Unplanted Soil Research Articles

Rhizosphere priming and effects on mobilization and immobilization of multiple soil nutrients

Living roots and their rhizodeposition play a vital role in mediating soil organic carbon (SOC) decomposition and nutrient mobilization. It is virtually unknown how the rhizosphere effects on soil nutrient mobilization are connected with the rhizosphere priming on SOC decomposition. Here we investigated the rhizosphere effects of six grassland species (four grasses and two legumes) on soil nutrient mobilization and SOC decomposition with and without nitrogen (N) fertilization in a 95-day pot experiment. Plant nutrient acquisition, soil extractable nutrients, and net nutrient mobilization or immobilization were determined to evaluate the rhizosphere effect on soil nutrient dynamics. Primed SOC decomposition was measured as the difference in soil-derived CO2–C between planted and unplanted treatments. Without N fertilization, all species consistently increased net phosphorus (P), sodium (Na), iron (Fe), and copper (Cu) mobilization and most species increased net N, sulfur (S), calcium (Ca), and zinc (Zn) mobilization and net potassium (K), magnesium (Mg), and manganese (Mn) immobilization compared to the unplanted soil. These results suggest that grassland species could induce both positive and negative rhizosphere effects on soil nutrient mobilization with different magnitude. With N fertilization, plant-induced net N mobilization increased, while plant-induced net P and S mobilization decreased. Further, plant biomass, plant N, P, and S acquisition, and plant-induced net N, P, and S mobilization (i.e., net nutrient mobilization in excess of the unplanted control), were positively correlated with primed SOC decomposition across six species, indicating that the mobilization of organically bound nutrients (N, P, and S) was connected with the rhizosphere priming on SOC decomposition. In contrast, plant-induced net nutrient mobilization of base cations and micronutrients was not related to primed SOC decomposition. Overall, our results demonstrate that a substantial portion of nutrient availability stems from rhizosphere processes and is plant species-specific, and that nutrient release of N, P and S are closely connected with rhizosphere priming on SOC decomposition.

The impact of single and combined amendment of elemental sulphur and graphene oxide on soil microbiome and nutrient transformation activities

BackgroundSulphur (S) deficiency has emerged in recent years in European soils due to the decreased occurrence of acid rains. Elemental sulphur (S0) is highly beneficial as a source of S in agriculture, but it must be oxidized to a plant-accessible form. Micro- or nano-formulated S0 may undergo accelerated transformation, as the oxidation rate of S0 indirectly depends on particle size. Graphene oxide (GO) is a 2D-carbon-based nanomaterial with benefits as soil amendment, which could modulate the processes of S0 oxidation. Micro-and nano-sized composites, comprised of S0 and GO, were tested as soil amendments in a pot experiment with unplanted soil to assess their effects on soil microbial biomass, activity, and transformation to sulphates. Fourteen different variants were tested, based on solely added GO, solely added micro- or nano-sized S0 (each in three different doses) and on a combination of all S0 doses with GO. ResultsCompared to unamended soil, nano-S0 and nano-S0+GO increased soil pH(CaCl2). Micro-S0 (at a dose 4 g kg−1) increased soil pH(CaCl2), whereas micro-S0+GO (at a dose 4 g kg−1) decreased soil pH(CaCl2). The total bacterial and ammonium oxidizer microbial abundance decreased due to micro-S0 and nano-S0 amendment, with an indirect dependence on the amended dose. This trend was alleviated by the co-application of GO. Urease activity showed a distinct response to micro-S0+GO (decreased value) and nano-S0+GO amendment (increased value). Arylsulfatase was enhanced by micro-S0+GO, while sulphur reducing bacteria (dsr) increased proliferation due to high micro-S0 and nano-S0, and co-amendment of both with GO. In comparison to nano-S0, the amendment of micro-S0+GO more increased soluble sulphur content more significantly. ConclusionsUnder the conditions of this soil experiment, graphene oxide exhibited a significant effect on the process of sulphur oxidation.

