Utilization Of Plant Biomass Research Articles

Biomass of invasive plants as a resource for the development of the bioeconomy

The global spread of invasive plants is an important environmental problem and a real threat to biological diversity, with significant impacts on agriculture, forestry, and human and animal health. Invasive plant eradication produces large amounts of plant biomass, which should be safely utilized. The study reviews possibilities for using biomass of invasive plant species in the bioeconomy to safely convert them to items of value. Invasive plant biomass can be used as fuel or for energy production applying either biochemical or thermochemical processing technologies. The biomass of invasive plants also can be used for energy production or isolation of biologically active components. Invasive plants contain many groups of substances providing their defense potential against predators; these substances participate in metabolic regulation processes and others. Amongst the substances of interest for bioeconomy are lipids, polyphenols, alkaloids, carbohydrates, plant fibers, and essential oils. In the development of invasive plant biomass utilization strategies, the bio-based value pyramid and the waste hierarchy should be considered. Scientific sound strategies of invasive plant management will limit their spread and provide economic benefits via their eradication.

Integrated Multi-Omics Reveals New Ruminal Microbial Features Associated with Peanut Vine Efficiency in Dairy Cattle.

The aim of this study was to improve the utilization of peanut vines as forage material for ruminants by investigating the degradation pattern of peanut vines in the dairy cow rumen. Samples of peanut vine incubated in cow rumens were collected at various time points. Bacterial diversity was investigated by scanning electron microscopy (SEM) and 16S rRNA gene sequencing. Carbohydrate-active enzymes (CAZymes) were analyzed by metagenomics. The peanut vines degraded rapidly from 2 to 24 h, before slowing from 24 to 72 h. SEM images confirmed dynamic peanut vine colonization. Firmicutes and Bacteroidetes were the two most dominant bacterial phyla throughout. Principal coordinates analysis indicated significant microbial composition changes at 6 and 24 h. This may be because, in the early stage, soluble carbohydrates that are easily degradable were degraded, while in the later stage, fibrous substances that are difficult to degrade were mainly degraded. Glycoside hydrolases (GHs) were the most abundant CAZymes, with peak relative abundance at 6 h (56.7 trans per million, TPM), and reducing at 24 (55.9 TPM) and 72 h (55.3 TPM). Spearman correlation analysis showed that Alistipes_sp._CAG:435, Alistipes_sp._CAG:514, Bacteroides_sp._CAG:1060, Bacteroides_sp._CAG:545, Bacteroides_sp._CAG:709, Bacteroides_sp._CAG:770, bacterium_F082, bacterium_F083, GH29, GH78, and GH92 were important for plant fiber degradation. These findings provide fundamental knowledge about forage degradation in the cow rumen, and will be important for the targeted improvement of ruminant plant biomass utilization efficiency.

Hydrothermal carbonization of invasive plant biomass as a tool for its safe utilization and production of artificial humic substances

Abstract Invasive plants may cause significant environmental risks by affecting biological diversity, ecosystem services, agriculture, and forestry. Safe utilization of invasive plant biomass by obtaining new outcome products useful for bioeconomics is a challenging but promising solution. Hydrothermal carbonization (HTC) presents a sustainable and cost-effective approach to transforming invasive plant biomass into new products while simultaneously supporting carbon capture aims. This study utilized invasive plants such as lupine [Lupinus polyphyllus Lindl.], Sosnowsky’s hogweed [Heracleum sosnowskyi Manden.], and Japanese knotweed [Polygonum cuspidatum Siebold & Zucc.] as biomass sources for HTC to produce artificial humic substances (AHS). The greatest impact on the yield of AHS (maximum gained yield 62%) has the duration of the HTC process (up to 6 h) and temperature of the treatment (from 160 up to 250 °C), as well as the catalyst used (an alkaline medium is preferable). During the HTC treatment, significant changes in the invasive plant biomass composition occur as indicated by the removal of labile components of organic matter. Obtained AHS are essentially similar to natural humic matter and have biostimulatory properties; thus, they can find application in agriculture and other areas of bioeconomics.

