Upstream Region Research Articles

Chromatin structure and 3D architecture define the differential functions of PU.1 regulatory elements in blood cell lineages

The precise spatiotemporal expression of the hematopoietic ETS transcription factor PU.1, a key determinant of hematopoietic cell fates, is tightly regulated at the chromatin level. However, how chromatin signatures are linked to this dynamic expression pattern across different blood cell lineages remains uncharacterized. Here, we performed an in-depth analysis of the relationships between gene expression, chromatin structure, 3D architecture, and trans-acting factors at PU.1 cis-regulatory elements (PCREs). By identifying phylogenetically conserved DNA elements within chromatin-accessible regions in primary human blood lineages, we discovered multiple novel candidate PCREs within the upstream region of the human PU.1 locus. A subset of these elements localizes within an 8-kb-wide cluster exhibiting enhancer features, including open chromatin, demethylated DNA, enriched enhancer histone marks, present enhancer RNAs, and PU.1 occupation, presumably mediating PU.1 autoregulation. Importantly, we revealed the presence of a common 35-kb-wide CTCF-flanked insulated neighborhood that contains the PCRE cluster (PCREC), forming a chromatin territory for lineage-specific and PCRE-mediated chromatin interactions. These include functional PCRE-promoter interactions in myeloid and B cells that are absent in erythroid and T cells. By correlating chromatin structure and 3D architecture with PU.1 expression in various lineages, we were able to attribute enhancer versus silencer functions to individual elements. Our findings provide mechanistic insights into the interplay between dynamic chromatin structure and 3D architecture in the chromatin regulation of PU.1 expression. This study lays crucial groundwork for additional experimental studies that validate and dissect the role of PCREs in epigenetic regulation of normal and malignant hematopoiesis.

Dam Siltation in the Mediterranean Region Under Climate Change: A Case Study of Ahmed El Hansali Dam, Morocco

Dams are vital for irrigation, power generation, and domestic water needs, but siltation poses a significant challenge, especially in areas prone to water erosion, potentially shortening a dam’s lifespan. The Ahmed El Hansali Dam in Morocco faces heightened siltation due to its upstream region being susceptible to erosion-prone rocks and high runoff. This study estimates the siltation at the dam from its construction up to 2014 using bathymetric data and the Brown model, which is a widely-used empirical model that calculates reservoir trap efficiency. Additionally, the study evaluates the impact of Land Use and Land Cover (LULC) changes and projected future rainfall until around 2076 based on siltation rates. The results indicate that changes in LULC, particularly temporal variations in precipitation, have a significant impact on the siltation of the Ahmed El Hansali dam. Notably, rainfall is strongly correlated with the siltation rate, with an R2 of 0.92. The efficiency of sediment trapping (TE) is 97.64%, meaning that 97.64% of the sediment in the catchment area is trapped or deposited at the bottom of the dam. The estimated annual specific sediment yield is about 32,345.79 tons/km2/yr, and the sediment accumulation rate is approximately 4.75 Mm3/yr. The dam’s half-life is estimated to be around 2076, but future precipitation projections may extend this timeframe due to the strong correlation between siltation and precipitation. Additionally, soil erosion driven by land management practices plays a crucial role in future siltation dynamics. Hence, this study offers a comprehensive assessment of the siltation dynamics at the Ahmed El Hansali dam, providing essential information on the long-term effects of erosion, land use changes, and climate projections. These findings may assist decision makers in managing dam reservoir sedimentation more effectively, ensuring the durability of the dam and extending the reservoir life.

