Two-dimensional Sum Frequency Generation Research Articles

Lipid Landscapes: Vibrational Spectroscopy for Decoding Membrane Complexity.

Cell membranes are incredibly complex environments containing hundreds of components. Despite substantial advances in the past decade, fundamental questions related to lipid-lipid interactions and heterogeneity persist. This review explores the complexity of lipid membranes, showcasing recent advances in vibrational spectroscopy to characterize the structure, dynamics, and interactions at the membrane interface. We include an overview of modern techniques such as surface-enhanced infrared spectroscopy as a steady-state technique with single-bilayer sensitivity, two-dimensional sum-frequency generation spectroscopy, and two-dimensional infrared spectroscopy to measure time-evolving structures and dynamics with femtosecond time resolution. Furthermore, we discuss the potential of multiscale molecular dynamics (MD) simulations, focusing on recently developed simulation algorithms, which have emerged as a powerful approach to interpret complex spectra. We highlight the ongoing challenges in studying heterogeneous environments in multicomponent membranes via current vibrational spectroscopic techniques and MD simulations. Overall, this review provides an up-to-date comprehensive overview of the powerful combination of vibrational spectroscopy and simulations, which has great potential to illuminate lipid-lipid, lipid-protein, and lipid-water interactions in the intricate conformational landscape of cell membranes.

Distinct Binding of Rhenium Catalysts on Nanostructured and Single-Crystalline TiO2 Surfaces Revealed by Two-Dimensional Sum Frequency Generation Spectroscopy

High surface area TiO2 electrodes are extensively used in photocatalytic solar cells. However, it remains controversial how molecular catalysts interact with the TiO2 surfaces and how the electrodes affect the functionality of catalytic adsorbates. Here, we examine the CO2 reduction catalyst ReI(dcbpy)(CO)3Cl (dcbpy = 4,4′-dicarboxy-2,2′-bipyridine) on TiO2 by probing spectroscopically isolated carbonyl modes that are highly sensitive to the complex electronic structure and solvation environment. Combining interferometric two-dimensional sum frequency generation spectroscopy and ab initio simulations of the spectra, we find distinct spectroscopic and dynamical properties of catalysts bound to single crystals and nanocrystalline surfaces. Different cross-peak patterns resulting from interferences between elements of the fourth-order susceptibility, along with different vibrational relaxation dynamics, reveal distinct vibrational relaxation pathways of the catalysts on different TiO2 surfaces that could be ...

Time-Resolved Sum Frequency Generation Spectroscopy: A Quantitative Comparison Between Intensity and Phase-Resolved Spectroscopy.

Time-resolved and two-dimensional sum frequency generation (TR-SFG and 2D-SFG) spectroscopies are promising tools in the experimental study of molecular dynamics, specifically at interfaces. Most implementations of TR/2D-SFG spectroscopy rely on a pump-probe scheme, where an excitation pulse excites a fraction of interfacial molecules into the first excited state of a specific vibrational mode, and a subsequent SFG probe pair detects the time-dependent changes of the surface vibrational response. In steady state SFG spectroscopy, phase-resolved detection (also known as heterodyne-detection), as opposed to SFG intensity measurements, has been shown to be useful in unraveling the steady-state response of interfacial vibrations. Here, we explore the merits of phase-resolved TR/2D-SFG spectroscopy. This purely theoretical and numerical study reveals that, for a typical response from aqueous interfaces, the intensity 2D-SFG measurements contain the same information content as phase-resolved 2D-SFG measurements. We specifically analyze the frequency-dependence of the bleach lifetime (reflecting vibrational relaxation), and the time-dependent slope of the on-diagonal features observed in a 2D spectra. We show that for different systems, the intensity-based and phase-resolved 2D-SFG measurements provide the same information and are quantitatively very similar. We investigate the effect of different lineshapes, anharmonicity, and nonresonant signal contributions, and show that none of these effects substantially change the conclusion that intensity-based and phase-resolved 2D-SFG measurements provide equivalent information.

Heterogeneous Amyloid β-Sheet Polymorphs Identified on Hydrogen Bond Promoting Surfaces Using 2D SFG Spectroscopy.

