Transport crisis in the cities has become a ubiquitous problem. In Russia, the situation is deteriorated by the absence of the methodology of conceptual design of integrated transport systems in general, and the city-street-speed railway as part of the system. To mitigate this situation, two methodological tasks have been proposed: 1) the relevance of the use of the existing rail network in the city in order to solve the transport crisis and provide the simultaneous increase of its efficiency; 2) a way of organizing a relatively short speed transportation of passengers on the ground of the rail system of urban trains similarly to S- Bahn (Stadtschnellbahn). 1 Logistic approach to the formation of public transport Slogan of times was the integration in everything and everywhere, including public transport. Globalization, which is expressed in the transport sector through inter/multimodality, even in times of crisis and the economic downturn has changed the structure of passenger flows at all levels of transport communications. It has brought to a change in the methods of calculation of passenger traffic, the destination routing traffic and the organization of their technology. Passenger service of all types of transport communication (about 15) should be based on an integrated platform of innovative transportation systems of the two levels. Macrosystems: intermodal, international, long- distance and non-urban transport; microsystems: multimodal, commuter-urban and short transport, which further considered in details. The main type of transport service in microsystem cities and agglomerations should be multifunctional rail transport. Multidimensional solution of the transport problem requires the creation of the intelligent transport and logistics system (ITLS). Passenger logistics in the city should be based on well-developed public transport infrastructure (e.g. rail and vehicles, roads, rail and street ground transportation of all kinds, land and intermodal intercity corridors, ring roads and speed diameters). Urban passenger logistics of inter/multimodal nature should objectively determine the optimal segments of the market of certain types of transport mode and their integration into the end-to-end passenger service system.