Deep sea water (DSW) is a globally utilized source of renewable energy and other resources. To understand the characteristics of DSW resources in the South China Sea, in July 2022, the Guangzhou Marine Geological Survey (GMGS) investigated temperature, salinity, pH, dissolved oxygen (DO), inorganic salts (DIN, PO43−-P, and SiO3-Si), heavy metals (Hg, Pb, As, and Cd), trace elements (Cu, Zn, Fe, Mn, Ni, Se, and Mo), and other related indicators. The results of this investigation elucidate the horizontal and vertical changes in the physical and chemical properties of deep sea water in the Xisha Sea. The surface seawater quality in Xisha was found to be excellent and to meet first-class seawater survey standards. However, the concentrations of various nutrient salts in the surface layer were relatively low. As the seawater depth increased, different trace elements and heavy metals exhibited variations, and the concentrations of various nutrients also gradually increased.