equipped with two GrowSafe intake nodes. Rumen fluid samples were collected 4 h after feeding on d 56, 63, and 70 from the HFE and LFE beef steers. Metabolome analysis of the rumen fluid was performed using chemical isotope labeling/liquid chromatography-mass spectrometry to identify all metabolites containing amine/phenol chemical groups, which are mostly amino acid metabolites. A total of 493 metabolites were detected and identified in the rumen fluid. The partial least squares discriminant scores plot showed a slight separation between the two groups of steers, and a total of eight metabolites were found to be differentially abundant (FDR ≤ 0.05). Out of the eight differentially abundant metabolites, four metabolites (isomer 1 of cadaverine, baeocystin, 6-methyladenine, and N(6)-methyllysine) qualified as candidate biomarkers of divergent RFI phenotype based on area under the curve ≥ 0.70. The results of this study revealed that divergent RFI phenotype is associated with alteration in rumen amine/phenol-metabolome of beef steers.

403 Awardee Talk: Characterization of Rumen Microbiome and Immune Genes Expression of Crossbred Beef Steers with Divergent Residual Feed Intake Phenotypes

Abstract We investigated whole blood and hepatic mRNA expressions of immune genes and rumen microbiome of crossbred beef steers with divergent residual feed intake (RFI) phenotype to identify relevant biological processes underpinning feed efficiency in beef cattle. Low-RFI beef steers (n = 20; RFI = - 1.83 kg/d) and high-RFI beef steers (n = 20; RFI = + 2.12 kg/d) were selected from a group of 108 growing crossbred beef steers (average BW = 282 ± 30.4 kg) fed a high-forage total mixed ration after a 70-d performance testing period. At the end of the 70-d testing period, liver biopsies and blood samples were collected for total RNA extraction and cDNA synthesis. Rumen fluid samples were also collected for analysis of the rumen microbial community. The mRNA expression of 84 genes related to innate and adaptive immunity was analyzed using pathway-focused PCR-based arrays. Differentially expressed genes were determined using P-value ≤ 0.05 and fold change (FC) ≥ 1.5 (in whole blood) or ≥ 2.0 (in liver). Gene ontology analysis of the differentially expressed genes revealed that pathways related to pattern recognition receptor activity, positive regulation of phagocytosis, positive regulation of vitamin metabolic process, vascular endothelial growth factor production, positive regulation of epithelial tube formation and T-helper cell differentiation were significantly enriched (FDR &amp;lt; 0.05) in low-RFI steers. In the rumen, the relative abundance of PeH15, Arthrobacter, Moryella, Weissella and Muribaculaceae was enriched in low-RFI steers, while Methanobrevibacter, Bacteroidales_BS11_gut_group, Bacteroides and Clostridium_sensu_stricto_1 were reduced. Our study found that low-RFI beef steers exhibit increased mRNA expression of genes related to immune cell functions in whole blood and liver tissues, specifically those involved in pathogen recognition and phagocytosis regulation. Additionally, these low-RFI steers showed differences in relative abundance of some microbial taxa which may partially account for their improved feed efficiency compared with high-RFI steers.

PSII-27 Inflammation- and Immunity-Associated Gene Expression in the Liver and Whole Blood of Crossbred Beef Cattle with Divergent Residual Feed Intake Phenotype

Abstract We investigated the inflammation- and immunity-associated gene expression in the liver and whole blood of crossbred beef cattle with divergent residual feed intake phenotype to identify relevant immune-related biological processes underpinning feed efficiency in beef cattle. Low-RFI beef steers (n = 8; RFI = - 1.93 kg/d) and high-RFI beef steers (n = 8; RFI = + 2.01kg/d) were selected from a group of 56 growing crossbred beef steers (average BW = 261 ± 18.5 kg) fed a high-forage total mixed ration after a 49-d performance testing period. At the end of the 49-d testing period, liver biopsies and blood samples were collected for total RNA extraction and cDNA synthesis. The mRNA expression of 84 genes each related to innate and adaptive immunity was analyzed using pathway-focused PCR-based arrays. The mRNA expressions of genes with fold change ≥ (-) 2.0 and FDR ≤ 0.05 in the blood and liver were determined to be differentially expressed. Out of the 84 immune genes analyzed, the expression of 8 genes in the blood and 20 genes in the liver were upregulated in low-RFI, compared with high-RFI steers. Gene ontology analysis of all the differentially expressed genes in the blood and liver revealed that pathways related to pattern recognition receptor activity, detection of lipopolysaccharide, detection of external biotic stimulus, positive regulation of phagocytosis, positive regulation of vitamin metabolic process, vascular endothelial growth factor production, positive regulation of epithelial tube formation and T-helper cell differentiation were enriched (FDR &amp;lt; 0.05) in Low-RFI beef steers. These results suggest that low-RFI steers have a robust immune repertoire that is capable of prompt response to inflammatory stimuli. This prompt response to inflammation in the Low-RFI group may be characterized by greater protein turnover and increased epithelial cell differentiation, whereby an enhanced quantity of invariant natural killer T-cells and viability of natural killer cells could induce a quicker and more effective response to inflammatory stimuli and consequently contribute to more efficient partitioning of nutrients for growth in these animals.

