Uplift Of Himalayas Research Articles

Chromosome-scale assembly and analysis of yellow Camellia (Camellia limonia) genome reveal plant adaptation mechanism and flavonoid biosynthesis in karst region

Yellow Camellia is an endangered and protected wild plant with unique medicinal value. Among the Camellia Sect. Chrysantha Chang, certain species (e.g. Camellia limonia) can grow in karst regions. The karst region is a highly sensitive ecosystem with low environmental capacity. However, the molecular mechanisms underlying the adaptation of yellow camellia to karst regions remain unclear. Here, we present a high-quality genome with 15 chromosome groups with an N50 of 198.92Mb. The divergence between C. limonia and Camellia sinensis occurred approximately 6 million years ago, indicating that the Himalayan uplift event may led to species differentiation. This enables C. limonia to thrive in a unique ecological environment like the karst region. Flavonoid compounds play a significant role in the interaction between plants and their environment. In comparison to Theaceae family genomes, C. limonia exhibits an increased number of gene family members involved in the flavonoid biosynthesis pathway, including UDP-glycosyltransferases and chalcone reductase. Additionally, two gene clusters associated with flavonoid biosynthesis were identified in the genome of C. limonia. Furthermore, comparative genomics analysis revealed the expansion of genes associated with karst environment adaptation in the genome of C. limonia, such as calmodulin genes and genes related to Calcium ion transmembrane transport. Additionally, at the gene expression level, it was observed that the secondary metabolism-related genes may be involved in the calcium tolerance of C. limonia. These findings provide important insights into the evolution of C. limonia, offering references for the study of plants in karst areas.

Geomorphological evidence inconvenient for the antecedent rivers of the Arun and Tista across the Himalayan range

The Arun and Tista Rivers, which flow across the Himalayas, are commonly known as antecedent valleys that overcame the rapid uplift of the Higher Himalayan ranges. To clarify whether the idea of antecedent rivers is acceptable, we investigated the geomorphology of the Himalayas between eastern Nepal and Bhutan Himalayas. The southern part of Tibetan Plateau, extending across the Himalayas as tectonically un-deformed glaciated terrain named as ‘Tibetan Corridor,’ does not suggest the regional uplift of the Higher Himalayas. The 8,000-m class mountains of Everest, Makalu, and Kanchenjunga are isolated residual peaks on the glaciated terrain composed of mountain peaks of 4,000–6,000 m high. The Tibetan glaciers commonly beheaded by Himalayan glaciers along the great watershed of the Himalayas suggest the expansion of Himalayan river drainage by glaciation. For the narrow upstream regions of the Arun and Tista Rivers with less precipitation behind the range, it is hard to collect enough water for the power of down-cutting their channels against the uplifting Himalayas. The fission track ages of the Higher Himalayan Crystalline Nappe suggest that the Himalayas attained their present altitude by 11–10 Ma, and the Arun and Tista Rivers formed deep gorges across the Himalayas by headward erosion.

The Origin of Evergreen Broad-Leaved Forests in East Asia from the Evidence of Floristic Elements.

Arguments about the origin and evolution of the evergreen broad-leaved forests in East Asia exist generally, and are even contradictory in some cases. The origin and evolution of the flora of East Asia, especially in the evolutionary process, the formation time of the Asian monsoon, the implications of phylogenetic and biogeographic studies on some important taxa, and the implications of palaeobotanical evidence are debatable. Most research from different disciplines suggests that the monsoon in the Miocene was key to the diversification of East Asian flora and its evergreen broad-leaved forests. The common view is that the evergreen broad-leaved forests of East Asia are closely related to the monsoon's intensity and developments, which were caused by the uplift of Himalaya-Tibet during or after the mid-Miocene. Analysis of the floristic elements show that the present subtropical evergreen broad-leaved forests in East Asia could have an early or ancient tropical origin and a tropical Asian affinity, but that their species are dominated by endemic Chinese or East Asian ones, many of which have tropical Asian affinity or are tropical sister species. The time of Himalayan uplift and the intensity of the monsoon climate are believed to be key to the formation of the evergreen broad-leaved forests in East Asia. Combined with existing paleobotanical findings, the uplift of the Himalayas and the formation of the monsoon climate, as well as floristic elements of the subtropical evergreen broad-leaved forests, we believe that they evolved from an Asian tropical rainforest after the mid-Miocene in the southeastern region of East Asia, while the ancient subtropical evergreen broad-leaved forests in the southwestern region continuously evolved into the present subtropical ones.