Evaluation of the Productivity and Potential Utilization of Artemisia dubia Plant Biomass for Energy Conversion.

Field studies with the large-stemmed plant Artemisia dubia (A. dubia) have been carried out at the Vėžaičiai Branch of LAMMC since 2018. According to three years of experimental results, annual dry matter (DM) yield varied from 7.94 to 10.14 t ha-1. Growing conditions, nitrogen application level, and harvesting time had statistically significant impacts on A. dubia productivity. The most important tasks of this article were to investigate and determine the factors influencing A. dubia plant biomass productivity and the evaluation of technological, power, and environmental parameters of plant biomass utilization for energy conversion and the production of high-quality solid biofuel pellets. For the experiments, six variants of A. dubia samples were used, which were grown in 2021. Plants were cut three times and two fertilization options were used: (1) no fertilization and (2) fertilization with 180 kg ha-1 of nitrogen fertilizer. These harvested plants were chopped, milled, and pressed into pellets. The physical-mechanical characteristics (moisture content, density, and strength) of the A. dubia pellets were investigated. During this study, it was found that the density in the dry mass (DM) of the pellets ranged from 1119.86 to 1192.44 kg m-3. The pellet moisture content ranged from 8.80 to 10.49%. After testing pellet strength, it was found that the pellets which were made from plant biomass PK-1-1 (first harvest without N fertilization) were the most resistant to compression, and they withstood 560.36 N of pressure. The dry fuel lower heating value (LHV) of the pellets was sufficiently high and was very close to that of the pine sawdust pellets; it varied from 17.46 ± 0.25 MJ kg-1 to 18.14 ± 0.28 MJ kg-1. The ash content of the burned pellets ranged from 3.62 ± 0.02% to 6.47 ± 0.09%. Emissions of harmful pollutants-CO2, CO, NOx, and unburnt hydrocarbons (CxHy)-did not exceed the maximum permissible levels. Summarizing the results for the investigated properties of the combustion and emissions of the A. dubia pellets, it can be concluded that this biofuel can be used for the production of pressed biofuel, and it is characterized by sufficiently high quality, efficient combustion, and permissible emissions to the environment.

Effects of Lignin-Diverted Reductant with Polyphenol Oxidases on Cellulose Degradation by Wild and Mutant Types of Lytic Polysaccharide Monooxygenase.

Establishing a multi-enzyme synergistic lignocellulosic biodegradation system using lytic polysaccharide monooxygenase (LPMO) and polyphenol oxidases is vital for efficiently utilizing plant biomass waste, ultimately benefiting the carbon cycle and promoting environmental protection. Single-residue mutations of LPMO can improve the efficiency of lignocellulosic biomass degradation. However, the activity of mutant-type LPMO in relation to lignin-diverted reducing agents has not been sufficiently explored. In this study, laccase and tyrosinase were initially investigated and their optimal conditions and impressive thermal stability were revealed, indicating their potential synergistic abilities with LPMO in lignocellulose biodegradation. When utilizing gallic acid as a reducing agent, the activities of LPMOs were increased by over 10%, which was particularly evident in mutant-type LPMOs after the addition of polyphenol oxidases. In particular, the combination of tyrosinase with either 4-hydroxy-3-methoxyphenylacetone or p-coumaric acid was shown to enhance the efficacy of LPMOs. Furthermore, the highest activity levels of wild-type LPMOs were observed with the addition of laccase and 3-methylcatechol. The similarities between wild and mutant LPMOs regarding their activities in lignin-diverted phenolic compounds and reducing agents are almost identical, suggesting that the single-residue mutation of LPMO does not have a detrimental effect on its performance. Above all, this study indicates that understanding the performance of both wild and mutant types of LPMOs in the presence of polyphenol oxidases and various reducing agents constitutes a key link in the industrialization of the multi-enzyme degradation of lignocellulose.