Water Quality and Prevalence of Extended Spectrum Beta Lactamase Producing Escherichia coli (ESBL E. coli) in Sungai Terengganu, Malaysia

Antimicrobial resistance (AMR) is a significant global issue impacting human, animal, and environmental health, as well as economic security. Water bodies, especially, are now recognized for their role in the spread of antimicrobial-resistant pathogens, though standardized monitoring methods are lacking. This study investigates the presence of extended-spectrum beta-lactamase (ESBL) producing Escherichia coli in the Sungai Terengganu River in Malaysia, focusing on water quality and ESBL E. coli monitoring. Sampling was conducted twice in 2023 at 13 locations along the river. Overall, the water quality index (WQI) classified the river as Class II (WQI = 81), with upstream regions rated as Class I, indicating minimal anthropogenic impact. Higher Biological Oxygen Demand (BOD), Chemical Oxygen Demand (COD), and Total Suspended Solids (TSS) in downstream areas suggested organic pollution from anthropogenic activities. Four metal elements exceeded the National Water Quality Standards (NWQS): Al (0.88 mg/L), Fe (3.45 mg/L), Cu (0.102 mg/L), and Hg (2.525 mg/L). No Pb, Cr, Se, Sn, or As were detected. Statistical analysis showed better water quality correlates with lower microbial contamination. ESBL E. coli was found in 8 of 13 sampling sites (61.5%), with the highest concentration at 800 CFU/100 mL. From 40 presumptive ESBL isolates tested, 87.5% (35 isolates) were positive for ESBL and carried additional drug resistance genes, including mcr-1, tetW, sul-1, and sul-2. These findings indicate a concerning presence of multidrug-resistant E. coli in the river, representing a potential public health risk.

Genetic analysis of preaxial polydactyly: identification of novel variants and the role of ZRS duplications in a Chinese cohort of 102 cases.

Preaxial polydactyly (PPD) is a congenital limb malformation, previously reported to be caused primarily by variants in the ZRS and upstream preZRS regions. This study investigated genetic variations associated with PPD, focusing on point variants and copy number variations (CNVs) in the ZRS and preZRS regions. Comprehensive genetic analyses were conducted on 102 patients with PPD, including detailed clinical examinations and Sanger sequencing of the ZRS and preZRS regions. Additionally, real-time quantitative PCR (qPCR) was used to detect CNVs in the ZRS region. The evolutionary conservation and population frequencies of identified variants were also evaluated. Six point variants were identified, among which four are likely pathogenic novel variants: 93G > T (g.156584477G > T), 106G > A (g.156584464G > A), 278G > A (g.156584292G > A), and 409A > C (g.156585378A > C). Additionally, qPCR analysis revealed that 66.67% of patients exhibited ZRS duplications. Notably, these duplications were also present in cases with newly identified potential pathogenic point variants. These findings suggest the possible interaction of point variants in ZRS and preZRS through a common pathogenic mechanism, leading jointly to PPD. The findings expand the variant spectrum associated with non-syndromic polydactyly and highlight that, despite different classifications, anterior polydactyly caused by variants in ZRS and nearby regions may share common pathogenic mechanisms. The incorporation of various variant types in genetic screening can effectively enhance the rate of pathogenic variant detection and contribute to the cost-effectiveness of genetic testing for limb developmental defects, thereby promoting healthy births.

Comparison between carrier transport property and crystal quality of TlBr semiconductors

Thallium bromide (TlBr) semiconductor detectors are being developed as promising candidates for high-detection-efficiency, high-energy-resolution, and room-temperature gamma-ray spectrometers. This study presents methods for evaluating TlBr crystal quality and carrier transport characteristics using neutron Bragg-dip imaging and the time-of-flight method for pulsed-laser-induced carriers, respectively. Neutron Bragg-dip imaging effectively determines the crystal orientation distribution, revealing crystal imperfections and grain boundaries. Time-of-flight measurements provide a spatial distribution of carrier mobility. In this study, two samples obtained from both the upstream and downstream region in the crystal ingot were evaluated. Although both samples show similar crystal quality, the upstream sample showed high carrier mobility across all areas, whereas the downstream sample exhibits low mobility in some areas. These findings suggest that, at least within the range of carrier mobility currently obtained, the effect of crystal integrity on carrier mobility is less significant than that of impurities. In conclusion, combining neutron Bragg-dip imaging with carrier mobility measurements offers a comprehensive approach to evaluating and improving TlBr detectors.

