Utilization Of Dissolved Organic Matter Research Articles

Insights into relationship between microbial community-induced polycyclic aromatic hydrocarbons degradation and soluble organic matter transformation during vermiculite-amended sewage sludge composting

Vermiculite is a natural clay mineral with unique properties that are widely used in plant cultivation, soil remediation, and solid waste management. This study investigated the relationship between microbial community-induced polycyclic aromatic hydrocarbons (PAHs) degradation and dissolved organic matter (DOM) transformation during vermiculite-amended composting of sewage sludge. Four treatments with varying vermiculite percent compositions, 0%, 1%, 5%, and 10%, mixed with initial mix waste, were designed and then composted for 33 days. The results showed that the addition of 1% vermiculite caused the highest losses of 82.19%, 52.98%, and 69.00% for LMW-PAHs (2-3 rings), HMW-PAHs (4-6 rings), and total PAHs respectively compared to other treatments. Spectral and community analyses revealed that 1% vermiculite enhanced the PAHs losses by functional networking of key genera and promoting the aromatization and humification of DOM to format the micelles with PAHs. The transformation and utilization of DOM driven by key genera Acinetobacter, Ochrobactrum, Pseudoxanthomonas, and Bacillus were the important impact factors for the losses of PAHs. Finally, this study provides new insights and a guide for applying vermiculite to sludge composting for PAHs removal.

Calcium regulates the interactions between dissolved organic matter and planktonic bacteria in Erhai Lake, Yunnan Province, China

In recent years, the global carbon cycle has garnered significant research attention. However, details of the intricate relationship between planktonic bacteria, hydrochemistry, and dissolved organic matter (DOM) in inland waters remain unclear, especially their effects on lake carbon sequestration. In this study, we analyzed 16S rRNA, chromophoric dissolved organic matter (CDOM), and inorganic nutrients in Erhai Lake, Yunnan Province, China. The results revealed that allochthonous DOM (C3) significantly regulated the microbial community, and that autochthonous DOM, generated via microbial mineralization (C2), was not preferred as a food source by lake bacteria, and neither was allochthonous DOM after microbial mineralization (C4). Specifically, the correlation between the fluorescence index and functional genes (FAPRPTAX) showed that the degree of utilization of DOM was a critical factor in regulating planktonic bacteria associated with the carbon cycle. Further examination of the correlation between environmental factors and planktonic bacteria revealed that Ca2+ had a regulatory influence on the community structure of planktonic bacteria, particularly those linked to the carbon cycle. Consequently, the utilization strategy of DOM by planktonic bacteria was also determined by elevated Ca2+ levels. This in turn influenced the development of specific recalcitrant autochthonous DOM within the high Ca2+ environment of Erhai Lake. These findings are significant for the exploration of the stability of DOM within karst aquatic ecosystems, offering a new perspective for the investigation of terrestrial carbon sinks.

Temperature enhances the functional diversity of dissolved organic matter utilization by coastal marine bacteria.

Although bulk bacterial metabolism in response to temperature has been determined for different oceanic regions, the impact of temperature on the functional diversity of dissolved organic matter (DOM) utilization has been largely unexplored. Here, we hypothesized that besides modifying the rates of carbon utilization, temperature can also alter the diversity of substrates utilized. The patterns of utilization of 31 model DOM compounds (as represented in Biolog EcoPlate™) by bacterioplankton were assessed using inocula from surface waters of the southern Bay of Biscay continental shelf over 1 year. Bacteria utilized more polymers and carbohydrates in late spring and summer than in winter, likely reflecting changes in substrate availability linked to the release and accumulation of DOM in phytoplankton post-bloom conditions. Seawater temperature correlated positively with the number of substrates utilized (i.e. functional richness) and this relationship was maintained in monthly experimental incubations spanning 3°C below and above in situ values. The enhancement of functional richness with experimental warming displayed a unimodal response to ambient temperature, peaking at 16°C. This temperature acted as a threshold separating nutrient-sufficient from nutrient-deficient conditions at the study site, suggesting that trophic conditions will be critical in the response of microbial DOM utilization to future warming.