Enzyme stoichiometry reveals microbial nitrogen limitation in stony soils

Resource limitation for soil microorganisms is the crucial factor in nutrient cycling and vegetation development, which are especially important in arid climate. Given that rock fragments strongly impact hydrologic and geochemical processes in arid areas, we hypothesized that microbial resource (C and N) limitation will increase along the rock fragment content (RFC) gradient. We conducted a field experiment in Minjiang river arid valleys with four RFC content (0 %, 25 %, 50 %, and 75 %, V V−1) and four vegetation types (Artemisia vestita, Bauhinia brachycarpa, Sophora davidii, and the soil without plants). Activities of C (β-1,4-glucosidase, BG), N (β-1,4-N-acetyl-glucosaminidase, NAG; L-leucine aminopeptidase, LAP), and P (acid phosphatase, ACP) acquiring enzymes were investigated to assess the limitations by C, N or P. In unplanted soil, the C acquiring enzyme activity decreased by 43 %, but N acquiring enzyme activity increased by 72 % in 75 % RFC than those in rock-free soils (0 % RFC). Increasing RFC reduced C:N and C:P enzymatic ratios, as well as vector length and vector angle (< 45°). Plants increased the activities of C and N acquiring enzymes in soils, as well as C:P and N:P enzyme activities, as well as vector length (by 5.6 %–25 %), but decreased vector angle (by 13 %–21 %). Enzyme stoichiometry was dependent on biotic and abiotic factors, such as soil water content, soil C:N, and total content of phospholipid fatty acids, reflecting microbial biomass content. Increased RFC shifted enzymatic stoichiometry toward lower C but stronger N limitation for microorganisms. Vegetation increased microbial C and N limitation, and impacted the enzymatic activities and stoichiometry depending on shrub functional groups. Consequently, the direct effects of vegetation, nutrient availability and microbial biomass content, as well as indirect effects of soil properties collectively increased microbial resource limitations along the RFC gradient.

Impact of two acquisitive plants on N cycle on different soils: The invasive Fallopia japonica does it and so does the native Dactylis glomerata!

Invasive plants may alter ecological and ecosystem processes, including the N-cycle. The Fallopia species complex is a well-studied invasive species whose N-resource acquisition traits define it as an acquisitive species. However, the study of the impacts of invasive plants on the N-cycle never considers the N-acquisition strategy as a reference for choosing another suitable plant control. The purpose of this study is to assess the impacts of an invasive species (Fallopia japonicaFJ) on the N-cycle and to compare with those caused by a native acquisitive species (Dactylis glomerataDG), all compared to unplanted soils. A four-months mesocosm experiment was conducted by growing FJ and DG on nine different soils and measuring their impacts on N-cycle microbial activities (free-living nitrogen fixation FLNF, denitrification DEA, nitrification NEA), on N-mineral forms and on functional N-cycle gene abundance (nifH, AOA, AOB, nirS, nirK) as well as the total bacterial community gene (rRNA 16S). The nine soils differ in microbial enzymatic activities, N-mineral form concentrations, physico-chemical factors, texture, and gene abundances. Plant effects on FLNF, NEA and DEA are only soil dependent and no effect of invasive status was found. In addition, the native plant DG generally affected microbial parameters over a wider range of soils than the invasive plant. Stronger impacts of the native DG on microbial gene abundances were found compared to the invasive FJ. A stronger effect of the invasive plant was found for the soil NO3− concentration, with a significant decrease under the FJ than under the DG. Under both FJ and DG, NH4+ concentrations were not significantly affected. In conclusion, the invasive status in the ecosystem of the two plants studied cannot be explained through their impacts on microbial enzymatic activities and gene abundances of the soil N-cycle and the soil N mineral pools.

A combined landfarming-phytoremediation method to enhance remediation of mixed persistent contaminants.