Irrigation suitability assessment of urban wastewater for sustainable agriculture: a case study of Musi river, India

In urban areas with dense populations and high water demands, effective management of water resources is crucial for sustainable development. It includes optimizing water usage and recycling wastewater to balance supply and demand. Urban rivers, which now carry sewage year-round due to increased urban water consumption, are increasingly used for irrigation in peri-urban regions. This study aims to assess the suitability of an urban stream for irrigation compared to catchment groundwater, using hydrochemical parameters to evaluate water quality indices. Analysis of major ion distribution from upstream to downstream reveals a significant increase of TDS (r2 = 0.65; p < 0.001) in the surface water and a decrease (r2 = 0.93; p < 0.001) in groundwater samples. The calculated Weighted Arithmetic-Water Quality Index (WA-WQI) indicates that around 85% and 75% of surface water and groundwater samples from the Musi river are classified as very poor to unsuitable for any use, highlighting critical pollution levels. Based on irrigation suitability indices, only 16% of the surface water samples and 60% of the groundwater samples are suitable for irrigation. The nitrate concentration increased from less than 10 mg l−1 in the upstream region to over 100 mg l−1 in the urban stretch. Nitrogen-Phosphate-Potassium (NPK) ratios across the basin are exceptionally higher, representing crops irrigated using the Musi river water might not require fertilizer applications. The adoption of fertilizer application concerning supplied water hydrochemistry, particularly the NPK ratio, might limit the excess usage of fertilizer and benefit farmers. Additionally, this practice may also limits the excess input of nitrate to the groundwater in the Musi river basin.

Ensemble probability distribution of annual runoff for the past 70 years in two main watersheds of China

ABSTRACT Water resources in China, especially in the major basins of the Songhua and Yangtze Rivers, are characterized by uneven distribution both temporally and spatially, leading to notable challenges in per capita water availability. In this study, we investigate the ensemble probability distribution of annual runoff over the past 70 years in two of China's major watersheds: the Songhua River and the Yangtze River. By dividing each basin into several regions from upstream to downstream, based on annual mean discharge as a proxy for annual runoff, we observed a significant correlation between the annual runoff of the control sections and that of the upstream and downstream regions in these large watersheds. Consequently, this study establishes the probability distribution of annual runoff for each region within the basins, anchored on the design annual runoff of the control sections, using the joint bivariate logarithmic normal distribution of two interrelated random variables. Furthermore, we developed a relationship between the conditional probability distribution and correlation diagram data, and a regression equation correlating regional annual runoff with the watershed control section's runoff. This investigation into the historical patterns of runoff over the past 70 years provides a comprehensive understanding of the dynamics in these critical watersheds.

Genome-wide identification of CAMTA genes and their expression dependence on light and calcium signaling during seedling growth and development in mung bean

BackgroundCalmodulin-binding transcription activator (CAMTA) is comprised of a group of transcription factors and plays an important role in the Ca2+ signaling pathway, mediating various molecular responses via interactions with other transcription factors and binding to the promoter region of specific genes. Mung beans (Vigna radiata) are one of the most commonly consumed commodities in Asia. To date, CAMTA proteins have not been characterized in this important crop plant.ResultsEight paralogous VrCAMTA genes were identified and found to be distributed on five of the 11 chromosomes. The proteins possessed CG-1 DNA-binding domains with bipartite NLS signals, ankyrin domains, CaM-binding IQ motifs, and CaM-binding domain (CaMBD). The 2 kb upstream regions of VrCAMTA genes contained sequence motifs of abscisic acid-responsive elements (ABRE) and ethylene-responsive elements (ERE), and binding sites for transcription factors of the bZIP and bHLH domains. Analysis of RNA-seq data from a public repository revealed ubiquitous expression of the VrCAMTA genes, as VrCAMTA1 was expressed at the highest level in seedling leaves, whereas VrCAMTA8 was expressed at the lowest level, which agreed with the RT-qPCR analysis performed on the first true leaves. On day four after leaf emergence, all VrCAMTA genes were upregulated, with VrCAMTA1 exhibiting the highest degree of upregulation. In darkness on day 4, upregulation was not observed in most VrCAMTA genes, except VrCAMTA7, for which a low degree of upregulation was found, whereas no difference was found in VrCAMTA8 expression between light and dark conditions. Treatment with calcium ionophores enhanced VrCAMTA expression under light and/or dark conditions at different times after leaf emergence, suggesting that calcium signaling is involved in the light-induced upregulation of VrCAMTA gene expression.ConclusionsThe expression dependence of nearly all VrCAMTA genes on light and calcium signaling suggests their possible differential but likely complementary roles during the early stages of mung bean growth and development.