Decrypting solvent‐free microwave as a dual green extraction: studying simultaneous extraction of essential oil and phenolics from the same biomass – valorization and outperforming traditional approaches

AbstractBACKGROUNDThe current research work focuses on the sustainable utilization of plant biomass so that two separate classes of phytocompounds (volatile and non‐volatile principles) can be extracted from the same biomass simultaneously. The hydro‐diffusion and gravity variant of solvent‐free microwave‐based extraction (MHG‐SFME) was attempted for the extraction of Piper betle L. essential oil (PBEO).RESULTSThe threat of milky emulsion has been exemplified for the first time which is likely to occur when the biomass temperature exceeds a critical value (85 °C). A microwave power level of 255 W with 25 min of extraction time produced PBEO with eugenol content 123% more than that obtained with steam distillation (SD). The said optimal MHG‐SFME conditions returned PBEO with the highest phenolic (20.8 mg GAE g−1 of oil) and eugenol (657.57 μg g−1) contents. PBEO showed better thermal behavior when compared to the EO obtained from SD.CONCLUSIONThe proposed method was capable of retaining non‐volatile principles, as the retention of total phenolics in biomass after MHG‐SFME was found to be 95%, indicating reusability of the biomass for the extraction of non‐volatile principles. In contrast, the retention factor of phenolics content for SD was found to be 17.7% only. Real‐time evidence in the form of chemo‐microscopy and scanning electron microscopy was generated to understand the retention of phenolics and ultrastructural changes upon microwave exposure. Complete glandular rupture was evident in the biomass subjected to MHG‐SFME while the oil glands appeared squeezed for the biomass which underwent SD. Complete profiling of phenolics and flavonoid principles of the leftover biomass was carried out. © 2024 Society of Chemical Industry (SCI).

Phytoextraction Options.

Wastewaters often contain an array of economically valuable elements, including elements considered critical raw materials and elements for fertilizer production. Plant-based treatment approaches in constructed wetlands, open ponds, or hydroponic systems represent an eco-friendly and economical way to remove potentially toxic metal(loid)s from wastewater (phytoextraction). Concomitantly, the element-enriched biomass represents an important secondary raw material for bioenergy generation and the recovery of raw materials from the harvested plant biomass (phytomining). At present, phytoextraction in constructed wetlands is still considered a nascent technology that still requires more fundamental and applied research before it can be commercially applied. This chapter discusses the different roles of plants in constructed wetlands during the phytoextraction of economically valuable elements. It sheds light on the utilization of plant biomass in the recovery of raw materials from wastewater streams. Here, we consider phytoextraction of the commonly studied water pollutants (N, P, Zn, Cd, Pb, Cr) and expand this concept to a group of rather exotic metal(loid)s (Ge, REE, PGM) highlighting the role of phytoextraction in the face of climate change and finite resources of high-tech metals.

Heterologous Naringenin Production in the Filamentous Fungus Penicillium rubens.

Naringenin is a natural product with several reported bioactivities and is the key intermediate for the entire class of plant flavonoids. The translation of flavonoids into modern medicine as pure compounds is often hampered by their low abundance in nature and their difficult chemical synthesis. Here, we investigated the possibility to use the filamentous fungus Penicillium rubens as a host for flavonoid production. P. rubens is a well-characterized, highly engineered, traditional "workhorse" for the production of β-lactam antibiotics. We integrated two plant genes encoding enzymes in the naringenin biosynthesis pathway into the genome of the secondary metabolite-deficient P. rubens 4xKO strain. After optimization of the fermentation conditions, we obtained an excellent molar yield of naringenin from fed p-coumaric acid (88%) with a titer of 0.88 mM. Along with product accumulation over 36 h, however, we also observed rapid degradation of naringenin. Based on high-resolution mass spectrometry analysis, we propose a naringenin degradation pathway in P. rubens 4xKO, which is distinct from other flavonoid-converting pathways reported in fungi. Our work demonstrates that P. rubens is a promising host for recombinant flavonoid production, and it represents an interesting starting point for further investigation into the utilization of plant biomass by filamentous fungi.

