The contribution of atomic nitrogen is fairly possible in plasma-assisted catalytic synthesis of ammonia since it has high adsorption probabilities on solid surfaces. On the other hand, recently, the contribution of vibrational excited molecular nitrogen to ammonia synthesis has been discussed. In this work, we compared the fluxes of atomic nitrogen and vibrational excited molecular nitrogen with the rate of plasma-assisted ammonia synthesis. We employed an atmospheric-pressure nitrogen plasma jet, and the spatial afterglow of the plasma jet and a hydrogen flow irradiated the surface of a ruthenium catalyst. The fluxes of atomic nitrogen and vibrational excited molecular nitrogen were measured by two-photon absorption laser-induced fluorescence spectroscopy and laser Raman scattering, respectively. The synthesis rate of ammonia had a positive correlation with the flux of vibrational excited molecular nitrogen, while the variation of the synthesis rate with the gas flow rate was opposite to the flux of atomic nitrogen. The experimental results indicate the contribution of vibrational excited molecular nitrogen to the synthesis of ammonia using the atmospheric-pressure plasma, where the flux of vibrational excited molecular nitrogen is more than four orders of magnitude higher than that of atomic nitrogen.