An Experimental Study of Flow and Turbulence Properties near the Rising Sector Gate Mouth Considering the Gate Opening with a PIV Measuring System

Hydraulic structures, such as movable weir gates, are widely installed in rivers and streams for various purposes. Among these is the rising sector gate, which is the focus of this study. This research investigated how different gate openings affect flow velocity and turbulence distributions at the gate mouth. A hydraulic analysis of flow and turbulence characteristics near the mouth of a rising sector gate model was conducted through laboratory experiments with various flow conditions and gate openings utilizing a Particle Image Velocimetry (PIV) system. Experimental tests were carried out with two gate-opening angles (30 and 45 degrees). The PIV measurements revealed significant variations in flow velocity and turbulence properties in response to the gate openings and flow conditions. Notably, in the vicinity of the gate mouth, where the flow regime changes rapidly between the upstream and downstream regions, the turbulence properties in the upstream part of the gate mouth were more than twice those in the downstream part. Additionally, the streamwise distribution of depth-averaged relative turbulence intensity was analyzed. The results showed that the depth-averaged relative turbulence intensity decreased by nearly half as the gate opening increased from 30 to 45 degrees, with the lowest values observed at the gate mouth, followed by an increase downstream. A functional relationship between the maximum flow velocity at the gate mouth during underflow operation and the Froude number was established to guide practical gate operation in the field.

Molecular Diversity of the Casein Gene Cluster in Bovidae: Insights from SNP Microarray Analysis.

The casein gene cluster spans 250 to 350 kb across mammalian species and is flanked by non-coding DNA with largely unknown functions. These regions likely harbor elements regulating the expression of the 4 casein genes. In Bovidae, this cluster is well studied in domestic cattle and to a lesser extent in zebu and water buffalo. This study used a cattle-specific SNP microarray to analyze 12 Bovidae taxa and estimate casein gene cluster variability across 5 bovid subfamilies. Genotyping identified 126 SNPs covering the entire casein gene cluster and 2 Mb of upstream and downstream regions. Dairy cattle, watusi, and zebu showed the highest polymorphism: 63.7-68.2% in the 5'-upstream region, 35.6-40.0% in the casein cluster, and 40.4-89.4% in the 3'-downstream region. Among wild bovids, only a 'semi-aquatic' lechwe revealed high polymorphism similar to cattle. Other species exhibited lower variability, ranging from 9.1-27.3% in the 5'-upstream, 8.9-20.0% in the casein, and 4.2-10.6% in the 3'-downstream regions. For the first time, genome variability data were obtained for impala, waterbuck, and lechwe. It appears that higher variability in cattle's casein gene cluster may relate to its intense expression. This study confirms the effectiveness of cattle-derived microarrays for genotyping Bovidae.

Source apportionment and ecological risk assessment of antibiotics in Dafeng River Basin using PMF and Monte-Carlo simulation.