Contamination of soil and water with petroleum hydrocarbons and metals can pose a significant threat to the environment and human health. This study aimed to investigate the establishment and growth of tall fescue and agropyron in two petroleum-contaminated soils (soil S1 and soil S2) with previous landfarming treatments, and to assess the phytoremediation potential for heavy metal removal from these polluted soils. The results showed that the presence of petroleum hydrocarbons significantly (P < 0.05) reduced plant growth, but plant development was facilitated in soils with prior landfarming treatments. Urease activity in the rhizosphere of agropyron for soil S1 was about 47% higher than the unplanted control soil. The rhizosphere of agropyron and tall fescue eliminated more than 40% and 20% of total hydrocarbon amounts in soil S1, respectively, compared to the unplanted soil. Moreover, the plants grown in the landfarming treatment exhibited higher concentrations of metals (Fe, Zn, Mn, Cu, and Ni) than the control. Based on the findings, the combination of landfarming and phytoremediation techniques can provide an optimal solution for removing mixed pollutants, including petroleum hydrocarbons and metals, from the environment.

Maize (Zea mays L.) Plants Alter the Fate and Accumulate Nonextractable Residues of Sulfamethoxazole in Farmland Soil.

The fate of sulfonamide antibiotics in farmlands is crucial for food and ecological safety, yet it remains unclear. We used [phenyl-U-14C]-labeled sulfamethoxazole (14C-SMX) to quantitatively investigate the fate of SMX in a soil-maize system for 60 days, based on a six-pool fate model. Formation of nonextractable residues (NERs) was the predominant fate for SMX in unplanted soil, accompanied by minor mineralization. Notably, maize plants significantly increased SMX dissipation (kinetic constant kd = 0.30 day-1 vs 0.17 day-1), while substantially reducing the NER formation (92% vs 58% of initially applied SMX) and accumulating SMX (40%, mostly bound to roots). Significant NERs (maximal 29-42%) were formed via physicochemical entrapment (determined using silylation), which could partially be released and taken up by maize plants. The NERs consisted of a considerable amount of SMX formed via entrapment (1-8%) and alkali-hydrolyzable covalent bonds (2-12%, possibly amide linkage). Six and 10 transformation products were quantified in soil extracts and NERs, respectively, including products of hydroxyl substitution, deamination, and N-acylation, among which N-lactylated SMX was found for the first time. Our findings reveal the composition and instability of SMX-derived NERs in the soil-plant system and underscore the need to study the long-term impacts of reversible NERs.

Innovative approaches: Exploring nano-biochar technology’s impact on soil properties, alachlor retention, and microbial populations

Pesticide contamination and soil degradation stand as critical challenges in the agricultural ecosystem. This study delves into the impact of nano-biochar (NBC) on soil properties, alachlor retention, and microbial populations, exploring concentrations of 1 %, 3 %, and 5 % w w−1 in both planted and unplanted alachlor-contaminated soil. A six-week black bean-pot experiment was conducted in planted soil. The NBC, distinguished by its substantial carbon content and remarkable surface area, pore volume, and diameter, resulted in significant enhancements in soil pH, moisture content (MC), and soil organic carbon (SOC). Over the 6-week period, NBC3% and NBC1 % consistently increased SOC content, while NBC5% displayed a declining trend after the 4th week. The application of NBC led to a remarkable acceleration in alachlor reduction, achieving efficiencies exceeding 77 % in unplanted soils and reaching an impressive 97.3 % in planted soils. The reduction dynamics, modeled by a first-order equation, revealed notably shorter half-lives of alachlor in NBC-treated soils compared to controls. Abundance in total plate count (TPC), phosphate-solubilizing bacteria (PSB), and nitrogen-fixing bacteria (NFB) increased with NBC1 % and NBC3 %, although NBC5 % showed a decline after the 2nd week. The findings suggest that NBC1 % and NBC3 % offer optimal outcomes for desired soil improvements, enhanced microbial activity, and effective soil pesticide removal.