Petrography, geochemistry and detrital zircon U–Pb dating of the Pliocene‐Pleistocene Dupi Tila Formation from the Lalmai Anticline, Bengal Basin: Regional tectonic implications

The Bengal Basin is a well‐known foreland basin that archives the tectonic evolution of the Himalayan and Indo‐Burman Ranges (IBR). The Dupi Tila Formation is the youngest among the stratigraphic successions of the Bengal Basin, which witnessed the last phase of the Himalayan uplift. However, there is still controversy regarding sediment provenances since the Himalayan and IBR are in the late Neogene exhumation stage. In this study, the petrographical and geochemical compositions of the Dupi Tila sandstones from the Lalmai Anticline of the Bengal Basin are examined to infer the source rocks, tectonic settings, palaeoclimate and weathering intensity in provenance areas. The detrital modes and geochemical discriminations, as well as Chondrite‐normalized rare earth elements patterns with enrichment in light rare earth elements and nearly flat heavy rare earth elements and negative Eu anomalies (average Eu/Eu* = 0.77) indicate dominantly felsic source rocks. The geochemical data also suggest that these source rocks in provenance areas were influenced by weak to moderate chemical weathering (chemical index of alteration: 65.64–75.62) and multiple recycling under warm and humid to semi‐humid climatic conditions. The detrital zircon ages show three dominant peaks at ca. 100, 500 and 1000 Ma with minor 1700 Ma. The amount of young zircon grains (<120 Ma) is noticeably higher (~18%) in this Lalmai outcrop compared to the Dupi Tila samples from the Sylhet Trough and Chittagong‐Tripura Fold Belt. Results from integrated zircon geochronology and geochemistry indicate that the detritus are likely derived from a recycled orogen provenance related mainly to active continental margin setting with subordinate influence from passive setting. Therefore, the regionally extensive Himalayan Orogen appears to be the primary sediment source, with additional mixing from the IBR and recycled sediments originating from the Gangdese batholith of the Trans‐Himalaya.

The Himalayan uplift and evolution of aquatic biodiversity across Asia: Snowtrout (Cyprininae: Schizothorax) as a test case.

Global biodiversity hotspots are often remote, tectonically active areas undergoing climatic fluctuations, such as the Himalaya Mountains and neighboring Qinghai-Tibetan Plateau (QTP). They provide biogeographic templates upon which endemic biodiversity can be mapped to infer diversification scenarios. Yet, this process can be somewhat opaque for the Himalaya, given substantial data gaps separating eastern and western regions. To help clarify, we evaluated phylogeographic and phylogenetic hypotheses for a widespread fish (Snowtrout: Cyprininae; Schizothorax) by sequencing 1,140 base pair of mtDNA cytochrome-b (cytb) from Central Himalaya samples (Nepal: N = 53; Bhutan: N = 19), augmented with 68 GenBank sequences (N = 60 Schizothorax/N = 8 outgroups). Genealogical relationships (N = 132) were analyzed via maximum likelihood (ML), Bayesian (BA), and haplotype network clustering, with clade divergence estimated via TimeTree. Snowtrout seemingly originated in Central Asia, dispersed across the QTP, then into Bhutan via southward-flowing tributaries of the east-flowing Yarlung-Tsangpo River (YLTR). Headwaters of five large Asian rivers provided dispersal corridors from Central into eastern/southeastern Asia. South of the Himalaya, the YLTR transitions into the Brahmaputra River, facilitating successive westward colonization of Himalayan drainages first in Bhutan, then Nepal, followed by far-western drainages subsequently captured by the (now) westward-flowing Indus River. Two distinct Bhutanese phylogenetic groups were recovered: Bhutan-1 (with three subclades) seemingly represents southward dispersal from the QTP; Bhutan-2 apparently illustrates northward colonization from the Lower Brahmaputra. The close phylogenetic/phylogeographic relationships between the Indus River (Pakistan) and western tributaries of the Upper Ganges (India/Nepal) potentially implicate an historic, now disjunct connection. Greater species-divergences occurred across rather than within-basins, suggesting vicariance as a driver. The Himalaya is a component of the Earth's largest glacial reservoir (i.e., the "third-pole") separate from the Arctic/Antarctic. Its unique aquatic biodiversity must be defined and conserved through broad, trans-national collaborations. Our study provides an initial baseline for this process.