Whole genome sequencing and the lignocellulose degradation potential of Bacillus subtilis RLI2019 isolated from the intestine of termites

BackgroundLignocellulosic biomass is the most abundant and renewable terrestrial raw material for conversion into bioproducts and biofuels. However, the low utilization efficiency of lignocellulose causes environmental pollution and resource waste, which limits the large-scale application of bioconversion. The degradation of lignocellulose by microorganisms is an efficient and cost-effective way to overcome the challenge of utilizing plant biomass resources. This work aimed to screen valuable cellulolytic bacteria, explore its molecular mechanism from genomic insights, and investigate the ability of the strain to biodegrade wheat straw.ResultsBacillus subtilis (B. subtilis) RLI2019 was isolated from the intestine of Reticulitermes labralis. The strain showed comprehensive enzyme activities related to lignocellulose degradation, which were estimated as 4.06, 1.97, 4.12, 0.74, and 17.61 U/mL for endoglucanase, β-glucosidase, PASC enzyme, filter paper enzyme, and xylanase, respectively. Whole genome sequencing was performed to better understand the genetic mechanism of cellulose degradation. The genome size of B. subtilis RLI2019 was 4,195,306 bp with an average GC content of 43.54%, and the sequence characteristics illustrated an extremely high probability (99.41%) as a probiotic. The genome contained 4,381 protein coding genes with an average GC content of 44.20%, of which 145 genes were classified into six carbohydrate-active enzyme (CAZyme) families and 57 subfamilies. Eight cellulose metabolism enzyme-related genes and nine hemicellulose metabolism enzyme-related genes were annotated by the CAZyme database. The starch and sucrose metabolic pathway (ko00500) was the most enriched with 46 genes in carbohydrate metabolism. B. subtilis RLI2019 was co-cultured with wheat straw for 7 days of fermentation, the contents of neutral detergent fiber, acid detergent fiber, hemicellulose, and lignin were significantly reduced by 5.8%, 10.3%, 1.0%, and 4.7%, respectively. Moreover, the wheat straw substrate exhibited 664.9 μg/mL of reducing sugars, 1.22 U/mL and 6.68 U/mL of endoglucanase and xylanase activities, respectively. Furthermore, the fiber structures were effectively disrupted, and the cellulose crystallinity was significantly reduced from 40.2% to 36.9%.ConclusionsThe complex diversity of CAZyme composition mainly contributed to the strong cellulolytic attribute of B. subtilis RLI2019. These findings suggest that B. subtilis RLI2019 has favorable potential for biodegradation applications, thus it can be regarded as a promising candidate bacterium for lignocellulosic biomass degradation.

Species-Level Taxonomic Characterization of Uncultured Core Gut Microbiota of Plateau Pika.

Rarely has the vast diversity of bacteria on Earth been profiled, particularly on inaccessible plateaus. These uncultured microbes, which are also known as "microbial dark matter," may play crucial roles in maintaining the ecosystem and are linked to human health, regarding pathogenicity and prebioticity. The plateau pika (Ochotona curzoniae) is a small burrowing steppe lagomorph that is endemic to the Qinghai-Tibetan Plateau and is a keystone species in the maintenance of ecological balance. We used a combination of full-length 16S rRNA amplicon sequencing, shotgun metagenomics, and metabolomics to elucidate the species-level community structure and the metabolic potential of the gut microbiota of the plateau pika. Using a full-length 16S rRNA metataxonomic approach, we clustered 618 (166 ± 35 per sample) operational phylogenetic units (OPUs) from 105 plateau pika samples and assigned them to 215 known species, 226 potentially new species, and 177 higher hierarchical taxa. Notably, 39 abundant OPUs (over 60% total relative abundance) are found in over 90% of the samples, thereby representing a "core microbiota." They are all classified as novel microbial lineages, from the class to the species level. Using metagenomic reads, we independently assembled and binned 109 high-quality, species-level genome bins (SGBs). Then, a precise taxonomic assignment was performed to clarify the phylogenetic consistency of the SGBs and the 16S rRNA amplicons. Thus, the majority of the core microbes possess their genomes. SGBs belonging to the genus Treponema, the families Muribaculaceae, Lachnospiraceae, and Oscillospiraceae, and the order Eubacteriales are abundant in the metagenomic samples. In addition, multiple CAZymes are detected in these SGBs, indicating their efficient utilization of plant biomass. As the most widely connected metabolite with the core microbiota, tryptophan may relate to host environmental adaptation. Our investigation allows for a greater comprehension of the composition and functional capacity of the gut microbiota of the plateau pika. IMPORTANCE The great majority of microbial species remain uncultured, severely limiting their taxonomic characterization and biological understanding. The plateau pika (Ochotona curzoniae) is a small burrowing steppe lagomorph that is endemic to the Qinghai-Tibetan Plateau and is considered to be the keystone species in the maintenance of ecological stability. We comprehensively investigated the gut microbiota of the plateau pika via a multiomics endeavor. Combining full-length 16S rRNA metataxonomics, shotgun metagenomics, and metabolomics, we elucidated the species-level taxonomic assignment of the core uncultured intestinal microbiota of the plateau pika and revealed their correlation to host nutritional metabolism and adaptation. Our findings provide insights into the microbial diversity and biological significance of alpine animals.