Antibiotics, prevalent in aquatic ecosystems, pose a grave threat to human health and the ecological well-being. This paper performed a case study on Dafeng River Basin in southern China. Specifically, techniques including positive matrix factorization (PFM) and Monte-Carlo simulation were employed to comprehensively investigate the spatial variations, possible sources, and ecological risks of antibiotics in four groups: sulfonamides (SAs), macrolides (MLs), quinolones (QNs), and tetracyclines (TCs). The major findings were as follows: first, 43 and 39 antibiotics were detected in the surface water and sediments of the basin, respectively, where the respective total content were ND-490.08ng/L and ND-144.34μg/kg, and the QNs and TCs were the two dominating groups. Second, the highest antibiotic content in surface water (441.43ng/L) was observed in the midstream area, whereas the highest concentration in sediments (68.41μg/kg) was found in the upstream region. Third, the investigation identified five sources of antibiotics discharged to surface water: domestic sewage, agricultural drainage, livestock discharge, sewage treatment plants, and aquaculture; three sources were detected for antibiotics in sediments: aquaculture, sewage treatment plants, and livestock discharge. Fourth, QNs had a significantly higher ecological risk than the other three groups of antibiotics, and livestock discharge (31.4% contribution) and aquaculture (23.4% contribution) were the main sources of risks of antibiotic contamination in Dafeng River Basin. This study is expected to provide some reference for control and risk management of antibiotic pollution in Dafeng River Basin.

Co-Regulation Mechanism of Host p53 and Fos in Transcriptional Activation of ILTV Immediate-Early Gene ICP4.

Infectious laryngotracheitis virus (ILTV) exhibits a cascade expression pattern of encoded genes, and ICP4 is the only immediate-early gene of ILTV, which plays a crucial role in initiating the subsequent viral genes. Therefore, studying the transcriptional regulation mechanism of ICP4 holds promise for effectively blocking ILTV infection and spread. Host transcriptional factors p53 and Fos are proven to regulate a variety of viral infections, and our previous studies have demonstrated their synergistic effects in regulating ILTV infection. In this study, we constructed eukaryotic expression vectors for p53 and Fos as well as their specific siRNAs and transfected them into a chicken hepatoma cell line. The results showed that knocking down p53 or Fos significantly inhibited ICP4 transcription, while overexpressing p53 or Fos had an opposite effect. A further CoIP and ChIP-qPCR assay suggested p53 and Fos physically interacted with each other, and jointly bound to the upstream transcriptional regulatory region of ICP4. To elucidate the specific mechanisms of p53 and Fos in regulating ICP4 transcription, we designed p53 and Fos protein mutants by mutating their DNA binding domains, which significantly reduced their binding ability to DNA without affecting their interaction. The results showed that Fos directly bound to the promoter region of ICP4 as a binding target of p53, and the p53-Fos protein complex acted as a transcriptional co-regulator of ICP4. Studying the transcriptional process and regulatory pattern of ICP4 is of great significance for understanding the molecular mechanism of ILTV infection, and thus for finding effective methods to control and prevent it.

Hydrologic Responses to Climate Change and Implications for Reservoirs in the Source Region of the Yangtze River

ABSTRACTUnderstanding the hydrological impacts of climate change is essential for robust and sustainable water management. This study assessed the hydrologic conditions under changing climate in the Jinshajiang River basin, the source region of the Yangtze River, using the hydrological model SWAT with the historical observations and the future climate simulations under two Shared Socioeconomic Pathways (SSP2‐4.5 and SSP5‐8.5). For the historical period, with an increasing trend of precipitation, evapotranspiration, and snowmelt, streamflow increases in upstream region but keeps decreasing in the downstream catchment. For future scenarios, a warmer and wetter climate is projected for the basin throughout the 21st century, leading to an overall increase in mean and extreme streamflow. The streamflow magnitude increases more significantly in the far future than in the near future, and more significant under SSP5‐8.5 than SSP2‐4.5. The projected remarkable increase in precipitation causes the transition in changing trend of streamflow compared with the historical period. The projected warming leads to a continuing decline in snowfall and snow water equivalent, followed by an earlier snowmelt and higher peak streamflow, especially at the upstream catchment. Ultimately, reservoirs in the basin are expected to gain more inflows, however, with greater variability including higher likelihoods of flood and drought events, which impose potential challenges on reservoir operations. These outcomes indicate the importance of adaptive water resources management in the melting water contributed basin to sustain and enhance its services under global warming.