A small Greater India restored by Himalayan crustal mass balance calculations

Greater India, a postulated northern extension of the modern Indian continent that has been subducted beneath Tibetan Plateau, is needed to constrain the process of the greatest collision event between India and Asia. However, how far Greater India extends northward remains controversial, with proposed estimates from 100 to 2400 km. Here, we calculate Greater India’s size by estimating the crustal mass balance of the Himalaya, as Himalaya was created by the peeling-off of Greater India’s crust during the convergence. Our results show that Greater India only extends northward ∼ 620 km, further indicating that the Greater India continental subduction started at ∼ 24 Ma with the velocity of India from marine magnetic anomalies. This timing corresponds to the Himalayan uplift age. This result leaves open the possibility of both one-stage and two-stage India-Asia collision assuming that the massive Indian continental subduction started only long after the initial collision.

Decoupling of physical and chemical erosion in the Himalayas revealed by radiogenic Ca isotopes

Determining the rate of CO2 consumption associated with the Himalayan uplift is an essential prerequisite to understanding climate evolution throughout the Cenozoic. The riverine fluxes of dissolved calcium can be used to quantify uptakes of atmospheric CO2 by chemical weathering, but this approach requires deciphering the silicate-derived Ca flux from the generally dominant carbonate-derived Ca flux. Here we present high-precision radiogenic calcium (40Ca) analyses of bank sediments and dissolved loads from a network of rivers in central Nepal Himalaya and Bangladesh, to constrain the sources and relative contributions of carbonate and silicate-derived calcium to the dissolved loads of Himalayan rivers. Calcium isotope analyses were performed in multidynamic mode by thermal ionization mass spectrometry, yielding an external precision of ±0.4 ε-units (2 S.D.). Our results show that silicate catchments exposed in the Himalayan range have variably radiogenic ε40Ca compositions relative to seawater, ranging from +0.7 in the TSS to +14 in the LH. In contrast, sedimentary carbonates, including metamorphosed dolomites with variably radiogenic 87Sr/86Sr, exhibit uniform ε40Ca identical to modern seawater. The homogeneous ε40Ca composition of sedimentary carbonates confirms the relative resistance of radiogenic Ca signatures to post-depositional alteration and provides a robust baseline against which the contribution of silicate weathering to the riverine Ca flux can be evaluated. Dissolved load compositions of rivers draining LH catchments exhibit ε40Ca values ranging from 0 to +11, reflecting the relative contribution of unradiogenic carbonates and highly radiogenic metapelitic units of the LH sequence. HHC rivers show a more moderate range, from 0.5 to +2, reflecting the less radiogenic composition of HHC paragneisses. Himalayan front rivers draining all three lithotectonic units of the Himalayan range exhibit moderately radiogenic ε40Ca, ranging from +0.5 to +1.4 and overall similar to the average composition of the Ganga mainstream in Bangladesh. Using an approach combining conventional alkalinity budgets with isotopic mass balance calculations, we show that the dissolved silicate Ca flux of major Himalayan front rivers is primarily derived from the weathering of metapelitic rocks of the lesser Himalaya. In contrast, regions of the high range that generate the bulk of the detrital flux to the Gangetic floodplain represent a subordinate source of silicate-derived Ca. This result demonstrates that the chemical weathering of Ca-silicates in the Himalayan system is decoupled from physical erosion. The extensive erosional activity observed in the high range may thus play a limited role in promoting CO2 consumption and global cooling by silicate weathering.