Relationship between residual feed intake and digestive traits of fattening bulls fed grass silage- or maize silage-based diets

Several studies tried to identify digestive determinants of individual variation in feed efficiency between fattening bulls, because of their importance for breeding and management strategies. Most studies focused on single traits or single diet. Little is known about diet-dependent differences in digestive determinants and on their relative importance in distinguishing divergent residual feed intake (RFI) bulls. This research aimed (i) to identify digestive traits that differed between bulls diverging in RFI and fed a maize silage- or a grass silage-based diets; (ii) to highlight the relationships between RFI and digestive traits, and (iii) to explore the hierarchy among digestive traits in discriminating RFI divergent bulls. After an initial RFI test of 84 days on 100 Charolais growing bulls fed two different diets based on grass silage (GS), or maize silage (MS), the 32 most RFI divergent bulls were selected (eight efficient RFI− and eight inefficient RFI+ bulls per diet) and measured thereafter for total tract apparent digestibility and transit rate, enteric gas emissions (CH4 and H2), rumen pH, and feeding behaviour. Rumen particle size and visceral organ and reticulo-omasal orifice (ROO) sizes and rumen and ileum histology were measured at slaughter on the 32 selected extreme RFI bulls. Irrespective of the diet, efficient bulls (RFI−) had lower rumen size, CH4 yield (g/kg DM intake; tendency), lower number of cells in the ileal crypts, tended to have longer time of rumen pH below 5.8 and lower proportion of small size particles in rumen content than non-efficient bulls (RFI+). A long-term test for feed efficiency (197 d on average) was performed on the whole experimental period until slaughter for the 100 animals. The long-term RFI value was negatively related to time spent in activity other than ingestion, rumination, and resting, and positively related (tendency) to the duration of ingestion events, to rumen and abomasum size, irrespective of the diet. Diet-dependent effects were noted: with GS, efficient (RFI−) bulls showed a slower transit rate, whereas with MS, efficient (RFI−) bulls tended to have shorter resting events and a smaller ROO than inefficient bulls (RFI+). The transit rate and the ROO size tended to be positively related, while total tract apparent digestibility of nitrogen was negatively related to long-term RFI value, but only in GS. Rumen size appeared as the most discriminating digestive variable between RFI divergent bulls, but this result should be validated on a larger number of animals and diets.

Effect of breed and diet on the M. longissimus thoracis et lumborum transcriptome of steers divergent for residual feed intake

Improving cattle feed efficiency through selection of residual feed intake (RFI) is a widely accepted approach to sustainable beef production. A greater understanding of the molecular control of RFI in various breeds offered contrasting diets is necessary for the accurate identification of feed efficient animals and will underpin accelerated genetic improvement of the trait. The aim of this study was to determine genes and biological processes contributing to RFI across varying breed type and dietary sources in skeletal muscle tissue. Residual feed intake was calculated in Charolais and Holstein–Friesian steers across multiple dietary phases (phase-1: high concentrate (growing-phase); phase-2: zero-grazed grass (growing-phase); phase-3: high concentrate (finishing-phase). Steers divergent for RFI within each breed and dietary phase were selected for muscle biopsy collection, and muscle samples subsequently subjected to RNAseq analysis. No gene was consistently differentially expressed across the breed and diet types examined. However, pathway analysis revealed commonality across breeds and diets for biological processes including fatty acid metabolism, immune function, energy production and muscle growth. Overall, the lack of commonality of individual genes towards variation in RFI both within the current study and compared to the published literature, suggests other genomic features warrant further evaluation in relation to RFI.