Heterogeneous viral contribution to dissolved organic matter processing in a long-term macrocosm experiment.

Viruses saturate environments throughout the world and play key roles in microbial food webs, yet how viral activities affect dissolved organic matter (DOM) processing in natural environments remains elusive. We established a large-scale long-term macrocosm experiment to explore viral dynamics and their potential impacts on microbial mortality and DOM quantity and quality in starved and stratified ecosystems. High viral infection dynamics and the virus-induced cell lysis (6.23-64.68% d-1) was found in the starved seawater macrocosm, which contributed to a significant transformation of microbial biomass into DOM (0.72-5.32μgL-1d-1). In the stratified macrocosm, a substantial amount of viral lysate DOM (2.43-17.87μgL-1d-1) was released into the upper riverine water, and viral lysis and DOM release (0.35-5.75μgL-1d-1) were reduced in the mixed water layer between riverine water and seawater. Viral lysis was stimulated at the bottom of stratified macrocosm, potentially fueled by the sinking of particulate organic carbon. Significant positive and negative associations between lytic viral production and different fluorescent DOM components were found in the starved and stratified macrocosm, indicating the potentially complex viral impacts on the production and utilization of DOM. Results also revealed the significant viral contribution to pools of both relatively higher molecular weight labile DOM and lower molecular weight recalcitrant DOM. Our study suggests that viruses have heterogeneous impact on the cycling and fate of DOM in aquatic environments.

Molecular weight driving bioavailability and intrinsic degradation mechanisms of dissolved organic phosphorus in lake sediment

The sediment dissolved organic phosphorus (DOP) for the “internal phosphorus (P) loading” has raised intensive concern, but its bioavailability and intrinsic degradation mechanism have not been fully elucidated. In this work, multi-techniques were combined to construct the response of sediments DOP's bioavailability to molecular weight (MW) based on ten lakes of China, thereby elucidating the intrinsic degradation mechanism of sediment DOP. A high percentage (74.5% on average) and significantly positive correlations with respect to different MWs were observed, highlighting the importance of DOP to dissolved P in sediments. DOP is mainly composed of a low MW (LMW) portion (63.8%) and the substances are primarily derived from microbial sources. Bioavailable DOP species were closely related to MW, with labile monoester P and diester P decreased with decreasing MW. Analysis of environmental processes showed that microbial utilization capacity and the characteristics of dissolved organic matter (DOM) with different MWs were the dominant drivers in determining the bioavailability of DOP. That is, microorganisms exhibit high DOM utilization capacity in LMW portion, promoting the degradation and transformation of bioavailable DOP species. Furthermore, the increased humic and fulvic-like substances by microbial degradation might in turn inhibit the enzymatic hydrolysis of LMW-DOP. This pattern explains why the contents of LMW-DOP are very high, but it contains less bioavailable DOP. By studying the bioavailability of sediment DOPs with different MWs, it is found that, under natural conditions, labile monoester and diester P in LMW-DOP have a high tendency to degrade than those in HMW-DOP. The results further show that, microbial utilization and DOM characteristics, as well as their linkage with DOP's bioavailability and degradability, have important implications for assessing DOP's degradation potential. The insights from this study might shed light on more effective strategies for mitigating the risks of "internal P loading".

DNA-stable isotope probing (DNA-SIP) identifies marine sponge-associated bacteria actively utilizing dissolved organic matter (DOM).