Differential carbon utilization enables co-existence of recently speciated Campylobacteraceae in the cow rumen epithelial microbiome

The activities of different microbes in the cow rumen have been shown to modulate the host’s ability to utilize plant biomass, while the host–rumen interface has received little attention. As datasets collected worldwide have pointed to Campylobacteraceae as particularly abundant members of the rumen epithelial microbiome, we targeted this group in a subset of seven cows with meta- and isolate genome analysis. We show that the dominant Campylobacteraceae lineage has recently speciated into two populations that were structured by genome-wide selective sweeps followed by population-specific gene import and recombination. These processes led to differences in gene expression and enzyme domain composition that correspond to the ability to utilize acetate, the main carbon source for the host, at the cost of inhibition by propionate. This trade-off in competitive ability further manifests itself in differential dynamics of the two populations in vivo. By exploring population-level adaptations that otherwise remain cryptic in culture-independent analyses, our results highlight how recent evolutionary dynamics can shape key functional roles in the rumen microbiome.

Simultaneous denitrification and iron-phosphorus precipitation driven by plant biomass coupled with iron scraps in subsurface flow constructed wetlands

This study investigated the interaction between plant biomass and iron scraps and their influence on nitrogen (including nitrate and ammonia) and phosphorus removal in the subsurface flow constructed wetland. The results showed that with the addition of 0.5 g L−1 of plant biomass and 5.0 g L−1 of iron scraps, the nitrate, total nitrogen and total phosphorus removal were simultaneously improved. During 35 days of continuous operation, the plant biomass played main effect on the enhanced denitrification, accounting for about 57%, while iron scraps enhanced the other 43% of nitrogen removal and most phosphorus removal through precipitation inside the wetlands. Iron scraps could benefit the degradation of cellulose into low molecular carbohydrates by 10%, and the biomass could promote the oxidation of iron and increase the total phosphorus removal by 15%. Plant biomass coupled with iron scraps also improved simultaneously the richness, diversity and evenness of microbial community and promoted the abundance of Nitrospira (17.37%) and Thiobacillus (8.46%) in wetlands. In practice, putting iron scraps as matrix and placing plant biomass in the influent region would be a better choice. This research would provide a new method for effective utilization of plant biomass and iron scraps and further treatment of low-polluted wastewater in the wetlands.

Ultra-fast and low-cost electroactive biochar production for electroactive-constructed wetland applications: A circular concept for plant biomass utilization