A comparative evaluation of biochar and Paenarthrobacter sp. AT5 for reducing atrazine risks to soybeans and bacterial communities in black soil

Application of biochar and inoculation with specific microbial strains offer promising approaches for addressing atrazine contamination in agricultural soils. However, determining the optimal method necessitates a comprehensive understanding of their effects under similar conditions. This study aimed to evaluate the effectiveness of biochar and Paenarthrobacter sp. AT5, a bacterial strain known for its ability to degrade atrazine, in reducing atrazine-related risks to soybean crops and influencing bacterial communities. Both biochar and strain AT5 significantly improved atrazine degradation in both planted and unplanted soils, with the most substantial reduction observed in soils treated with strain AT5. Furthermore, bioaugmentation with strain AT5 outperformed biochar in enhancing soybean growth, photosynthetic pigments, and antioxidant defenses. While biochar promoted higher soil bacterial diversity compared to strain AT5, the latter selectively enriched specific bacterial populations. Additionally, soil inoculated with strain AT5 displayed a notable increase in the abundance of key genes associated with atrazine degradation (trzN, atzB, and atzC), surpassing the effects observed with biochar addition, thus highlighting its effectiveness in mitigating atrazine risks in soil.

Rhizosphere priming promotes plant nitrogen acquisition by microbial necromass recycling.

Nitrogen availability in the rhizosphere relies on root-microorganism interactions, where root exudates trigger soil organic matter (SOM) decomposition through the rhizosphere priming effect (RPE). Though microbial necromass contribute significantly to organically bound soil nitrogen (N), the role of RPEs in regulating necromass recycling and plant nitrogen acquisition has received limited attention. We used 15N natural abundance as a proxy for necromass-N since necromass is enriched in 15N compared to other soil-N forms. We combined studies using the same experimental design for continuous 13CO2 labelling of various plant species and the same soil type, but considering top- and subsoil. RPE were quantified as difference in SOM-decomposition between planted and unplanted soils. Results showed higher plant N uptake as RPEs increased. The positive relationship between 15N-enrichment of shoots and roots and RPEs indicated an enhanced necromass-N turnover by RPE. Moreover, our data revealed that RPEs were saturated with increasing carbon (C) input via rhizodeposition in topsoil. In subsoil, RPEs increased linearly within a small range of C input indicating a strong effect of root-released C on decomposition rates in deeper soil horizons. Overall, this study confirmed the functional importance of rhizosphere C input for plant N acquisition through enhanced necromass turnover by RPEs.

Effect of wheat crops on the persistence and attenuation of antibiotic resistance genes in soil after swine wastewater application

Swine wastewater (SW) application introduces antibiotic resistance genes (ARGs) into farmland soils. However, ARG attenuation in SW-fertigated soils, especially those influenced by staple crops and soil type, remains unclear. This study investigated twelve soil ARGs and one mobile genetic element (MGE) in sandy loam, loam, and silt loam soils before and after SW application in wheat-planted and unplanted soils. The results revealed an immediate increase in the abundance of ARGs in soil by two orders of magnitude above background levels following SW application. After SW application, the soil total ARG abundance was attenuated, reaching background levels at 54 days; However, more individual ARGs were detected above the detection limit than pre-application. Among the 13 genes, acc(6′)-lb, tetM, and tetO tended to persist in the soil during wheat harvest. ARG half-lives were up to four times longer in wheat-planted soils than in bare soils. Wheat planting decreased the persistence of acc(6′)-lb, ermB, ermF, and intI2 but increased the persistence of others such as sul1 and sul2. Soil type had no significant impact on ARG and MGE fates. Our findings emphasize the need for strategic SW application and the consideration of crop cultivation effects to mitigate ARG accumulation in farmland soils.

Assessing the impact of Chlorantraniliprole (CAP) pesticide stress on oilseed rape (Brassia campestris L.): Residue dynamics, enzyme activities, and metabolite profiling

This study investigates the effects of chlorantraniliprole (CAP) pesticide stress on oilseed rape through comprehensive pot experiments. Assessing CAP residue variations in soil and oilseed rape (Brassia campestris L.), enzyme activities (POD, CPR, GST), and differential metabolites, we unveil significant findings. The average CAP residue levels were 18.38–13.70 mg/kg in unplanted soil, 9.94–6.30 mg/kg in planted soil, and 0–4.18 mg/kg in oilseed rape samples, respectively. Soil microbial influences and systemic pesticide translocation into oilseed rape contribute to CAP residue variations. Under the influence of CAP stress, oilseed rape displays escalated enzyme activities (POD, CPR, GST) and manifests 57 differential metabolites. Among these, 32 demonstrate considerable downregulation, mainly impacting amino acids and phenolic compounds, while 25 exhibit noteworthy overexpression, primarily affecting flavonoid compounds. This impact extends to 24 metabolic pathways, notably influencing amide biosynthesis, as well as arginine and proline metabolism. These findings underscore the discernible effects of CAP pesticide stress on oilseed rape.