SummarySponges possess exceptionally diverse associated microbial communities and play a major role in (re)cycling of dissolved organic matter (DOM) in marine ecosystems. Linking sponge‐associated community structure with DOM utilization is essential to understand host–microbe interactions in the uptake, processing, and exchange of resources. We coupled, for the first time, DNA‐stable isotope probing (DNA‐SIP) with 16S rRNA amplicon sequencing in a sponge holobiont to identify which symbiotic bacterial taxa are metabolically active in DOM uptake. Parallel incubation experiments with the sponge Plakortis angulospiculatus were amended with equimolar quantities of unlabelled (12C) and labelled (13C) DOM. Seven bacterial amplicon sequence variants (ASVs), belonging to the phyla PAUC34f, Proteobacteria, Poribacteria, Nitrospirae, and Chloroflexi, were identified as the first active consumers of DOM. Our results support the predictions that PAUC34f, Poribacteria, and Chloroflexi are capable of organic matter degradation through heterotrophic carbon metabolism, while Nitrospirae may have a potential mixotrophic metabolism. We present a new analytical application of DNA‐SIP to detect substrate incorporation into a marine holobiont with a complex associated bacterial community and provide new experimental evidence that links the identity of diverse sponge‐associated bacteria to the consumption of DOM.

Terrestrial Dissolved Organic Matter Mobilized From Eroding Permafrost Controls Microbial Community Composition and Growth in Arctic Coastal Zones

Climate warming is accelerating erosion along permafrost-dominated Arctic coasts. This results in the additional supply of organic matter (OM) and nutrients into the coastal zone. In this study we investigate the impact of coastal erosion on the marine microbial community composition and growth rates in the coastal Beaufort Sea. Dissolved organic matter (DOM) derived from three representative glacial deposit types (fluvial, lacustrine, and moraine) along the Yukon coastal plain, Canada, were used as substrate to cultivate marine bacteria using a chemostat setup. Our results show that DOM composition (inferred from UV-Visible spectroscopy) and biodegradability (inferred from DOC concentration, bacterial production and respiration) significantly differ between the three glacial deposit types. DOM derived from fluvial and moraine types show clear terrestrial characteristics with low aromaticity (Sr: 0.63 ± 0.02 and SUVA254: 1.65 ± 0.06 L mg C−1 m−1 & Sr: 0.68 ± 0.01 and SUVA254: 1.17 ± 0.06 L mg C−1 m−1, respectively) compared to the lacustrine soil type (Sr: 0.71 ± 0.02 and SUVA254: 2.15 ± 0.05 L mg C−1 m−1). The difference in composition of DOM leads to the development of three different microbial communities. Whereas Alphaproteobacteria dominate in fluvial and lacustrine deposit types (67 and 87% relative abundance, respectively), Gammaproteobacteria is the most abundant class for moraine deposit type (88% relative abundance). Bacterial growth efficiency (BGE) is 66% for DOM from moraine deposit type, while 13 and 28% for DOM from fluvial and lacustrine deposit types, respectively. The three microbial communities therefore differ strongly in their net effect on DOM utilization depending on the eroded landscape type. The high BGE value for moraine-derived DOM is probably caused by a larger proportion of labile colorless DOM. These results indicate that the substrate controls marine microbial community composition and activities in coastal waters. This suggests that biogeochemical changes in the Arctic coastal zone will depend on the DOM character of adjacent deposit types, which determine the speed and extent of DOM mineralization and thereby carbon channeling into the microbial food web. We conclude that marine microbes strongly respond to the input of terrestrial DOM released by coastal erosion and that the landscape type differently influence marine microbes.

Effect of potassium on nitrate removal from groundwater in agricultural waste-based heterotrophic denitrification system