45 Effects of Genomic Residual Feed Intake on Performance, Feed Efficiency and Greenhouse Gas Emissions in Holstein Heifers

Abstract The objective of this study was to examine the differences in performance, feed efficiency, and greenhouse gas emissions in Holstein heifers with divergent genomic residual feed intake (RFIg). Holstein heifers (n = 55; initial BW = 351 ± 64 kg) were classified as either low RFIg (n = 29) or high RFIg (n = 26) based on RFIg values determined from their genomic breeding values (Ecofeed index, STgenetics). Heifers were blocked by RFIg, stratified by BW and assigned to 1 of 2 pens, each equipped with 4 electronic feedbunks (GrowSafe Systems), with 1 pen equipped with a GreenFeed real-time gaseous-exchange measurement system (GEM; C-Lock). Heifers were fed a corn-silage based total mixed ration twice daily. Individual dry matter intake (DMI) was collected for 84 d and BW measured weekly. Phenotypic residual feed intake (RFIp) was calculated as the residual from the regression of DMI on average daily gain (ADG) and mid-test BW0.75. As only 1 of the 2 pens had a GEM system, during the 84-day study heifers were rotated between the two pens at 14 day intervals resulting in each group of heifers having three 14-day gaseous exchange measurement periods. A time series analysis of gaseous exchange measurements, with a repeated measure of measurement period, fixed effect of RFIg class and random effect of pen was conducted. A mixed model with RFIg class as fixed effect and pen as a random effect was used for analysis of the other response variables. There were no differences in initial or final BW and ADG for heifers with divergent RFIg; however, the low RFIg heifers consumed 7.3% less (P &amp;lt; 0.05) feed per day than their high RFIg counterparts. Consequently, low RFIg heifers exhibited a more favorable (P &amp;lt; 0.05) RFIp, with a RFIp of -0.188 and 0.211 kg/d for low and high RFIg heifers, respectively. There were no RFIg class by measurement period interactions (P &amp;gt; 0.10) for the greenhouse gas emissions measured. Low RFIg heifers had 7.7% less (P &amp;lt; 0.05) methane emissions (g/d) and 6.1% less (P &amp;lt; 0.05) carbon dioxide production (g/d) than their high RFIg counterparts. However, methane yield (g methane/kg DMI) was similar (P &amp;gt; 0.05) for low and high RFIg heifers. These results indicate that selection for low RFIg has the potential to identify cattle with favorable feed efficiency phenotypes. Additionally, selection based on RFIg provides the opportunity to produce cattle with fewer greenhouse gas emissions. Further research is warranted into selection based on RFIg through genomic indexes to improve feed efficiency and mitigate the environmental impact of cattle production.

Milk metabolomics analyses of lactating dairy cows with divergent residual feed intake reveals physiological underpinnings and novel biomarkers.

The opportunity to select for feed efficient cows has been limited by inability to cost-effectively record individual feed efficiency on an appropriate scale. This study investigated the differences in milk metabolite profiles between high- and low residual feed intake (RFI) categories and identified biomarkers of residual feed intake and models that can be used to predict residual feed intake in lactating Holsteins. Milk metabolomics analyses were undertaken at early, mid and late lactation stages and residual feed intake was calculated in 72 lactating dairy cows. Cows were ranked and grouped into high residual feed intake (RFI >0.5 SD above the mean, n = 20) and low residual feed intake (RFI <0.5 SD below the mean, n = 20). Milk metabolite profiles were compared between high residual feed intake (least efficient) and low residual feed intake (most efficient) groups. Results indicated that early lactation was predominantly characterized by significantly elevated levels of medium chain acyl carnitines and glycerophospholipids in high residual feed intake cows. Citrate cycle and glycerophospholipid metabolism were the associated pathways enriched with the significantly different metabolites in early lactation. At mid lactation short and medium chain acyl carnitines, glycerophospholipids and amino acids were the main metabolite groups differing according to residual feed intake category. Late lactation was mainly characterized by increased levels of amino acids in high residual feed intake cows. Amino acid metabolism and biosynthesis pathways were enriched for metabolites that differed between residual feed intake groups at the mid and late lactation stages. Receiver operating characteristic curve analysis identified candidate biomarkers: decanoylcarnitine (area under the curve: AUC = 0.81), dodecenoylcarnitine (AUC = 0.81) and phenylalanine (AUC = 0.85) at early, mid and late stages of lactation, respectively. Furthermore, panels of metabolites predicted residual feed intake with validation coefficient of determination (R 2) of 0.65, 0.37 and 0.60 at early, mid and late lactation stages, respectively. The study sheds light on lactation stage specific metabolic differences between high-residual feed intake and low-residual feed intake lactating dairy cows. Candidate biomarkers that distinguished divergent residual feed intake groups and panels of metabolites that predict individual residual feed intake phenotypes were identified. This result supports the potential of milk metabolites to select for more efficient cows given that traditional residual feed intake phenotyping is costly and difficult to conduct in commercial farms.

Rumen and Fecal Microbiota Characteristics of Qinchuan Cattle with Divergent Residual Feed Intake.