Differential effects of tree species identity on rhizospheric bacterial and fungal community richness and composition across multiple trace element-contaminated sites

Soil microbial communities play a key role in plant nutrition and stress tolerance. This is particularly true in sites contaminated by trace metals, which often have low fertility and stressful conditions for woody plants in particular. However, we have limited knowledge of the abiotic and biotic factors affecting the richness and composition of microbial communities inhabiting the rhizosphere of plants in contaminated sites. Using high-throughput amplicon sequencing, we studied the rhizospheric bacterial and fungal community structures of 14 woody plant families planted in three contrasting sites contaminated by metals (Pb, Cd, Zn, Mn, Fe, S). The rhizospheric bacterial communities in the given sites showed no significant difference between the various woody species but did differ significantly between sites. The Proteobacteria phylum was dominant, accounting for over 25 % of the overall relative abundance, followed by Actinobacteria, Bacteroidetes and Gemmatimonadetes. Site was also the main driver of fungal community composition, yet unlike bacteria, tree species identity significantly affected fungal communities. The Betulaceae, Salicaceae and Fagaceae families had a high proportion of Basidiomycota, particularly ectomycorrhizal fungi, and the lowest diversity and richness. The other tree families and the unplanted soil harboured a greater abundance of Ascomycota and Mucoromycota. Consequently, for both bacteria and fungi, the site effect significantly impacted their community richness and composition, while the influence of plants on the richness and composition of rhizospheric microbial communities stayed consistent across sites and was dependent on the microbial kingdom. Finally, we highlighted the importance of considering this contrasting response of plant rhizospheric microbial communities in relation to their host identity, particularly to improve assisted revegetation efforts at contaminated sites.

Impact of Biochar Applications on Tropical Soils under Different Land-use Regimes

The application of biochar to agricultural soils can either be beneficial or detrimental, as well as no clear effect to soils and crops. Therefore, the aim of our study was to investigate the effects of biochar addition on soil chemical and biological properties and nutrient leaching in three tropical soils with different types of land-use (forest, non-intensive and intensive farming). The soils were amended with and without 2% coconut shell (CS) and rice husk (RH) biochars by weight and incubated for up to 360 days. To assess the impact of biochar on soil leaching, 27 unplanted soil columns from the same types of land-use were also amended with and without 2% CS and RH biochars by weight. Five leaching experiments were conducted by passing through 100 ml of deionised water via each of the glass columns containing soil. The biochar addition significantly increased (P&amp;lt;0.05) the soil pH and total carbon, but had a marginal effect on CEC and had a limited effect on microbial activity. Biochar treatments reduced ammonium leaching in the forest soil, but had no clear effect on the other two soils. Our data showed that biochar application at a lower rate can ameliorate soil acidic conditions, enhance carbon sequestration and adsorb ammonium ion. However, the success depends on soil and biochar properties and land-use. The biochar samples studied have a limited capacity to reduce nitrate and phosphate leaching due to high biochar phosphate content.

Biological denitrification inhibition (BDI) on nine contrasting soils: An unexpected link with the initial soil denitrifying community