Heterotrophic denitrification based on solid carbon sources has been widely investigated for nitrogen removal in recent years. In this study, the response of the heterotrophic denitrification process under different K+ concentrations was clarified. Additionally, the denitrification enhancement mechanism was revealed and resource utilization of agricultural waste was achieved. A series of batch tests were conducted to study the effect of different K+ concentrations on the denitrification performance, dissolved organic matter (DOM) dissolution and microbial community structure. Results demonstrate that the threshold of K+ concentration for the NO3−-N and NO2−-N reduction rates were 229.78 ± 25.80 and 159.10 ± 24.60 mg-K/L, respectively. Excitation-emission matrix (EEM) analysis identified the main DOM components associated with tyrosine-like, tryptophan-like and humic-like substances, as well as illustrated the evolutionary behavior and utilization of DOM. High throughput 16S rRNA gene sequencing indicates that a K+ concentration of 229.78 ± 25.80 mg-K/L exhibited the highest diversity of functional species associated with fermentation and denitrification. The genera Pseudomonas and Thiobacillus were the unique denitrifiers at this K+ concentration. The correlation of K+ concentration, DOM dissolution of different regions and microorganism structure were analyzed using correlation matrix and PCA, and the appropriate K+ concentration of different functional microorganisms survival was optimized by this analysis method.

Diapycnal dissolved organic matter supply into the upper Peruvian oxycline

Abstract. The eastern tropical South Pacific (ETSP) hosts the Peruvian upwelling system, which represents one of the most productive areas in the world ocean. High primary production followed by rapid heterotrophic utilization of organic matter supports the formation of one of the most intense oxygen minimum zones (OMZs) in the world ocean, where dissolved oxygen (O2) concentrations reach less than 1 µmol kg−1. The high productivity leads to an accumulation of dissolved organic matter (DOM) in the surface layers that may serve as a substrate for heterotrophic respiration. However, the importance of DOM utilization for O2 respiration in the Peruvian upwelling system in general and for shaping the upper oxycline in particular remains unclear so far. This study reports the first estimates of diapycnal fluxes and supply of O2, dissolved organic carbon (DOC), dissolved organic nitrogen, dissolved hydrolysable amino acids (DHAA) and dissolved combined carbohydrates (DCCHO) for the ETSP off Peru. Diapycnal flux and supply estimates were obtained by combining measured vertical diffusivities and solute concentration gradients. They were analysed together with the molecular composition of DCCHO and DHAA to infer the transport of labile DOM into the upper OMZ and the potential role of DOM utilization for the attenuation of the diapycnal O2 flux that ventilates the OMZ. The observed diapycnal O2 flux (50 mmol O2 m−2 d−1 at maximum) was limited to the upper 80 m of the water column; the O2 supply of ∼1 µmol kg−1 d−1 was comparable to previously published O2 consumption rates for the North and South Pacific OMZs. The diapycnal DOM flux (31 mmol C m−2 d−1 at maximum) was limited to ∼30 m water depth, suggesting that the labile DOM is extensively consumed within the upper part of the shallow oxycline off Peru. The analyses of DCCHO and DHAA composition support this finding, suggesting that DOM undergoes comprehensive remineralization within the upper part of the oxycline, as the DOM within the core of the OMZ was found to be largely altered. Estimated by a simple equation for carbon combustion, aerobic respiration of DCCHO and DHAA, supplied by diapycnal mixing (0.46 µmol kg−1 d−1 at maximum), could account for up to 38 % of the diapycnal O2 supply in the upper oxycline, which suggests that DOM utilization plays a significant role for shaping the upper oxycline in the ETSP.

Organic matter from Arctic sea-ice loss alters bacterial community structure and function

Continuing losses of multi-year sea ice (MYI) across the Arctic are causing first-year sea ice (FYI) to dominate the Arctic ice pack. Melting FYI provides a strong seasonal pulse of dissolved organic matter (DOM) into surface waters; however, the biological impact of this DOM input is unknown. Here we show that DOM additions cause important and contrasting changes in under-ice bacterioplankton abundance, production and species composition. Utilization of DOM was influenced by molecular size, with 10–100 kDa and >100 kDa DOM fractions promoting rapid growth of particular taxa, while uptake of sulfur and nitrogen-rich low molecular weight organic compounds shifted bacterial community composition. These results demonstrate the ecological impacts of DOM released from melting FYI, with wide-ranging consequences for the cycling of organic matter across regions of the Arctic Ocean transitioning from multi-year to seasonal sea ice as the climate continues to warm. Arctic sea-ice melt causes a release of dissolved organic material (DOM) into the surface waters. The increased dominance of first-year ice and DOM release is impacting under-ice bacterial communities.