The stepwise Indian-Eurasian collision and uplift of the Himalayan-Tibetan plateau drove the diversification of high-elevation Scytodes spiders.

The Cenozoic Indian-Eurasian collision and uplift of the Himalayan-Tibetan Plateau (HTP) are among the most important geological events in the world. They have affected the diversification of regional biota of many taxonomic groups on and around the HTP. However, the exact timing and model of the collision and uplift events and speciation on and around the HTP are still in debate. The Himalayas group of Scytodes spitting spiders (Araneae: Scytodidae) are distributed at high elevations of the HTP and northern Indochina. Here, we reconstruct a dated molecular phylogeny for pan-Himalayan Scytodes spiders, including the Himalayas group, with full geographical sampling of the species from the HTP and Indochina. We test a hypothesis to explain that the rich montane biodiversity of the region is uplift-driven diversification-that orogeny drives rapid in situ speciation of the resident Scytodes lineages. Our findings revealed that the separation of the Himalayas clade from the Myanmar clade took place during the middle Oligocene, reflecting the final collision of India with Eurasia. The deep divergences among three clades (the Himalayas, the Myanmar and the Indochina clades) occurred from the middle Eocene to the middle Oligocene, corresponding to two early uplift events of the HTP. The evolutionary split between the Himalayas + Myanmar and Indochina clades were simultaneous with the rapid lateral extrusion of Indochina by the initial Himalayan uplift around the Eocene. This study highlights the importance of the diversification of dispersal-limited, high-elevation invertebrates as independent lines of evidence to reflect key tectonic events in the Himalayan-Indochina region, supporting the stepwise model for the Indian-Eurasian collision and uplift of HTP.

Phylogeography and Population History of Eleutharrhena macrocarpa (Tiliacoreae, Menispermaceae) in Southeast Asia’s Most Northerly Rainforests

The diversification of Tiliacoreae and the speciation of Eleutharrhena are closely linked to Southeast Asia’s most northerly rainforests which originate from the Himalayan uplift. Migration routes across biogeographical zones within the Asian clade, including those of Eleutharrhena, Pycnarrhena, and Macrococculus, and their population structures are still unexplored. We combine endocarp morphology, phylogenetic analyses, divergence time estimation, ancestral area reconstruction, as well as SCoT method to reconstruct the past diversification of Eleutharrhena macrocarpa and to understand their current distribution, rarity, and evolutionary distinctiveness. The disjunct, monospecific, and geographically restricted genera Eleutharrhena and Macrococculus both have a dry aril, a unique feature in Menispermaceae endocarps that further confirms their close relationship. Pycnarrhena and Eleutharrhena appeared during the end of the Oligocene c. 23.10 million years ago (Mya) in Indochina. Eleutharrhena speciation may be linked to climate change during this time, when humid forests became restricted to the northern range due to the Himalayan uplift. Differentiation across the Thai–Burmese range could have contributed to the isolation of the Dehong populations during the Miocene c. 15.88 Mya, when exchange between India and continental Asia ceased. Dispersal to the Lanping–Simao block and further differentiation in southeastern and southern Yunnan occurred during the Miocene, c. 6.82 Mya. The specific habitat requirements that led to the biogeographic patterns observed in E. macrocarpa contributed to a low genetic diversity overall. Population 1 from Dehong, 16 from Pu’er, and 20 from Honghe on the East of the Hua line have a higher genetic diversity and differentiation; therefore, we suggest that their conservation be prioritized.

Flora and Vegetation of Yunnan, Southwestern China: Diversity, Origin and Evolution

