The polynuclear complex Cu2(naphac)2(OH)2 consists of isolated Cu ladders in which square planar CuO4 and square-pyramidal CuO5 units are linked alternately along the crystalline a direction through their corners, and the resultant two adjacent Cu alternating chains connect each other through edges of the CuO5 units to form a ladder. The temperature dependence of the magnetic susceptibility above 50 K is reproduced by the calculation of the spin-1/2 two-leg honeycomb spin ladder model with almost zero exchange coupling between two legs of ladder. This is explained by the Jahn-Teller elongation of square-pyramidal CuO5 units. The absence of lambda-shaped peak in the specific heat down to 1.9 K suggests the existence of large quantum fluctuations of the spin owing to low-dimensional antiferromagnetic interactions.