Dissolved inorganic nitrogen fluxes from common Florida Bay (U.S.A.) sponges

AbstractSponge biomass represents the largest heterotrophic component of benthic biota in the Florida Bay ecosystem. These organisms can significantly alter the water quality of their surrounding environment through biogeochemical transformations of nutrient elements resulting from their dynamic pumping, water filtration, and respiration processes. Ammonium (NH4+) and nitrate plus nitrite (NO3− + NO2−; NO x−) fluxes were obtained for 11 ecologically important species at three sites within Florida Bay, Florida (U.S.A.) utilizing chamber incubations on undisturbed individual sponges. Significant dissolved inorganic nitrogen (DIN) effluxes ranging between 9.0 ± 2.2 μmol N h−1 Lsponge−1 and 141 ± 26 μmol N h−1 Lsponge−1 were observed for eight of the 11 tested sponges; specifically, from six of eight tested high‐microbial abundance (HMA) sponges, and from two of three tested low‐microbial abundance (LMA) sponges. The abundant HMA species Chondrilla nucula showed the highest, volume‐normalized rate of DIN release. These fluxes represent a continuation of the previously observed dichotomy in the chemical speciation of DIN in exhalent waters of LMA and HMA sponges, with NH4+ and NO x− dominating their respective exhalent jets. Surprisingly, we found that dissolved organic matter (DOM) appeared to make a negligible contribution to the total released N, but we hypothesize that the lack of DOM utilization or production was due to methodological limitations. Our flux data combined with sponge biomass estimates indicate that sponges, particularly HMA species, are a large, and potentially dominant, source of inorganic nitrogen to Florida Bay waters.

Chemotaxis toward phytoplankton drives organic matter partitioning among marine bacteria

The microenvironment surrounding individual phytoplankton cells is often rich in dissolved organic matter (DOM), which can attract bacteria by chemotaxis. These "phycospheres" may be prominent sources of resource heterogeneity in the ocean, affecting the growth of bacterial populations and the fate of DOM. However, these effects remain poorly quantified due to a lack of quantitative ecological frameworks. Here, we used video microscopy to dissect with unprecedented resolution the chemotactic accumulation of marine bacteria around individual Chaetoceros affinis diatoms undergoing lysis. The observed spatiotemporal distribution of bacteria was used in a resource utilization model to map the conditions under which competition between different bacterial groups favors chemotaxis. The model predicts that chemotactic, copiotrophic populations outcompete nonmotile, oligotrophic populations during diatom blooms and bloom collapse conditions, resulting in an increase in the ratio of motile to nonmotile cells and in the succession of populations. Partitioning of DOM between the two populations is strongly dependent on the overall concentration of bacteria and the diffusivity of different DOM substances, and within each population, the growth benefit from phycospheres is experienced by only a small fraction of cells. By informing a DOM utilization model with highly resolved behavioral data, the hybrid approach used here represents a new path toward the elusive goal of predicting the consequences of microscale interactions in the ocean.

Processing of humic-rich riverine dissolved organic matter by estuarine bacteria: effects of predegradation and inorganic nutrients