Yunnan has a complicated geological history, a particular geography, and a complex topography, which have influenced the formation of various habitats of high biodiversity: 245 families; 2140 genera; 13,253 species and varieties of seed plants; more than 12 types of vegetation; and 167 plant formations, including tropical rain forests, tropical dry forests, subtropical evergreen broad-leaved forest, cold temperate coniferous forests, and alpine bushes and meadows. An analysis of the geographic elements to the current Yunnan flora shows that the tropical distribution contributed to 51% of all families and to 57.5% of all genera, of which the genera from the tropical Asian distribution make up the highest proportion among all geographical elements. During the late evolution of Yunnan, its flora was strongly affected by the tropical Asian flora. The complicated patterns and diversity in Yunnan flora and vegetation have been shaped mainly by its particular geological histories, which include the differential uplifts in topography, the clock-wise rotation of the Simao-Lanping geoblock, and the extrusion of the Indochina geoblock by the Himalayan uplift. The flora and vegetation of Yunnan were possibly derived from tropical-subtropical Tertiary flora before later diverging. Northwestern Yunnan flora likely evolved due to rapid speciation from families and genera from cosmopolitan and northern temperate distributions during the uplift of the Himalayas and climatic oscillations after the late Tertiary. Southern Yunnan flora likely evolved into tropical Asian flora following the southeastward extrusion of the Indochina block, which brought along tropical Asian elements. Central Yunnan flora inherited most of the elements of the Tertiary flora from East Asia. The formation and strengthening of the southwest monsoon by the uplift of the Himalayas was also a direct factor in the formation of the tropical rain forests found in southern Yunnan. The flora from southern and southeastern Yunnan also diverged, with the former being more closely related to Indo-Malaysian flora and the latter being more closely related to Eastern Asian flora. This floristic divergence is well supported by the geological history of these regions: that is, the tropical flora of southeastern Yunnan derived from the South China geoblock, whereas the flora of southern and southwestern Yunnan mainly derived from the Shan-Thai geoblock.

Neogene South Asian monsoon rainfall and wind histories diverged due to topographic effects

The drivers of the evolution of the South Asian Monsoon remain widely debated. An intensification of monsoonal rainfall recorded in terrestrial and marine sediment archives from the earliest Miocene (23–20 million years ago (Ma)) is generally attributed to Himalayan uplift. However, Indian Ocean palaeorecords place the onset of a strong monsoon around 13 Ma, linked to strengthening of the southwesterly winds of the Somali Jet that also force Arabian Sea upwelling. Here we reconcile these divergent records using Earth system model simulations to evaluate the interactions between palaeogeography and ocean–atmosphere dynamics. We show that factors forcing the South Asian Monsoon circulation versus rainfall are decoupled and diachronous. Himalayan and Tibetan Plateau topography predominantly controlled early Miocene rainfall patterns, with limited impact on ocean–atmosphere circulation. The uplift of the East African and Middle Eastern topography played a pivotal role in the establishment of the modern Somali Jet structure above the western Indian Ocean, while strong upwelling initiated as a direct consequence of the emergence of the Arabian Peninsula and the onset of modern-like atmospheric circulation. Our results emphasize that although elevated rainfall seasonality was probably a persistent feature since the India–Asia collision in the Paleogene, modern-like monsoonal atmospheric circulation only emerged in the late Neogene. A modern-like South Asian Monsoon only appeared when East African and Middle Eastern uplift led to the establishment of the Somali Jet around 13 million years ago, according to Earth system modelling using a range of regional palaeogeographies.

A new species of bent-toed geckos of the genus Cyrtodactylus Gray, 1827 from western Arunachal Pradesh, India

A new species of bent-toed geckos of the genus Cyrtodactylus is described from western Arunachal Pradesh. The new species is a member of the Indo-Burma clade and is embedded within the “peguensis” group, a relationship deduced contingent on a partial fragment of mitochondrial NADH subunit 2 gene. Cyrtodactylus kamengensissp. nov. is morphologically similar to C. himalayicus from which it differs in bearing a distinct ventrolateral fold and 6–8 basal lamellae on digit IV of pes. Genetically, the new species is sister to the Indian lineage of the “peguensis” group containing C. bhupathyi and C. gubernatoris. The Indian lineage of the “peguensis” group diverged from its Burmese relatives during the mid-Oligocene likely followed by the beginning of the Himalayan uplift, highlighting the role of the Himalayas in the diversification of biota.