Community composition and co-occurrence of free-living and particle-attached bacteria in the source region of the Ganges and Brahmaputra Rivers.

Bacteria have two trophic lifestyles in aquatic ecosystems, i.e., free-living (FL) and particle-attached (PA), with different but essential ecological roles. However, relevant knowledge is still dearth in the upstream source region of the Himalayan Rivers. Thus, we emphasized a comparative study on community composition, co-occurrence, and geographic distribution of the FL and PA bacteria and the effect of environmental factors in the source region of the Ganges and Brahmaputra Rivers. PA bacteria relative to FL harbored a significantly higher local diversity, richness, and evenness. A significantly higher abundance of Betaproteobacteria, Verrucomicrobiota, and Planctomycetota in PA trophic lifestyle and Gammaproteobacteria and Actinomycetota in FL tropic lifestyle and indicator OTUs belonging to related taxa were observed. The spatial variation of the FL and PA bacterial communities was most significantly impacted by dispersal limitation as a discrete factor. Among the environmental parameters, the total nitrogen (TN) was found to be a significant (P < 0.001) driver of the variation in PA communities. Meanwhile, particulate organic carbon (POC) and TN considerably explained the variation of FL communities. A significant correlation (P < 0.001) of TN with dominant bacterial taxa (Pseudomonadota, Actinomycetota, and Verrucomicrobiota) and FL and PA indicator OTUs associated with these taxa further confirmed nitrogen as the limiting nutrient in the source region of the Ganges and Brahmaputra Rivers. The co-occurrence network topological characteristics showed that the PA network was more stable than the FL network, which was more complicated and unstable. Thus, it can be speculated that FL communities relative to PA are more vulnerable to shifting upon disturbances.

An experimental study on heat transfer using electrohydrodynamics (EHD) over a heated vertical plate.

The Corona effect offers significant potential for improving heat transfer efficiency in air. This study thoroughly examined how a single corona discharge affects heat transfer on a heated vertical flat plate. Key parameters tested included corona voltage, the aspect ratio of the vertical plate (y/L), and the inter-electrode discharge gap ratio (x/d). The findings revealed that increasing the corona voltage and decreasing the discharge gap enhanced heat transfer efficiency along the vertical surface. A predictive formula for the local Nusselt number was developed to characterize heat transfer on the plate. Additionally, Particle Image Velocimetry (PIV) was used to analyze the corona wind generated by the discharge. The study observed that the corona wind formed a vortex in the upstream region, which resulted in lower heat transfer rates upstream compared to the downstream region.

Interdecadal Springtime Aerosol Increase in the North Indian Ocean Observed From the Satellite AVHRR Instrument

AbstractA 38‐year aerosol optical thickness (AOT) satellite product from the Advanced Very High‐Resolution Radiometer (AVHRR) is used to investigate the aerosol variabilities in the North Indian Ocean (NIO). A dipolar mode with a notable meridional contrast between the equatorial and northern NIO is revealed by the second mode of Empirical Orthogonal Function (EOF) analysis with a sharp rise over the Arabian Sea (AS) and Bay of Bengal (BoB) since 2002. Our results show that the aerosol dipolar variation is primarily modulated by an El Niño–Southern Oscillation (ENSO) during 1983–2001 (ID1) and by a warm phase of Atlantic Multi‐decadal Oscillation (AMO) during 2002–2020 (ID2), leading to a dry‐and‐warming condition spanning the coasts of East Africa, the Arabian Peninsula (AP), and South Asia (SA) that favors increasing aerosol emission and a longer life cycle in the upstream regions. A warm phase of the AMO tends to excite an anomalous cyclone in western Siberia and reinforces anticyclonic circulation in the Tibetan Plateau. Correlation analyses between the second EOF mode time series and other parameters in ID1 and ID2 show that an interannual dry‐and‐warming condition over the AP–SA is associated with a noticeable north‐south contrast of convection between the equatorial NIO and AP–SA in ID1. But in ID2, a zonal contrast of anomalous convective activities between the AP–SA and the BoB‐South China Sea is dominant, partially due to the warming AMO, which aids the development of anticyclonic cells over the TP and the strengthened subtropical westerly jet streams.