The bioavailability of predegraded dissolved organic matter (DOM) from a humic-rich, boreal river to estuarine bacteria from the Baltic Sea was studied in 39-day bioassays. The river waters had been exposed to various degrees of bacterial degradation by storing them between 0 and 465 days in dark prior to the bioassay. The resulting predegraded DOM was inoculated with estuarine bacteria and the subsequent changes in DOM quantity and quality measured. During the incubations, dissolved organic carbon (DOC) and oxygen concentrations decreased, indicating heterotrophic activity. Coloured DOM was degraded less than DOC, indicating a selective utilization of DOM, and humic-like fluorescence components increased during the incubations. The amount of DOC degraded was not affected by the length of DOM predegradation. The percentage of bioavailable DOC (%BDOC) was higher in experiment units with added inorganic nitrogen and phosphorus than without addition (on average 13.5 % and 9.0, respectively), but had no effect on the degradation of fresh, non-predegraded, DOC (%BDOC 12.0 %). Bacterial growth efficiency (BGE) was highest (65 ± 2 %) in the units with fresh DOM, and lowest in units with predegraded DOM and no added inorganic nutrients (11 ± 4 %). The addition of inorganic nutrients increased the BGE of predegraded DOM units by an average of 28 ± 4 %. There was no significant effect on BGE by length of predegradation after the initial drop (<3 months). This study suggests that both the length of predegradation and the inorganic nutrient status in the receiving estuary has consequences to carbon cycling and will determine the amount of terrestrial-derived DOC being ultimately assimilated into marine food webs.

Dissolved organic matter composition and bioavailability reflect ecosystem productivity in the Western Arctic Ocean

Abstract. Dissolved organic carbon (DOC) and total dissolved amino acids (TDAA) were measured in high (Chukchi Sea) and low (Beaufort Sea) productivity regions of the western Arctic Ocean to investigate the composition and bioavailability of dissolved organic matter (DOM). Concentrations and DOC-normalized yields of TDAA in Chukchi surface waters were relatively high, indicating an accumulation of bioavailable DOM. High concentrations and yields of TDAA were also observed in the upper halocline of slope and basin waters, indicating off-shelf transport of bioavailable DOM from the Chukchi Sea. In contrast, concentrations and yields of TDAA in Beaufort surface waters were relatively low, indicting DOM was of limited bioavailability. Concentrations and yields of TDAA in the upper halocline of slope and basin waters were also low, suggesting the Beaufort is not a major source of bioavailable DOM to slope and basin waters. In shelf waters of both systems, elevated concentrations and yields of TDAA were often observed in waters with higher chlorophyll concentrations and productivity. Surface concentrations of DOC were similar (p &gt; 0.05) in the two systems despite the contrasting productivity, but concentrations and yields of TDAA were significantly higher (p &lt; 0.0001) in the Chukchi than in the Beaufort. Unlike bulk DOC, TDAA concentrations and yields reflect ecosystem productivity in the western Arctic. The occurrence of elevated bioavailable DOM concentrations in the Chukchi Sea implies an uncoupling between the biological production and utilization of DOM and has important implications for sustaining heterotrophic microbial growth and diversity in oligotrophic waters of the central Arctic basins.

Leaf litter age, chemical quality, and photodegradation control the fate of leachate dissolved organic matter in a dryland river

We used biodegradable dissolved organic carbon (BDOC) incubations, specific ultraviolet absorbance (SUVA254, indicator of aromatic carbon content) and laboratory experiments to determine the bioavailability and chemical composition of dissolved organic matter (DOM) leached from fresh leaves and litter aged on a seasonally dry floodplain for 2, 4, and 6 months. Our objective was to elucidate how litter age and solar radiation affect the bacterial utilization of DOM released from floodplain leaf litter when inundated. Leachate percent BDOC ranged from 22 to 47% for three different leaf species and significantly decreased (p < 0.05) with increasing litter age. However, total BDOC (mg C L−1) was unrelated to litter age. Bacterial utilization of DOM leachate collected from litter aged on the floodplain for four and six months significantly increased following 48 h of irradiation for all species but there was no difference for leachate from fresh and two month old litter. The photo-mediated increase in percent BDOC was concomitant with a decrease in aromatic carbon content, as SUVA254 values decreased on average 9 ± 6% for light exposure experiments. Our findings demonstrate that sunlight moderates the degradation of plant litter in the terrestrial environment through the photo-mediated shift in DOM composition and its bioavailability in streams.