Denitrification is considered the major pathway leading to soil gaseous (N) losses, affecting N availability for plants and consequently plant productivity. Biological denitrification inhibition (BDI) in Fallopia spp., a plant species complex with a high level of growth and competitiveness for mineral N, acts through procyanidin production. However, the soil factors governing BDI development are still unknown. Through a mesocosm experiment using two treatments – soil planted with Fallopia japonica and unplanted–, nine biologically and physically contrasting soils were studied with the aim to ascertain how each can affect BDI development. Microbial enzyme activities (respiration - SIR, denitrification - DEA), denitrifying functional gene abundance (nirK, nirS), total bacterial community abundance (rRNA 16S) and soil physicochemical parameters (N mineral forms, soil texture, moisture, pH) were measured before and after plant growth, and the DEA:SIR ratio was used as a BDI proxy. The DEA:SIR ratio decreased for six soils. BDI development is related to a small number of soil factors, mainly initial soil moisture and ammonium concentration, and unexpectedly, with the initial abundance of nirK(in), nirS(in) and rRNA 16S(in). The intensity of this decrease is positively correlated to the level of DEA in unplanted soil: the higher the DEA in unplanted soil, the more intense the BDI under F. japonica. The procyanidin concentration of the F. japonica belowground system was positively correlated to BDI intensity. These results suggest that a procyanidin assay from the plant belowground system could be a new proxy for measuring BDI intensity. Interestingly, this research shows that BDI is not systematic, and that few (a)biotic soil parameters influence its development. More importantly, this research is the first to highlight that biotic factors are relevant in explaining BDI. This paper also presents new perspectives on plant-microorganism interactions in terms of plant awareness of the soil microbial community.

Root litter decomposition is suppressed in species mixtures and in the presence of living roots.

Plant species diversity and identity can significantly modify litter decomposition, but the underlying mechanisms remain elusive, particularly for root litter. Here, we aimed to disentangle the mechanisms by which plant species diversity alters root litter decomposition. We hypothesised that (1) interactions between species in mixed communities result in litter that decomposes faster than litter produced in monocultures; (2) litter decomposition is accelerated in the presence of living plants, especially when the litter and living plant identities are matched (known as home-field advantage).Monocultures and a mixture of four common grassland species were established to obtain individual litter and a 'natural' root litter mixture. An 'artificial' mixed litter was created using litter from monocultures, mixed in the same proportions as the species composition in the natural litter mixtures based on qPCR measurements. These six root litter types were incubated in four monocultures, a four-species mixture and an unplanted soil.Root decomposition was strongly affected by root litter identity and the presence, but not diversity, of living roots. Mixed-species litter decomposed slower than expected based on the decomposition of single-species litters. In addition, the presence of living roots suppressed decomposition independent of the match between litter and living plant identities. Decomposition was not significantly different between the 'natural' and 'artificial' root litter mixtures, indicating that root-root interactions in species mixtures did not affect root chemical quality. Synthesis. Suppressed decomposition in the presence of living roots indicates that interactions between microbial communities associated with living roots and root litter control root litter decomposition. As we found no support for the importance of home-field advantage or interspecific root interactions in modifying decomposition, suppressed decomposition of mixed-species litter seems to be primarily driven by chemical rather than biotic interactions.

Microbial communities in paddy soils: differences in abundance and functionality between rhizosphere and pore water, influence of different soil organic carbon, sulfate fertilization, and cultivation time, and contribution to arsenic mobility and speciation.

Abiotic factors and rhizosphere microbial populations influence arsenic accumulation in rice grains. Despite mineral and organic surfaces are keystones in element cycling, localization of specific microbial reactions in the root/soil/pore water system is still unclear. Here, we tested if original unplanted soil, rhizosphere soil, and pore water represented distinct ecological microniches for arsenic-, sulfur- and iron-cycling microorganisms and compared the influence of relevant factors such as soil type, sulfate fertilization, and cultivation time. In rice open-air-mesocosms with two paddy soils (2.0% and 4.7% organic carbon), Illumina 16S rRNA gene sequencing demonstrated little significant effects of cultivation time and sulfate fertilization that decreased Archaea-driven microbial networks and incremented sulfate reducing and sulfur oxidizing bacteria. Different compartments, characterized by different bacterial and archaeal compositions, had the strongest effect with higher microbial abundances, bacterial biodiversity and interconnections in the rhizosphere versus pore water. Within each compartment, a significant soil type effect was observed. Higher percentage contributions of rhizosphere dissimilatory arsenate- and iron-reducing, arsenite-oxidizing, and, surprisingly, dissimilatory sulfate-reducing bacteria as well as pore water iron-oxidizing bacteria in the lower organic carbon soil supported previous chemistry-based interpretations of a more active S-cycling, a higher percentage of thioarsenates, and lower arsenic mobility by sorption to mixed Fe(II)Fe(III)-minerals in this soil.