Two-dimensional sum-frequency generation spectroscopy (2D SFG) is used to study the structures of the pentapeptide FGAIL on hydrogen bond promoting surfaces. FGAIL is the most amyloidogenic portion of the human islet amyloid polypeptide (hIAPP or amylin). In the presence of a pure gold surface, FGAIL does not form ordered structures. When the gold is coated with a self-assembled monolayer of mercaptobenzoic acid (MBA), 2D SFG spectra reveal features associated with β-sheets. Also observed are cross peaks between the FGAIL peptides and the carboxylic acid groups of the MBA monolayer, indicating that the peptides are in close contact with the surface headgroups. In the second set of samples, FGAIL peptides chemically ligated to the MBA monolayer also exhibited β-sheet features but with a much simpler spectrum. From simulations of the experiments, we conclude that the hydrogen bond promoting surface catalyzes the formation of both parallel and antiparallel β-sheet structures with several different orientations. When ligated, parallel sheets with only a single orientation are the primary structure. Thus, this hydrogen bond promoting surface creates a heterogeneous distribution of polymorph structures, consistent with a concentration effect that allows nucleation of many different amyloid seeding structures. A single well-defined seed favors one polymorph over the others, showing that the concentrating influence of a membrane can be counterbalanced by factors that favor directed fiber growth. These experiments lay the foundation for the measurement and interpretation of β-sheet structures with heterodyne-detected 2D SFG spectroscopy. The results of this model system suggest that a heterogeneous distribution of polymorphs found in nature are an indication of nonselective amyloid aggregation whereas a narrow distribution of polymorph structures is consistent with a specific protein or lipid interaction that directs fiber growth.

Heterogeneous Amyloid β-Sheet Polymorphs Identified on Hydrogen Bond Promoting Surfaces Using 2D SFG Spectroscopy

Two-dimensional sum-frequency generation spectroscopy (2D SFG) is used to study the structures of the pentapeptide FGAIL on hydrogen bond promoting surfaces. FGAIL is the most amyloidogenic portion of the human islet amyloid polypeptide (hIAPP or amylin). In the presence of a pure gold surface, FGAIL does not form ordered structures. When the gold is coated with a self-assembled monolayer of mercaptobenzoic acid (MBA), 2D SFG spectra reveal features associated with β-sheets. Also observed are cross peaks between the FGAIL peptides and the carboxylic acid groups of the MBA monolayer, indicating that the peptides are in close contact with the surface headgroups. In the second set of samples, FGAIL peptides chemically ligated to the MBA monolayer also exhibited β-sheet features but with a much simpler spectrum. From simulations of the experiments, we conclude that the hydrogen bond promoting surface catalyzes the formation of both parallel and antiparallel β-sheet structures with several different orientations. When ligated, parallel sheets with only a single orientation are the primary structure. Thus, this hydrogen bond promoting surface creates a heterogeneous distribution of polymorph structures, consistent with a concentration effect that allows nucleation of many different amyloid seeding structures. A single well-defined seed favors one polymorph over the others, showing that the concentrating influence of a membrane can be counterbalanced by factors that favor directed fiber growth. These experiments lay the foundation for the measurement and interpretation of β-sheet structures with heterodyne-detected 2D SFG spectroscopy. The results of this model system suggest that a heterogeneous distribution of polymorphs found in nature are an indication of nonselective amyloid aggregation whereas a narrow distribution of polymorph structures is consistent with a specific protein or lipid interaction that directs fiber growth.

Water in Contact with a Cationic Lipid Exhibits Bulklike Vibrational Dynamics.

Water in contact with lipids is an important aspect of most biological systems and has been termed "biological water". We used time-resolved infrared spectroscopy to investigate the vibrational dynamics of lipid-bound water molecules, to shed more light on the properties of these important molecules. We studied water in contact with a positively charged lipid monolayer using surface-specific two-dimensional sum frequency generation vibrational spectroscopy with subpicosecond time resolution. The dynamics of the O-D stretch vibration was measured for both pure D2O and isotopically diluted D2O under a monolayer of 1,2-dipalmitoyl-3-trimethylammonium-propane. It was found that the lifetime of the stretch vibration depends on the excitation frequency and that efficient energy transfer occurs between the interfacial water molecules. The spectral diffusion and vibrational relaxation of the stretch vibration were successfully explained with a simple model, taking into account the Förster transfer between stretch vibrations and vibrational relaxation via the bend overtone. These observations are very similar to those made for bulk water and as such lead us to conclude that water at a positively charged lipid interface behaves similarly to bulk water. This contrasts the behavior of water in contact with negative or zwitterionic lipids and can be understood by noting that for cationic lipids the charge-induced alignment of water molecules results in interfacial water molecules with O-D groups pointing toward the bulk.