Growth rates of different phylogenetic bacterioplankton groups in a coastal upwelling system

Microbial degradation of dissolved organic matter (DOM) in planktonic ecosystems is carried out by diverse prokaryotic communities, whose growth rates and patterns of DOM utilization modulate carbon and nutrient biogeochemical cycles at local and global scales. Nine dilution experiments (September 2007 to June 2008) were conducted with surface water from the highly productive coastal upwelling system of the Ría de Vigo (NW Iberian Peninsula) to estimate bacterial growth rates of six relevant marine bacterial groups: Roseobacter, SAR11, Betaproteobacteria,Gammaproteobacteria, SAR86 and Bacteroidetes. Surprisingly, SAR11 dominated over the other bacterial groups in autumn, likely associated to the entry of nutrient-rich, DOC-poor Eastern North Atlantic Central Water (ENACW) into the embayment. Roseobacter and SAR11 showed significantly opposing growth characteristics. SAR11 consistently grows at low rates (range 0.19-0.71 day(-1) ), while Roseobacter has a high growth potential (range 0.70-1.64 day(-1) ). In contrast, Betaproteobacteria, Bacteroidetes, SAR86 and Gammaproteobacteria growth rates widely varied among experiments. Regardless of such temporal variability, mean SAR86 growth rate (range 0.1-1.4 day(-1) ) was significantly lower than that of Gammaproteobacteria (range 0.3-2.1 day(-1) ). Whereas the relative abundance of different bacterial groups showed strong correlations with several environmental variables, group-specific bacterial growth rates did not co-vary with ambient conditions. Our results suggest that different bacterial groups exhibit characteristic growth rates, and, consequently, distinct competitive abilities to succeed under contrasting environmental conditions.

Uptake of dissolved organic matter by ephyrae of two species of scyphomedusae

Ephyrae of Aurelia labiata given dissolved organic matter (DOM) in seawater had higher carbon content than starved ephyrae. DOM-fed ephyrae of Chrysaora colorata did not have significantly higher carbon content than starved ephyrae, although the mean trend was higher. DOM-fed ephyrae of A. labiata developed aberrant morphologies similar to starved ephyrae, and neither starved nor DOM-fed ephyrae of either species developed into medusae. In addition to higher carbon content, there was evidence for DOM utilization by A. labiata shown through uptake of and increased ammonium production after exposure to a fluorescently labeled lysine polymer.

Lipid biomarkers and bacterial lipase activities as indicators of organic matter and bacterial dynamics in contrasted regimes at the DYFAMED site, NW Mediterranean

This study investigated the relationships between dissolved organic matter (DOM) composition and bacterial dynamics on short time scale during spring mesotrophic (March 2003) and summer oligotrophic (June 2003) regimes, in a 0–500 m depth water column with almost no advection, at the DYFAMED site, NW Mediterranean. DOM was characterized by analyzing dissolved organic carbon (DOC), colored dissolved organic matter (CDOM) and lipid class biotracers. Bacterial dynamic was assessed through the measurement of in situ bacterial lipase activity, abundance, production and bacterial community structure. We made the assumption that by coupling the ambient concentration of hydrolysable acyl-lipids with the measurement of their in situ bacterial hydrolysis rates (i.e. the free fatty acids release rate) would provide new insights about bacterial response to change in environmental conditions. The seasonal transition from spring to summer was accompanied by a significant accumulation of excess DOC (+5 μM) (ANOVA, p <0.05, n =8) in the upper layer (0–50 m). In this layer, the free fatty acids release rate to the bacterial carbon demand (BCD) ratio increased from 0.6±0.3 in March to 1.3±1.0 in June (ANOVA, p <0.05, n =8) showing that more uncoupling between the hydrolysis of the acyl-lipids and the BCD occurred during the evolution of the season, and that free fatty acids contributed to the excess DOC. The increase of lipolysis index and CDOM absorbance (from 0.24±0.17 to 0.39±0.13 and from 0.076±0.039 to 0.144±0.068; ANOVA, p <0.05, n= 8, respectively), and the higher contribution of triglycerides, wax esters and phospholipids (from <5% to 12–31%) to the lipid pool reflected the change in the DOM quality. In addition to a strong increase of bacterial lipase activity per cell (51.4±29.4–418.3±290.6 Ag C cell −1 h −1 ), a significant percentage of ribotypes (39%) was different between spring and summer in the deep chlorophyll maximum (DCM) layer in particular, suggesting a shift in the bacterial community structure due to the different trophic conditions. At both seasons, in the chlorophyll layers, diel variations of DOM and bacterial parameters reflected a better bioavailability and/or DOM utilization by bacteria at night (the ratio of free fatty acids release rate to bacterial carbon demand decreased), most likely related to the zooplankton trophic behaviour. In mesotrophic conditions, such day/night pattern was driving changes in the bacterial community structure. In more oligotrophic period, diel variations in bacterial community structure were depth dependent in relation to the strong summer stratification.