This study demonstrates two sustainable processes to produce electroactive biochars and their application in electroactive constructed wetlands (CWs) for providing a circular route for biomass utilization and technology up-gradation for wastewater treatment along with electricity generation. With the use of Canna indica biomass generated in CWs operation, the current study produced two different biochars that differ in their physico-(electro)chemical properties related to the preparation method used. This study used plasma based processing to produce ultrafast biochar (PB) within a few minutes resulting in more crystalline biochar with high electrical conductivity compared to the amorphous biochar material produced by using the drum kiln processed biochar (KB) method. These biochars were used in developing electroactive constructed wetlands coupled with microbial fuel cells (CW-MFC) and were operated in batch mode together with commercial granular graphite (GG) substrate-based CW-MFC as control. PB was developed from high-temperature plasma processing in 6.0 min, whereas KB was prepared in bulk amount from semi-controlled combustion process in kiln method and took 3–4 days before final biochar preparation. Electrical conductivity (EC) of the biochar and GG material were found to be in the order of PB > GG > KB, indicating PB as a highly conductive material that assisted in microbial electron transfer. Accordingly, the highest current and power densities of 628 mA m-3 and 126 mW m-3, respectively, were also achieved with PB. The COD removal of 72.42 ± 2.61 %,72.32 ± 2.98 % and 59.91 ± 3.21 % was found in CW-MFC-GG, CW-MFC-KB and CW-MFC-PB microcosms, respectively.

Phosphorus Adsorption Characteristics of Different Biochar Types and Its Influencing Factors

In order to understand the resource utilization of plant biomass, five types of biomass materials were used to produce biochar to treat wastewater containing phosphorus. The phosphorus adsorption capacity of five materials was preliminarily compared through laboratory experiments, and two materials with strong phosphorus adsorption capacity were screened out. The physicochemical characteristics of the selected biochar were analyzed using scanning electron microscopy and a BET specific surface area analyzer, and the effects of different pH values on phosphorus adsorption of the biochar were investigated. Furthermore, the phosphorus adsorption characteristics of the selected biochar were analyzed via isothermal adsorption and adsorption kinetics models. The results showed that among the five biochar materials, only rice straw and corn straw biochar had the ability to adsorb phosphorus. The Langmuir isothermal adsorption curve showed that the adsorption capacity of rice straw biochar for phosphorus in wastewater was stronger than that of corn straw biochar, and the theoretical maximum adsorption capacity was as follows:rice straw biochar (9.78 mg·g-1)>corn straw biochar (0.39 mg·g-1). The specific surface area (148.30 m2·g-1) and total pore volume (0.11 cm3·g-1) of rice straw biochar were much higher than those of corn straw biochar (8.26 m2·g-1 and 0.03 cm3·g-1, respectively), and the contents of Mg, Ca, Fe, and Al were higher in rice straw biochar. The best pH for phosphorus adsorption of rice straw biochar and corn straw biochar was acidic. In different pH ranges (3.0-11.0), the phosphorus adsorption capacity of rice straw and corn straw biochar decreased with the increase in pH. These results indicated that rice straw biochar has strong phosphorus adsorption capacity and has a better application prospect in wastewater treatment.

Histone acetyltransferase GCN5-mediated lysine acetylation modulates salt stress aadaption of Trichoderma.

Trichoderma viride has a wide range of applications in plant growth promotion, biological control, cellulase production, and biomass utilization. Salinity is a major limitation to Trichoderma strains in the natural environment and fermentation environment, and to improve the adaptability of Trichoderma to salt stress is of great significance to its applications in industry and agriculture. Histone acetylation plays important roles in the regulation of physiological and biochemical processes including various stress responses. GCN5 is the most representative histone acetylase, which plays vital roles in chromatin remodeling of promoters to facilitate the transcription activation. In this paper, we identified a GCN5-encoding gene TvGCN5 in T. viride Tv-1511, and characterized the function and regulating mechanism of TvGCN5-mediated acetylation of histone H3 in the salt adoption of Tv-1511, by constructions of the deletion mutants (Tv-1511-△GCN5) and overexpression mutants (Tv-1511-GCN5-OE) of TvGCN5. Results showed that compared with wild-type Tv-1511, the over-expression of TvGCN5 resulted in the longer mycelia diameter and more biomass under salt stress. Furthermore, Tv-1511-△GCN5 strains obtained the improved sodium (Na+) compartmentation and antioxidant capacity by upregulating the transcriptional levels of genes encoding PM H+-ATPase, vacuolar H+-ATPase, and antioxidant enzymes. Notably, the changes in the transcriptional expressions of these genes are tightly modulated by the TvGCN5-mediated acetylated level of histone H3 in their promoter regions. In all, these results reveal that TvGCN5 plays an important role in stress tolerance of T. viride Tv-1511, and provides potential insight to facilitate the application of epigenetic modulation in the expanding utilization of Trichoderma. KEY POINTS: • Overexpresison of TvGCN5 improves the adoption of T. viride Tv-1511 to salt stress by increasing acetylation level of histone H3 on the promoter regions of sodium-transport and antioxidant-related genes, at H3K9ac, H3K14ac, H3K23ac, and H3K27ac. • Overexprsison of TvGCN5 enhances the ion transport and compartmentation capacity by upregulating the expressions and activities of PM and vacuolar H+-ATPase to tolerate salt stress. • Overexprsison of TvGCN5 promotes the antioxidant capacity by increasing the expressions and activities of antioxidant enzymes in response to salt stress.