Himalayan orogeny and monsoon intensification explain species diversification in an endemic ginger (Hedychium: Zingiberaceae) from the Indo-Malayan Realm

The Indo-Malayan Realm is a biogeographic realm that extends from the Indian Subcontinent to the islands of Southeast Asia (Malay Archipelago). Despite being megadiverse, evolutionary hypotheses explaining taxonomic diversity in this region have been rare. Here, we investigate the role of geoclimatic events such as Himalayan orogeny and monsoon intensification in the diversification of the ginger-lilies (Hedychium J.Koenig: Zingiberaceae). We first built a comprehensive, time-calibrated phylogeny of Hedychium with 75% taxonomic and geographic sampling. We found that Hedychium is a very young lineage that originated in Northern Indo-Burma, in the Late Miocene (c. 10.6 Ma). This was followed by a late Neogene and early Quaternary diversification, with multiple dispersal events to Southern Indo-Burma, Himalayas, Peninsular India, and the Malay Archipelago. The most speciose clade IV i.e., the predominantly Indo-Burmese clade also showed a higher diversification rate, suggesting its recent rapid radiation. Our divergence dating and GeoHiSSE results demonstrate that the diversification of Hedychium was shaped by both the intensifications in the Himalayan uplift as well as the Asian monsoon. Ancestral character-state reconstructions identified the occurrence of vegetative dormancy in both clades I and II, whereas the strictly epiphytic growth behavior, island dwarfism, lack of dormancy, and a distinct environmental niche were observed only in the predominantly island clade i.e., clade III. Finally, we show that the occurrence of epiphytism in clade III corresponds with submergence due to sea-level changes, suggesting it to be an adaptive trait. Our study highlights the role of recent geoclimatic events and environmental factors in the diversification of plants within the Indo-Malayan Realm and the need for collaborative work to understand biogeographic patterns within this understudied region. This study opens new perspectives for future biogeographic studies in this region and provides a framework to explain the taxonomic hyperdiversity of the Indo-Malayan Realm.

Formation of overpressure system and its relationship with the distribution of large gas fields in typical foreland basins in central and western China

Based on the data of measured formation pressure, drilling fluid density of key exploration wells and calculated pressure by well logging, combined with the analysis of natural gas geological conditions, the characteristics and formation mechanisms of formation fluid overpressure systems in different foreland basins and the relationship between overpressure systems and large-scale gas accumulation are discussed. (1) The formation mechanisms of formation overpressure in different foreland basins are different. The formation mechanism of overpressure in the Kuqa foreland basin is mainly the overpressure sealing of plastic salt gypsum layer and hydrocarbon generation pressurization in deep–ultra-deep layers, that in the southern Junggar foreland basin is mainly hydrocarbon generation pressurization and under-compaction sealing, and that in the western Sichuan foreland basin is mainly hydrocarbon generation pressurization and paleo-fluid overpressure residual. (2) There are three common characteristics in foreland basins, i.e. superimposed development of multi-type overpressure and multi-layer overpressure, strong–extremely strong overpressure developed in a closed foreland thrust belt, and strong–extremely strong overpressure developed in a deep foreland uplift area. (3) There are four regional overpressure sealing and storage mechanisms, which play an important role in controlling large gas fields, such as the overpressure of plastic salt gypsum layer, the overpressure formed by hydrocarbon generation pressurization, the residual overpressure after Himalayan uplift and denudation, and the under-compaction overpressure. (4) Regional overpressure is an important guarantee for forming large gas fields, the sufficient gas source, large-scale reservoir and trap development in overpressure system are the basic conditions for forming large gas fields, and the overpressure system is conducive to forming deep to ultra-deep large gas fields.

Paleoenvironmental evolution of South Asia and its link to Himalayan uplift and climatic change since the late Eocene

Reconstructing the Cenozoic sedimentary history of the Bay of Bengal (BoB) is significant for understanding the evolutionary history of South Asian river systems and the links between river development, tectonic deformation and global climate change. Here, we present the first long-term clay mineral record combined with Sr-Nd isotopic compositions from a 200-m-long sediment core from Ocean Drilling Program (ODP) Site 758 in the southern BoB to establish past variations in sediment sources and river evolution that have occurred since the late Eocene. Provenance analysis suggests that the contribution of the Himalayan source materials from the Irrawaddy and Brahmaputra Rivers to the study site became more important and stable since 22 Ma and 8 Ma, respectively. This new evidence indicates that the Brahmaputra and Irrawaddy Rivers were possibly initiated in the early Miocene (~22 Ma). Considering the timing of major tectonic and climatic evolution in South Asia, we conclude that the two phases of tectonic uplift of the Himalayan orogen that occurred in the early and late Miocene were the primary controls on river development in South Asia and provenance changes in the southern BoB. Global cooling and Indian drying after the late Miocene could also have strengthened Himalayan erosion and contributed more illite and chlorite to the South Asian margin.

