Nowadays, electricity usage in aircraft has increased due to the increasing gas emission problem. This increase has created the need to store electrical energy and accelerated the trend towards batteries. Since energy storage in batteries occurs as a result of chemical reactions, problems may occur that will damage the battery group or the entire system. These problems are caused by high current, voltage and temperature, which affect the reaction rate during battery charging/discharging. A Battery Management System (BMS) is needed to prevent problems and to use the required electrical energy safely. In this study, it is aimed to meet the energy needs of the system in a controlled manner by disabling only the damaged cell in case of problems that may occur in the cells in the battery. For this purpose, a model of an Unmanned Aerial Vehicle (UAV) system was created by adding a BMS block to each cell to control the battery cells. The BYS model was realized based on the cell temperature, the SoC value of the cell and the output voltage values of the cell. The UAV system was modeled using MATLAB/Simulink software. Thanks to the proposed BMS, in case of a problem that may occur in any cell in the battery, that cell is disabled and the required energy is met through the remaining cells. It is observed from the results obtained that when the cell parameters become normal, it continues to feed the system again.