Ferulic Acid From Plant Biomass: A Phytochemical With Promising Antiviral Properties.

Plant biomass is a magnificent renewable resource for phytochemicals that carry bioactive properties. Ferulic acid (FA) is a hydroxycinnamic acid that is found widespread in plant cell walls, mainly esterified to polysaccharides. It is well known of its strong antioxidant activity, together with numerous properties, such as antimicrobial, anti-inflammatory and neuroprotective effects. This review article provides insights into the potential for valorization of FA as a potent antiviral agent. Its pharmacokinetic properties (absorption, metabolism, distribution and excretion) and the proposed mechanisms that are purported to provide antiviral activity are presented. Novel strategies on extraction and derivatization routes, for enhancing even further the antiviral activity of FA and potentially favor its metabolism, distribution and residence time in the human body, are discussed. These routes may lead to novel high-added value biorefinery pathways to utilize plant biomass toward the production of nutraceuticals as functional foods with attractive bioactive properties, such as enhancing immunity toward viral infections.

Overexpression of pPLAIIIγ in Arabidopsis Reduced Xylem Lignification of Stem by Regulating Peroxidases.

Patatin-related phospholipases A (pPLAs) are a group of plant-specific acyl lipid hydrolases that share less homology with phospholipases than that observed in other organisms. Out of the three known subfamilies (pPLAI, pPLAII, and pPLAIII), the pPLAIII member of genes is particularly known for modifying the cell wall structure, resulting in less lignin content. Overexpression of pPLAIIIα and ginseng-derived PgpPLAIIIβ in Arabidopsis and hybrid poplar was reported to reduce the lignin content. Lignin is a complex racemic phenolic heteropolymer that forms the key structural material supporting most of the tissues in plants and plays an important role in the adaptive strategies of vascular plants. However, lignin exerts a negative impact on the utilization of plant biomass in the paper and pulp industry, forage digestibility, textile industry, and production of biofuel. Therefore, the overexpression of pPLAIIIγ in Arabidopsis was analyzed in this study. This overexpression led to the formation of dwarf plants with altered anisotropic growth and reduced lignification of the stem. Transcript levels of lignin biosynthesis-related genes, as well as lignin-specific transcription factors, decreased. Peroxidase-mediated oxidation of monolignols occurs in the final stage of lignin polymerization. Two secondary cell wall-specific peroxidases were downregulated following lowered H2O2 levels, which suggests a functional role of peroxidase in the reduction of lignification by pPLAIIIγ when overexpressed in Arabidopsis.

