Multiyear eddy covariance measurements of methane and carbon dioxide were performed in Innsbruck, Austria, a mid-sized European city in the Alps. Annual mean methane and carbon dioxide fluxes were on the order of 21.6 nmol/m2/s and 11.7 μmol/m2/s respectively. Methane fluxes increased significantly with decreasing temperature and showed a negligible weekend to weekday effect. Accompanying non-methane volatile organic compound (NMVOC) measurements provided additional constraints on urban methane sources during an intensive 6-week campaign in 2021. Positive matrix factorization analysis identified a unique and dominant methane source. Contributions from biomass burning and vehicle emissions were found to be small. No evidence was found for a large unknown biogenic source. A second intensive campaign in 2023 revealed that the measured ethane to methane enhancement in turbulent plumes showed a typical ratio of 5.2 ± 0.6%, close to the unburned ratio of natural gas (5%) in Austria. The analysis suggests that urban methane fluxes are likely to be dominated by end-user releases rather than natural gas leaks in the pipeline system. Long-term eddy flux observations also allowed identifying the existence of urban super-emitters, which brought area weighted methane fluxes up to 39 nmol/m2/s in 2022. On average, the 100 y global warming potential of methane emitted by natural gas combustion activities is 6% relative to the total urban CO2 flux, and ∼12% relative to CO2 emissions from the residential, commercial and public sectors in Innsbruck.