Vibrational Spectroscopy and Dynamics of Water.

We present an overview of recent static and time-resolved vibrational spectroscopic studies of liquid water from ambient conditions to the supercooled state, as well as of crystalline and amorphous ice forms. The structure and dynamics of the complex hydrogen-bond network formed by water molecules in the bulk and interphases are discussed, as well as the dissipation mechanism of vibrational energy throughout this network. A broad range of water investigations are addressed, from conventional infrared and Raman spectroscopy to femtosecond pump-probe, photon-echo, optical Kerr effect, sum-frequency generation, and two-dimensional infrared spectroscopic studies. Additionally, we discuss novel approaches, such as two-dimensional sum-frequency generation, three-dimensional infrared, and two-dimensional Raman terahertz spectroscopy. By comparison of the complementary aspects probed by various linear and nonlinear spectroscopic techniques, a coherent picture of water dynamics and energetics emerges. Furthermore, we outline future perspectives of vibrational spectroscopy for water researches.

Two Types of Water at the Water-Surfactant Interface Revealed by Time-Resolved Vibrational Spectroscopy.

The surfactant sodium dodecyl sulfate (SDS) is widely used as a detergent for both domestic and industrial applications. It forms a self-assembled monolayer on the surface of water. We report a microscopic model for the interaction between the surfactant and water and between water molecules at the interface, revealed using static and time-resolved two-dimensional sum frequency generation spectroscopy. Two distinct subensembles of water in the presence of this negatively charged SDS surfactant have been identified: those close to the SDS headgroup having fairly isolated O-H groups, i.e., localized O-H stretch vibrations, and those whose O-H stretch vibrations are delocalized, i.e., shared between multiple O-H bonds. The two subensembles are coupled, with subpicosecond energy transfer occurring between them. This is markedly different from O-H bonds at the air-water interface, which are less heterogeneous, and indicates that the water molecules that interact with the surfactant headgroups have hydrogen-bonding properties different from those of water molecules interacting with the other water molecules.

Short-Range Catalyst–Surface Interactions Revealed by Heterodyne Two-Dimensional Sum Frequency Generation Spectroscopy

Heterodyne 2D sum frequency generation spectroscopy is used to study a model CO2 reduction catalyst, Re(diCN-bpy) (CO)3Cl, as a monolayer on a gold surface. We show that short-range interactions with the surface can cause substantial line-shape differences between vibrational bands from the same molecules. We explain this interaction as the result of couplings between CO vibrational modes of the catalyst molecules and the image dipoles on gold surface, which are sensitive to the relative distance between the molecule and the surface. Thus, by analysis of HD 2D SFG line-shape differences and polarization dependences of IR spectra, we can unambiguously determine the ensemble-averaged orientation of the molecules on the surface. The high sensitivity of HD 2D SFG spectra to short-range interactions can be applied to many other adsorbate-substrate interactions and therefore can serve as a unique tool to determine adsorbate orientations on surfaces.

Structural Characterization of Single-Stranded DNA Monolayers Using Two-Dimensional Sum Frequency Generation Spectroscopy