Efficient utilization of Iris pseudacorus biomass for nitrogen removal in constructed wetlands: Combining alkali treatment

Aquatic plant biomass like Iris pseudacorus can be used as electron donor to improve denitrification performance in subsurface constructed wetlands. However, the phenomenon that the nitrogen removal rate declined in the terminal stage restricted the utilization of litters. In terms of this problem, this study investigated the performance of the used biomass through alkali treatment on nitrogen removal and analyzed the effect of alkali treatment on the component and structure of biomass and microbial community. The results showed that the alkali-treated biomass could further enhance the nitrogen removal by nearly 15% compared with used ones. The significant damage of cell walls and compact fibers containing cellulose and lignin through alkali treatment mainly resulted in the improvement of carbon release and nitrogen removal. With the addition of alkali-treated biomass, the richness index of microbes was higher compared with other biomass materials. Furthermore, the abundance of denitrification related genera increased and the abundance of genera for nitrification was maintained. Based on these finds, a mode of a more efficient Iris pseudacorus self-consumed subsurface flow constructed wetlands was designed. In this mode, the effluent total nitrogen could be stabilized below 5 mg L−1 for nine months and the weight of litters could be further cut down by 75%. These findings would contribute to efficient utilization of plant biomass for nitrogen removal enhancement and final residue reduction in the wetlands.

Consolidated bioprocessing for bioethanol production by metabolically engineered Bacillus subtilis strains

Bioethanol produced by fermentative microorganisms is regarded as an alternative to fossil fuel. Bioethanol to be used as a viable energy source must be produced cost-effectively by removing expense-intensive steps such as the enzymatic hydrolysis of substrate. Consolidated bioprocessing (CBP) is believed to be a practical solution combining saccharification and fermentation in a single step catalyzed by a microorganism. Bacillus subtills with innate ability to grow on a diversity of carbohydrates seems promising for affordable CBP bioethanol production using renewable plant biomass and wastes. In this study, the genes encoding alcohol dehydrogenase from Z. mobilis (adhZ) and S. cerevisiae (adhS) were each used with Z. mobilis pyruvate decarboxylase gene (pdcZ) to create ethanologenic operons in a lactate-deficient (Δldh) B. subtilis resulting in NZ and NZS strains, respectively. The S. cerevisiae adhS caused significantly more ethanol production by NZS and therefore was used to make two other operons including one with double copies of both pdcZ and adhS and the other with a single pdcZ but double adhS genes expressed in N(ZS)2 and NZS2 strains, respectively. In addition, two fusion genes were constructed with pdcZ and adhS in alternate orientations and used for ethanol production by the harboring strains namely NZ:S and NS:Z, respectively. While the increase of gene dosage was not associated with elevated carbon flow for ethanol production, the fusion gene adhS:pdcZ resulted in a more than two times increase of productivity by strain NS:Z as compared with NZS during 48 h fermentation. The CBP ethanol production by NZS and NS:Z using potatoes resulted in 16.3 g/L and 21.5 g/L ethanol during 96 h fermentation, respectively. For the first time in this study, B. subtilis was successfully used for CBP ethanol production with S. cerevisiae alcohol dehydrogenase. The results of the study provide insights on the potentials of B. subtilis for affordable bioethanol production from inexpensive plant biomass and wastes. However, the potentials need to be improved by metabolic and process engineering for higher yields of ethanol production and plant biomass utilization.

Systems identification and characterization of \u03b2-glucuronosyltransferase genes involved in arabinogalactan-protein biosynthesis in plant genomes

Utilizing plant biomass for bioethanol production requires an understanding of the molecular mechanisms involved in plant cell wall assembly. Arabinogalactan-proteins (AGPs) are glycoproteins that interact with other cell wall polymers to influence plant growth and developmental processes. Glucuronic acid, which is transferred to the AGP glycan by β-glucuronosyltransferases (GLCATs), is the only acidic sugar in AGPs with the ability to bind calcium. We carried out a comprehensive genome-wide analysis of a putative GLCAT gene family involved in AGP biosynthesis by examining its sequence diversity, genetic architecture, phylogenetic and motif characteristics, selection pressure and gene expression in plants. We report the identification of 161 putative GLCAT genes distributed across 14 plant genomes and a widely conserved GLCAT catalytic domain. We discovered a phylogenetic clade shared between bryophytes and higher land plants of monocot grass and dicot lineages and identified positively selected sites that do not result in functional divergence of GLCATs. RNA-seq and microarray data analyses of the putative GLCAT genes revealed gene expression signatures that likely influence the assembly of plant cell wall polymers which is critical to the overall growth and development of edible and bioenergy crops.