Rhizospheric Lactobacillus spp. contribute to the high Cd-accumulating characteristics of Phytolacca spp. in acidic Cd-contaminated soil

Screening high Cd-accumulating plants and understanding the interactions between plants, rhizospheric microbes and Cd are important in developing microbe-assisted phytoremediation techniques for Cd-contaminated soils. In this study, the Cd tolerance and accumulation characteristics of Phytolacca americana L., P. icosandra L. and P. polyandra Batalin growing in acidic Cd-contaminated soil were compared to evaluate their phytoremediation potential. According to Cd concentrations (root: 8.26–37.09 mg kg−1, shoot: 2.80–9.26 mg kg−1), bioconcentration factors (BCFs) and translocation factors (TFs), the three Phytolacca species exhibited high Cd-accumulation capacities, ranked in the following order: P. icosandra (root BCF: 1.25, shoot BCF: 0.31, TF: 0.25) > P. polyandra (root BCF: 0.68, shoot BCF: 0.26, TF: 0.44) > P. americana (root BCF: 0.28, shoot BCF: 0.09, TF: 0.38). Phytolacca icosandra and P. polyandra can thus be considered as two new Cd accumulators for phytoremediation. Soil pH, available Cd (ACd) concentration and certain bacterial taxa (e.g. Lactobacillus, Helicobacter, Alistipes, Desulfovibrio and Mucispirillum) were differentially altered in the rhizospheres of the three Phytolacca species in comparison to unplanted soil. Correlation analysis showed that there were significant interactions between rhizospheric ACd concentration, pH and Lactobacillus bacteria (L. murinus, L. gasseri and L. reuteri), which affected Cd uptake by Phytolacca plants. The mono- and co-inoculation of L. murinus strain D51883, L. gasseri strain D51533 and L. reuteri strain D24591 in the rhizosphere of P. icosandra altered the rhizospheric pH and ACd concentrations, in addition to increasing the shoot Cd contents by 31.9%–44.6%. These results suggest that recruitment of rhizospheric Lactobacillus spp. by Phytolacca plants contributes to their high Cd-accumulating characteristics. This study provides novel insights into understanding the interactions between plants, rhizobacteria and heavy metals.

Rhizosphere processes by the nickel hyperaccumulator Odontarrhena chalcidica suggest Ni mobilization.

Plant Ni uptake in aboveground biomass exceeding concentrations of 1000μgg-1 in dry weight is defined as Ni hyperaccumulation. Whether hyperaccumulators are capable of mobilizing larger Ni pools than non-accumulators is still debated and rhizosphere processes are still largely unknown. The aim of this study was to investigate rhizosphere processes and possible Ni mobilization by the Ni hyperaccumulator Odontarrhena chalcidica and to test Ni uptake in relation to a soil Ni gradient. The Ni hyperaccumulator O. chalcidica was grown in a pot experiment on six soils showing a pseudo-total Ni and labile (DTPA-extractable) Ni gradient and on an additional soil showing high pseudo-total but low labile Ni. Soil pore water was sampled to monitor changes in soil solution ionome, pH, and dissolved organic carbon (DOC) along the experiment. Results showed that Ni and Fe concentrations, pH as well as DOC concentrations in pore water were significantly increased by O. chalcidica compared to unplanted soils. A positive correlation between Ni in shoots and pseudo-total concentrations and pH in soil was observed, although plant Ni concentrations did not clearly show the same linear pattern with soil available Ni. This study shows a clear root-induced Ni and Fe mobilization in the rhizosphere of O. chalcidica and suggests a rhizosphere mechanism based on soil alkalinization and exudation of organic ligands. Furthermore, it was demonstrated that soil pH and pseudo-total Ni are better predictors of Ni plant uptake in O. chalcidica than labile soil Ni. The online version contains supplementary material available at 10.1007/s11104-023-06161-w.

