This study explores the properties of concrete as a sustainable substitute for cement through the use of nanosilica in an eco-friendly aggregate system. Daily life generates a larger amount of coconut shell waste from the tropical zone. In India, the yearly deposition of coconut shell is about 80,000 tonnes, which is 6.7% of total agricultural waste. Crushing gravel production emits CO2, which is an environmental concern. Simultaneously, to diminish waste disposal of coconut shell can be effectively utilised as coarse aggregate in lightweight concrete. The conventional concrete (CC) was fully replaced by coconut shell coarse aggregate and crushed gravel sand (Msand) as fine aggregate in plain Portland cement. Nanosilica replaces cement in the conventional blend at 0%, 1%, 2%, 3%, and 4%. This study describes the concrete's hardened properties, such as compressive strength, splitting tensile strength, and flexural strength. Among all the mechanical performances, the N2 blend is significant. The N2 mix exhibits a trend that aligns with the correlation between compressive strength and splitting tensile strength. The transport durability performance related to capillary wick action of the optimum blend (N2 mix) has 0.018 mm/min0.5. The pore filler mechanism and pozzolanicity of 2% NS is more synergic than other combinations. The N2 mix in H2SO4 environment has less mass and strength loss. The N2 blend's morphology is robust relative to the CC mix because of the secondary C-S-H gel and homogeneous, smooth hydrated grain. As a result, the report concludes that using coconut shell as an aggregate in concrete can reduce waste disposal in landfills, while using nanosilica in place of cement can reduce CO2 emissions.