Pressure–temperature–time–composition (P–T–t–x) of paleo–fluid in Permian organic–rich shale of Lower Yangtze Platform, China: Insights from fluid inclusions in fracture cements

Recently, much attention has been paid to Permian shale from the Yangtze Platform because of the high–quality hydrocarbon source rock. This research investigates fracture veins derived from conventional cores of the Permian Leping Formation in the Pingle Depression, Lower Yangtze Platform. Based on petrographic observations, micro–Raman spectroscopy, and fluorescent spectrometry, hybrid CH4–C2H6 gas inclusions, pure CH4 inclusions, dissolved CH4 aqueous inclusions, and different abundant blue-green fluorescence petroleum inclusions were discovered in quartz and calcite. The pressure–temperature–time–composition properties of the CH4–bearing inclusions were obtained by quantitative Raman analysis and thermodynamic models. The pore fluid pressure (59.05–87.78 MPa) calculated from Raman shift of C–H symmetric stretching (v1) band of methane indicates inclusions trapped at close to lithostatic pressures, which can provide a key evidence for understanding the formation and evolution of overpressure. PT entrapment conditions, reconstruction of hydrocarbon generation and simulation of burial history permit to constrain accumulation time sequence of paleo-fluid in shale veins. Blue-green fluorescence with high-mature petroleum fluid trapped in late Cretaceous (~81–71 Ma); hybrid CH4–C2H6 fluid trapped in early Paleogene (~68–61 Ma); and CH4 fluid trapped in Paleogene (~62–51 Ma). Dry gas generation period close to the age of maximum burial depth at early Himalayan uplift period.

Diagnostic analysis of a regional heavy snowfall event over the Tibetan Plateau using NCEP reanalysis data and WRF

Snowstorms frequently occur in spring over the heterogeneous underlying surface of the Tibetan Plateau, causing both economic and societal damage. What the intensity of factors triggering snowstorms remains poorly understood. This study quantitatively diagnoses water vapor, the thermodynamic and dynamic conditions of a large-scale heavy snowfall event over the Tibetan Plateau using reanalysis data. Here we show, a cold vortex, the Southern Branch Trough and a meridional shear line are favorable synoptic systems. The snowfall is characterized by low-layer (− 8.3 × 10−7 g s−1 hPa−1 cm−2) and whole-layer (− 4.5 × 10−4 g s−1 cm−2) moisture convergence, low-level atmospheric convergence and high-level divergence (± 3 × 10−4 s−1), low-level positive vorticity (4.8 × 10−4 s−1) and strong vertical velocity (− 4 Pa s−1). Although the convectively-stable stratification acted to suppress snowfall, the abundant water vapor and strong orographic uplift of Himalayas and the downhill wind speed convergence overcome this to trigger the heavy snowfall event witnessed in March 2017. These diagnostic results are well consistent with those from WRF simulation. Our study acknowledges the importance of WRF in diagnostic analysis, deepens the understanding of evolution mechanisms and provides theoretical references for accurate forecasting of such events over the Tibetan Plateau. It would aid the development of effective strategies for sustainable livestock, and the mitigation and prevention of snow disasters in this region.

Herpetological phylogeographic analyses support a Miocene focal point of Himalayan uplift and biological diversification.