Miscanthus x giganteus stress tolerance and phytoremediation capacities in highly diesel contaminated soils

Second generation biofuel crop Miscanthus x giganteus (Mxg) was studied as a candidate for petroleum hydrocarbons (PHs) contaminated soil phytomanagement. The soil was polluted by diesel in wide concentration gradient up to 50 g⋅kg−1 in an ex-situ pot experiment. The contaminated soil/plant interactions were investigated using plant biometric and physiological parameters, soil physico-chemical and microbial community's characteristics. The plant parameters and chlorophyll fluorescence indicators showed an inhibitory effect of diesel contamination; however much lower than expected from previously published results. Moreover, lower PHs concentrations (5 and 10 g⋅kg−1) resulted in positive reinforcement of electron transport as a result of hormesis effect. The soil pH did not change significantly during the vegetation season. The decrease of total organic carbon was significantly lower in planted pots. Soil respiration and dehydrogenases activity increased with the increasing contamination indicating ongoing PHs biodegradation. In addition, microbial biomass estimated by phospholipid fatty acids increased only at higher PHs concentrations. Higher dehydrogenases values were obtained in planted pots compared to unplanted. PHs degradation followed the first-order kinetics and for the middle range of contamination (10–40 g⋅kg−1) significantly lower PHs half-lives were determined in planted than unplanted soil pointing on phytoremediation. Diesel degradation was in range 35–70 % according to pot variant. Results confirmed the potential of Mxg for diesel contaminated soils phytomanagement mainly in PHs concentrations up to 20 g⋅kg−1 where phytoremediation was proved, and biomass yield was reduced only by 29 %.

Enhancing rhizosphere soil water retention in wheat through colonization with endophytic fungus Serendipita indica

Effect of S. indica colonization of wheat (Triticum aestivum) on water retention and physical quality of the rhizosphere soil was investigated in a greenhouse study. Colonized and uncolonized seedlings of four wheat cultivars (i.e., Roshan, Ghods, Pishtaz, and Kavir) were grown in rhizoboxes. Plants were harvested and intact samples were taken from the rhizosphere to measure soil organic carbon (SOC), hot-water soluble carbohydrates (HWSC), and soil water retention curve (SWRC). Water contents at field capacity (θFC) and permanent wilting point (θPWP), and plant available water (PAW) were obtained from the measured SWRC data. The integral energy (EI(PAW)) and integral water storage (WI(PAW)), two alternative indices of soil water availability and physical quality, were computed by integration of SWRCs over the PAW range with respect to water content and matric potential, respectively. Low EI(PAW) and high WI(PAW) indicate improved soil physical quality and better soil water availability to plant. The results showed that the SOC storage and HWSC of the wheat rhizosphere were approximately 146 and 83% greater than those of unplanted soils, respectively. Moreover, compared with the uncolonized counterparts, S. indica colonization significantly increased the SOC and HWSC by 76 and 134%, respectively. The presence of plant roots and S. indica colonization improved soil water retention by increasing SOC and HWSC and subsequently enhancing portion of structural porosity (i.e., pore space between the soil aggregates in the size range of 0.5–500 μm, mainly includingmacropores and mesopores). Despite having the same PAW, colonized soil samples had lower EI(PAW) (≈ 133 J kg−1) compared to uncolonized counterparts (≈ 153 J kg−1). This finding implies that plant roots take up water from the colonized wheat-planted soils easier than from the uncolonized counterparts. Compared to uncolonized samples, an increase of 50% in S1 (Dexter's index of soil physical quality) of the colonized Kavir cultivar [with the lowest root extension, SOC (i.e., 0.97 g kg−1), and HWSC (i.e., 0.059 g kg−1)] showed that S. indica can improve soil physical quality due to greater structural pores. Among the four wheat cultivars, the rhizosphere of Roshan (≈ 1.60 g kg−1) and Ghods (1.61 g kg−1) had the highest SOC values. Higher HWSC (i.e., 0.138 g kg−1) and more extensive root distribution for Roshan, especially upon co-cultivation with S. indica, led to greater contribution of structural pores in water retention in the rhizosphere soil when compared with three other cultivars. To conclude, S. indica colonization not only in the presence of plant roots and by increasing SOC and HWSC improves the physical quality of the rhizosphere soil but also the fungus by itself enhances soil physical quality due to enhancing portion of structural porosity involving in water transition and storage.