Genome-wide identification and gene expression networks of LBD transcription factors in Populus trichocarpa

The Lateral Organ Boundaries Domain (LBD) proteins, an exclusive family of transcription factors (TFs) found solely in plants, play pivotal roles in lateral organogenesis, stress adaptation, secondary growth, and hormonal signaling responses. In this study, a total of 55 PtLBD TFs from Populus trichocarpa were identified and systematically classified into two subfamilies, designated as subfamily-I and subfamily-II with seven distinct groups based on phylogenetic analysis. Gene structure detection indicated that the difference of phase numbers linking adjacent exons contribute to the variations in splicing patterns among different PtLBD groups. Numerous transcription factor binding sites and cis-elements pertinent to hormone signaling pathways and stress response mechanisms were identified within the upstream promoter regions of the PtLBD genes. Thirty-five PtLBDs were found to be engaged in either tandem or segmental duplications, and genomic collinearity analysis revealed a stronger alignment between PtLBD genes and eudicots plants compared to their relationship with monocots. GO enrichment and temporal-spatio expression patterns showed that PtLBD7 from subfamily-I and PtLBD20 from subfamily-II, along with other 13 PtLBDs, were involved in plant growth and development biological processes. The multilayered hierarchical gene networks (ML-hGRN) mediated by PtLBD7 and PtLBD20 indicated that PtLBDs were mainly function in poplar growth and stress tolerance through a multifaceted and intricate regulatory machinery. This study lays a solid groundwork for delving deeper into the roles and underlying mechanisms of LBD transcription factors in poplar, specifically those related to plant hormones and stress tolerance.

Identification of a 301 bp promoter core region of the SrUGT91D2 gene from Stevia rebaudiana that contributes to hormone and abiotic stress inducibility

BackgroundThe UDP-glucuronosyltransferase 91D2 (SrUGT91D2) gene is a crucial element in the biosynthetic pathway of steviol glycosides (SGs) and is responsible for creating 1,2-β-D glucosidic bonds at the C19 and C13 positions. This process plays a vital role in the synthesis of rebaudioside M (RM) and rebaudioside D (RD). The promoter, which regulates gene expression, requires functional analysis to understand gene expression regulation. However, investigations into the function of the promoter of SrUGT91D2 (pSrUGT91D2) have not been reported.ResultsThe pSrUGT91D2 was isolated from six S. rebaudiana lines, and subsequent multiple sequence comparisons revealed the presence of a 26 bp inDel fragment (pSrUGT91D2-B1188 type) in lines GP, GX, 110, 1114, and B1188 but not in the pSrUGT91D2 of line 023 (pSrUGT91D2-023 type). Bioinformatics analysis revealed a prevalence of significant cis-regulatory elements (CREs) within the promoter sequences, including those responsive to abscisic acid, light, anaerobic conditions, auxin, drought, low temperature, and MeJA. To verify the activity of pSrUGT91D2, the full-length promoter and a series of 5’ deletion fragments (P1–P7) and a 3’ deletion fragment (P8) from various lines were fused with the reporter β-glucuronidase (GUS) gene to construct the plant expression vector, pCAMBIA1300-pro∷GUS. The transcriptional activity of these genes was examined in tobacco leaves through transient transformation. GUS tissue staining analysis and enzyme activity assays demonstrated that both the full-length promoter and truncated pSrUGT91D2 were capable of initiating GUS expression in tobacco leaves. Interestingly, P8-pSrUGT91D2-B1188 (containing the inDel segment, 301 bp) exhibited enhanced activity in driving GUS gene expression. Transient expression studies of P8-pSrUGT91D2-B1188 and P8-pSrUGT91D2-023 in response to exogenous hormones (abscisic acid and indole-3-acetic acid) and light indicated the necessity of the inDel region for P8 to exhibit transcriptional activity, as it displayed strong responsiveness to abscisic acid (ABA), indole-3-acetic acid (IAA), and light induction.ConclusionsThese findings contribute to a deeper understanding of the regulatory mechanism of the upstream region of the SrUGT91D2 gene and provide a theoretical basis for future studies on the interaction between CREs of pSrUGT91D2 and related transcription factors.