The Himalaya are among the youngest and highest mountains in the world, but the exact timing of their uplift and origins of their biodiversity are still in debate. The Himalayan region is a relatively small area but with exceptional diversity and endemism. One common hypothesis to explain the rich montane diversity is uplift-driven diversification—that orogeny creates conditions favoring rapid in situ speciation of resident lineages. We test this hypothesis in the Himalayan region using amphibians and reptiles, two environmentally sensitive vertebrate groups. In addition, analysis of diversification of the herpetofauna provides an independent source of information to test competing geological hypotheses of Himalayan orogenesis. We conclude that the origins of the Himalayan herpetofauna date to the early Paleocene, but that diversification of most groups was concentrated in the Miocene. There was an increase in both rates and modes of diversification during the early to middle Miocene, together with regional interchange (dispersal) between the Himalaya and adjacent regions. Our analyses support a recently proposed stepwise geological model of Himalayan uplift beginning in the Paleocene, with a subsequent rapid increase of uplifting during the Miocene, finally giving rise to the intensification of the modern South Asian Monsoon.

Flora of the Savanna-like Vegetation in Hot Dry Valleys, Southwestern China with Implications to their Origin and Evolution

Savanna-like vegetation and dry thickets occur in hot dry valleys across southwestern China. Here, the flora and biogeography in hot dry valleys with savanna-like vegetation in SW China are studied. Native seed plants of 3217 species and varieties from 1038 genera in 163 families are recorded from these hot dry valleys. The biogeographical elements with a tropical distribution contribute 57.18%, but the ones with a temperate distribution contribute 36.45% of the total genera of the flora. This implies that the flora in hot dry valleys is of tropical margin nature and has been influenced by temperate elements. Floristic divergence across these hot dry valleys is obvious. The floras in the Yuanjiang and the Nujiang valleys are dominated by tropical elements (with a tropical distribution) (77.26% and 74.49 of the total genera, respectively), but the flora of the Jinshajiang valley is composed of half tropical (47.27%) and half temperate (44.96%) genera. Regarding floristic similarities, the Jinshajiang shows the highest similarity to the Yuanjiang although these river valleys are located a great distance from each other. We hypothesize the geological events in Yunnan could profoundly influence the flora and its divergence of the savanna-like vegetation in these deep, hot dry river valleys. Our results could be well explained from the geological events since the Cenozoic, such as the uplift of Himalayas, the extrusion of Indochina, the river capture of the Jinshajiang separating from the Yuanjiang, and the northward movement of the Burma Plate. Our study could be clues to explore the possible formation of the savanna-like vegetation.

A combined approach of mitochondrial DNA and anchored nuclear phylogenomics sheds light on unrecognized diversity, phylogeny, and historical biogeography of the torrent frogs, genus Amolops (Anura: Ranidae)

The genus Amolops (“torrent frogs”) is one of the most species-rich genera in Ranidae, with 59 recognized species. This genus currently includes six species groups diagnosed mainly by morphology. Several recent molecular studies indicated that the classification of species groups within Amolops remains controversial, and key nodes in the phylogeny have been inadequately resolved. In addition, the diversity of Amolops remains poorly understood, especially for those from incompletely sampled regions. Herein, we investigate species-level diversity within the genus Amolops throughout southern China and Southeast Asia, and infer evolutionary relationships among the species using mtDNA data (16S, COI, and ND2). Molecular analyses indicate nine unnamed species, mostly distributed in the Himalayas. We then utilized anchored hybrid enrichment to generate a dataset representing the major mitochondrial lineages to resolve phylogenetic relationships, biogeography, and pattern of species diversification. Our resulting phylogeny strongly supports the monophyly of four previously identified species groups (the A. ricketti, A. daiyunensis, A. hainanensis, and A. monticola groups), but paraphyly for the A. mantzorum and A. marmoratus groups, as previously defined. We erect one new species group, the A. viridimaculatus group, and recognize Dubois' (1992) subgenus Amo as the A. larutensis species group. Biogeographic analysis suggests that Amolops originated on the Indo-Burma/Thai-Malay Peninsula at the Eocene/Oligocene boundary, and dispersed outward, exemplifying a common pattern observed for the origin of Asian biodiversity. The early divergence within Amolops coincides with the Himalayan uplift and the lateral extrusion of Indochina at the Oligocene/Miocene boundary. Our results show that paleoclimatic and geomorphological events have profoundly influenced the patterns of lineage diversification within Amolops.