Residual feed intake (RFI) is one of the indicators of feed efficiency. To investigate the microbial characteristics and differences in the gastrointestinal tract of beef cattle with different RFI, a metagenome methodology was used to explore the characteristics of the rumen and fecal microbiota in 10 Qinchuan cattle (five in each of the extremely high and extremely low RFI groups). The results of taxonomic annotation revealed that Bacteroidetes and Firmicutes were the most dominant phyla in rumen and feces. Prevotella was identified as a potential biomarker in the rumen of the LRFI group by the LEfSe method, while Turicibacter and Prevotella might be potential biomarkers of the HRFI and LRFI group in feces, respectively. Functional annotation revealed that the microbiota in the rumen of the HRFI group had a greater ability to utilize dietary polysaccharides and dietary protein. Association analysis of rumen microbes (genus level) with host genes revealed that microbiota including Prevotella, Paraprevotella, Treponema, Oscillibacter, and Muribaculum, were significantly associated with differentially expressed genes regulating RFI. This study discovered variances in the microbial composition of rumen and feces of beef cattle with different RFIs, demonstrating that differences in microbes may play a critical role in regulating the bovine divergent RFI phenotype variations.

Rumen Fluid Amine/Phenol-Metabolome of Beef Steers with Divergent Residual Feed Intake Phenotype

The amine/phenol-metabolome of rumen fluid was analyzed to identify amino acid metabolism-related biomarkers associated with phenotypic selection for low or high residual feed intake (RFI) in beef cattle. Fourteen beef steers (most feed-efficient (HFE; RFI = −1.89 kg/d, n = 7) and least feed-efficient (LFE; RFI = +2.05 kg/d, n = 7)) were selected from a total of 56 crossbred growing beef steers (average BW = 261 ± 18.5 kg) after a 49-d feeding period in a dry lot equipped with two GrowSafe intake nodes. Rumen fluid samples were collected 4 h after feeding on d 56, 63, and 70 from the HFE and LFE beef steers. Metabolome analysis of the rumen fluid was performed using chemical isotope labeling/liquid chromatography-mass spectrometry to identify all metabolites containing amine/phenol chemical groups, which are mostly amino acid metabolites. A total of 493 metabolites were detected and identified in the rumen fluid. The partial least squares discriminant scores plot showed a slight separation between the two groups of steers, and a total of eight metabolites were found to be differentially abundant (FDR ≤ 0.05). Out of the eight differentially abundant metabolites, four metabolites (isomer 1 of cadaverine, baeocystin, 6-methyladenine, and N(6)-methyllysine) qualified as candidate biomarkers of divergent RFI phenotype based on area under the curve ≥ 0.70. The results of this study revealed that divergent RFI phenotype is associated with alteration in rumen amine/phenol-metabolome of beef steers.

Phenotypic variation in residual feed intake and relationship with body composition traits and methane emissions in growing wether lambs

Context Ruminant livestock industries are seeking to improve efficiency of feed use and reduce greenhouse gas emissions. Aims The research aimed to measure variation in feed intake and residual feed intake (RFI) in growing lambs and examine the inter-relationships of related traits and diet effects. Methods In Phase 1, 6-month-old Merino wethers (n = 113) were fed a base diet ad libitum for 60 days to measure dry matter intake (DMI), liveweight (LWT) and average daily gain (ADG). Whilst being fed the same base diet, measures of body composition (using computer tomography scanning) and methane emissions were collected. For Phase 2, lambs selected for low or high RFI in Phase 1 were randomly assigned to either a low or high diet and fed ad libitum for 30 days. They were assessed for intake, growth, body composition and CH4 emissions. Key results In Phase 1 there was significant variation in DMI, which was explained by these traits in order of significance (R2 additive): LWT (R2 = 63.9%), ADG (R2 = 70.4%) and fat gain (R2 = 75.7%). In Phase 2, high RFI lambs had higher metabolisable energy intake (MEI; P &lt; 0.05) compared to low RFI lambs. In lambs fed the high diet, intake (DMI and MEI P &lt; 0.001), LWT (P &lt; 0.05), ADG (P &lt; 0.001), fat and lean gain (P &lt; 0.001) were higher than in lambs fed the low diet. Daily methane emissions were highest (P &lt; 0.05) in high RFI lambs fed the high diet. There were no significant effects of RFI or diet on methane yield (MY; g methane/kg DM). Differences in RFI or RFI adjusted for fat gain did not persist to the end of the 30 day feeding period in Phase 2. Conclusions Lambs with low RFI had lower MEI for the same liveweight as well as lower fat and lean gain in the empty bodyweight. They also had lower daily methane emissions compared to those that had high RFI and ate more. Implications The opportunity to select sheep at a young age with lower RFI and lower MEI is of significant production and environmental importance.