DNA-covered materials are important in technological applications such as biosensors and microarrays, but obtaining structural information on surface-bound biomolecules is experimentally challenging. In this paper, we structurally characterize single-stranded DNA monolayers of poly(thymine) from 10 to 25 bases in length with an emerging surface technique called two-dimensional sum frequency generation (2D SFG) spectroscopy. These experiments are carried out by adding a mid-IR pulse shaper to a femtosecond broad-band SFG spectrometer. Cross peaks and 2D line shapes in the 2D SFG spectra provide information about structure and dynamics. Because the 2D SFG spectra are heterodyne detected, the monolayer spectra can be directly compared to 2D infrared (2D IR) spectra of poly(thymine) in solution, which aids interpretation. We simulate the 2D SFG spectra using DFT calculations and an excitonic Hamiltonian that relates the molecular geometry to the vibrational coupling. Intrabase cross peaks help define the orientation of the bases and interbase cross peaks, created by coupling between bases, and resolves features not observed in 1D SFG spectra that constrain the relative geometries of stacked bases. We present a structure for the poly(T) oligomer that is consistent with the 2D SFG data. These experiments provide insight into the DNA monolayer structure and set precedent for studying complex biomolecules on surfaces with 2D SFG spectroscopy.

Molecular dynamics study of two-dimensional sum frequency generation spectra at vapor/water interface.

Two-dimensional heterodyne-detected vibrational sum frequency generation (2D HD-VSFG) spectra at vapor/water interface were studied by molecular dynamics (MD) simulation with a classical flexible and nonpolarizable model. The present model well describes the spectral diffusion of 2D infrared spectrum of bulk water as well as 2D HD-VSFG at the interface. The effect of isotopic dilution on the 2D HD-VSFG was elucidated by comparing the normal (H2O) water and HOD water. We further performed decomposition analysis of 2D HD-VSFG into the hydrogen-bonding and the dangling (or free) OH vibrations, and thereby disentangled the different spectral responses and spectral diffusion in the 2D HD-VSFG. The present MD simulation demonstrated the role of anharmonic coupling between these modes on the cross peak in the 2D HD-VSFG spectrum.

Two-dimensional sum-frequency generation (2D SFG) spectroscopy: summary of principles and its application to amyloid fiber monolayers.

By adding a mid-infrared pulse shaper to a sum-frequency generation (SFG) spectrometer, we have built a 2D SFG spectrometer capable of measuring spectra analogous to 2D IR spectra but with monolayer sensitivity and SFG selection rules. In this paper, we describe the experimental apparatus and provide an introduction to 2D SFG spectroscopy to help the reader interpret 2D SFG spectra. The main aim of this manuscript is to report 2D SFG spectra of the amyloid forming peptide FGAIL. FGAIL is a critical segment of the human islet amyloid polypeptide (hIAPP or amylin) that aggregates in people with type 2 diabetes. FGAIL is catalyzed into amyloid fibers by many types of surfaces. Here, we study the structure of FGAIL upon deposition onto a gold surface covered with a self-assembled monolayer of methyl-4-mercaptobenzoate (MMB) that produces an ester coating. FGAIL deposited on bare gold does not form ordered layers. The measured 2D SFG spectrum is consistent with amyloid fiber formation, exhibiting both the parallel (a+) and perpendicular (a-) symmetry modes associated with amyloid β-sheets. Cross peaks are observed between the ester stretches of the coating and the FGAIL peptides. Simulations are presented for two possible structures of FGAIL amyloid β-sheets that illustrate the sensitivity of the 2D SFG spectra to structure and orientation. These results provide some of the first molecular insights into surface catalyzed amyloid fiber structure.

Two-Dimensional Sum-Frequency Generation Reveals Structure and Dynamics of a Surface-Bound Peptide

Surface-bound polypeptides and proteins are increasingly used to functionalize inorganic interfaces such as electrodes, but their structural characterization is exceedingly difficult with standard technologies. In this paper, we report the first two-dimensional sum-frequency generation (2D SFG) spectra of a peptide monolayer, which are collected by adding a mid-IR pulse shaper to a standard femtosecond SFG spectrometer. On a gold surface, standard FTIR spectroscopy is inconclusive about the peptide structure because of solvation-induced frequency shifts, but the 2D line shapes, anharmonic shifts, and lifetimes obtained from 2D SFG reveal that the peptide is largely α-helical and upright. Random coil residues are also observed, which do not themselves appear in SFG spectra due to their isotropic structural distribution, but which still absorb infrared light and so can be detected by cross-peaks in 2D SFG spectra. We discuss these results in the context of peptide design. Because of the similar way in which the spectra are collected, these 2D SFG spectra can be directly compared to 2D IR spectra, thereby enabling structural interpretations of surface-bound peptides and biomolecules based on the well-studied structure/2D IR spectra relationships established from soluble proteins.