Effects of salinity and light on organic carbon and nitrogen uptake in a hypersaline microbial mat

Utilization of dissolved organic matter (DOM) is thought to be the purview of heterotrophic microorganisms, but photoautotrophs can take up dissolved organic nitrogen (DON) and dissolved organic carbon (DOC). This study investigated DOC and DON uptake in a laminated cyanobacterial mat community from hypersaline Salt Pond (San Salvador, Bahamas). The total community uptake of (3)H-labeled substrates was measured in the light and in the dark and under conditions of high and low salinity. Salinity was the primary control of DOM uptake, with increased uptake occurring under low-salinity, 'freshened' conditions. DOC uptake was also enhanced in the light as compared with the dark and in samples incubated with the photosystem II inhibitor 3(3,4-dichlorophenyl)-1, 1-dimethylurea, suggesting a positive association between photosynthetic activity and DOC uptake. Microautoradiography revealed that some DOM uptake was attributed to cyanobacteria. Cyanobacteria DOM uptake was negatively correlated with that of smaller filamentous microorganisms, and DOM uptake by individual coccoid cells was negatively correlated with uptake by colonial coccoids. These patterns of activity suggest that Salt Pond microorganisms are engaged in resource partitioning, and DOM utilization may provide a metabolic boost to both heterotrophs and photoautrophs during periods of lowered salinity.

Phototransformation of riverine dissolved organic matter (DOM) in the presence of abundant iron: Effect on DOM bioavailability

We conducted studies with high‐molecular‐weight (HMW) and low‐molecular‐weight (LMW), hydrophobic, and hydrophilic dissolved organic matter (DOM) from an oligotrophic alpine river, the Tagliamento River (Italy), to assess the effect of light on DOM utilization by riverine bacterioplankton. Immediately after the exposure of the DOM fractions to simulated or natural sunlight, short‐term (1 h) bacterial utilization of all DOM fractions decreased by up to 80%, compared with the uptake of the corresponding nonirradiated fractions. The addition of scavengers suggests that reactive oxygen species caused this bacterial growth inhibition. After the long‐term growth of bacteria on irradiated DOM, uptake was unchanged for HMW DOM, considerably lower for LMW and hydrophilic DOM, and much higher for hydrophobic DOM, compared with the nonirradiated fractions. These results suggest that the phototransformation of HMW, LMW, hydrophobic, and hydrophilic DOM results in contrasting effects on their bioavailability. Size‐exclusion chromatography showed that bacteria preferably used the larger molecular sizes of all nonirradiated fractions. Light induced no significant shifts in the apparent molecular weight distribution of the four DOM fractions. However, the highly bioavailable LMW DOM (especially the portion ~5 kDa) was no longer taken up after irradiation. We conclude that light overall leads to a strong decrease in microbial DOM transformation during hydrological transport in the Tagliamento River.