Study on the ecosystem service flow based on the relationship of between supply and demand in Yangtze River Economic Belt

Ecosystems supply goods and services to humans and are the basis for sustainable development of human society. The study of the supply of ecosystem services and the demand and consumption of ecosystem services by human society, and the analysis of the supply and demand characteristics and flow relationships of ecosystem service flows are of great significance for the management of regional ecosystems and the development of ecological compensation. Taking the Yangtze River Economic Belt as an example, this paper calculates the supply and demand indices of ecosystem services in 2015 and 2020, and determines the ecosystem spatial flow paths and flow volumes from the ecosystem supply area to the demand area based on various methods and models such as the minimum cumulative resistance (MCR) model and distance decay model. The results indicate that 1). In 2015 and 2020, the supply and demand of ecosystem services in the Yangtze River Economic Zone show an increasing trend numerically, and there is spatial heterogeneity in the spatial distribution. In terms of ecosystem service supply per unit area, the midstream region is higher than the upstream and downstream regions. In terms of the demand for ecosystem services per unit area, the downstream is higher than the midstream and upstream. 2). From the supply-demand balance of ecosystem services in the Yangtze River Economic Zone, the midstream region is mainly the area of surplus supply of ecosystem services, and the downstream region is mainly the area of deficit supply. From 2015 to 2020, the number of areas with balanced supply and demand of ecosystem services in the Yangtze River Economic Belt decreases and the number of areas with unbalanced supply and demand increases, which is related to the changes in the level of economic development and land use patterns. 3). The flow of ecosystem services in the Yangtze River Economic Belt shows an increasing trend, from 726.59 billion yuan in 2015 to 1,450.54 billion yuan in 2020, with Jiangxi Province being the main ecosystem service supply area and Zhejiang Province being the main ecosystem service demand area in the Yangtze River Economic Belt.

Using hydrochemistry and stable isotopes to character the karst water environment in a cave site, South China

For cave sites located within the seasonal fluctuation zone of groundwater, obtaining a comprehensive understanding of the hydrogeological conditions and hydrochemical environment is of utmost importance in assessing the preservation of cultural deposits. However, due to the heterogeneity of karst development, the hydrochemical environment of the overburden karst water-bearing unit may exhibit complex variations. In this study, the characteristics of the water environment in a foot cave system and its surrounding aquifer were investigated at the Zengpiyan site, employing hydrochemistry, hydrogen and oxygen isotope analysis, as well as sulfate isotope analysis, in conjunction with the hydrogeological background. Based on the exposure of the karst cave and the groundwater flow conditions, the water-bearing medium was categorized into five types. The aquifer exhibited either an oxidation or reduction condition, with a distinct "dissolved oxygen hole" observed in the saturated zone of the cave site. Ion concentration analysis revealed that the groundwater was influenced by the prior accumulation of cinders in the upstream region, leading to sulfate contamination within the foot cave system. However, during the groundwater movement from upstream to downstream, the attenuation rate of pollutants displayed significant variations. Notably, the sulfate content was unusually low within the site cave. Hydrogen and oxygen isotopes provided insights into the differing circulation and movement velocities of groundwater within the local environment. Additionally, sulfate isotopes confirmed the sources of sulfate and the occurrence of bacterial sulfate reduction within the site cave. Consequently, an environmental zoning classification was established based on these analyses. Although the concentration of dissolved ions appears low in the anoxic area, it does not imply a diminished environmental risk. Under reducing conditions, these pollutants can be converted into more aggressive gases, posing a substantial threat to the preservation environment of cave sites. Therefore, sufficient attention should be given to this aspect in order to ensure adequate protection.