Simulation of Two-Dimensional Sum-Frequency Generation Response Functions: Application to Amide I in Proteins

We present the implementation of an approach to simulate the two-dimensional sum frequency generation response functions of systems with numerous coupled chromophores using a quantum-classical simulation scheme that was previously applied successfully to simulate two-dimensional infrared spectra. We apply the simulation to the amide I band of a mechanosensitive channel protein. By examining the signal generated from different segments of the protein, we find that the overall signal is impossible to interpret without the aid of simulations due to the interference of the response generated on different segments of the protein. We do not find significant cross-peaks in the spectra, even when the waiting time is increased. The spectra are thus not sensitive to coupling between different structural elements. Despite this, we conclude that two-dimensional sum frequency generation spectroscopy will be a powerful tool to investigate membrane bound proteins.

Extracting Structural Information from the Polarization Dependence of One- and Two-Dimensional Sum Frequency Generation Spectra

We present ways in which pulse sequences and polarizations can be used to extract structural information from one- and two-dimensional vibrational sum frequency generation (2D SFG) spectra. We derive analytic expressions for the polarization dependence of systems containing coupled vibrational modes, and we present simulated spectra to identify the features of different molecular geometries. We discuss several useful polarization combinations for suppressing strong diagonal peaks and emphasizing weaker cross-peaks. We investigate unique capabilities of 2D SFG spectra for obtaining structural information about SFG-inactive modes and for identifying coupled achiral chromophores. This work builds on techniques that have been developed for extracting structural information from 2D IR spectra. This paper discusses how to utilize these concepts in 2D SFG experiments to probe multioscillator systems at interfaces. The sample code for calculating polarization dependence of 1D and 2D SFG spectra is provided in the Supporting Information .

Adding a dimension to the infrared spectra of interfaces using heterodyne detected 2D sum-frequency generation (HD 2D SFG) spectroscopy

In the last ten years, two-dimensional infrared spectroscopy has become an important technique for studying molecular structures and dynamics. We report the implementation of heterodyne detected two-dimensional sum-frequency generation (HD 2D SFG) spectroscopy, which is the analog of 2D infrared (2D IR) spectroscopy, but is selective to noncentrosymmetric systems such as interfaces. We implement the technique using mid-IR pulse shaping, which enables rapid scanning, phase cycling, and automatic phasing. Absorptive spectra are obtained, that have the highest frequency resolution possible, from which we extract the rephasing and nonrephasing signals that are sometimes preferred. Using this technique, we measure the vibrational mode of CO adsorbed on a polycrystalline Pt surface. The 2D spectrum reveals a significant inhomogenous contribution to the spectral line shape, which is quantified by simulations. This observation indicates that the surface conformation and environment of CO molecules is more complicated than the simple "atop" configuration assumed in previous work. Our method can be straightforwardly incorporated into many existing SFG spectrometers. The technique enables one to quantify inhomogeneity, vibrational couplings, spectral diffusion, chemical exchange, and many other properties analogous to 2D IR spectroscopy, but specifically for interfaces.

Investigation of Au electrodeposition from [BMP][TFSA] room-temperature ionic liquid containing K[Au(CN)2] by in situ two-dimensional sum frequency generation spectroscopy

In this paper we report an in situ 2D visible-infrared sum frequency generation (VIS-IR SFG) study of the potentiostatic electrodeposition of gold from a solution containing [Au(CN)2]− in 1-butyl-1-methyl-pyrrolidinium bis(trifluoromethylsulfonyl) amide ([BMP][TFSA]), a room-temperature ionic-liquid (RTIL). We followed the potential-dependent co-adsorption of BMP+ and CN−, released by reduction of the Au(I) complex, in the range –0.8 to −3.0V vs. Au QRE. We found that the pyrrolidinium ring of BMP+ reorients as a function of potential value and interaction mode with coadsorbed CN−. The Stark tuning of CN− shows that this pseudohalide can be adsorbed in two different ways, that can be correlated with the presence of Au(I) reduction intermediates at the dynamic electrodeposition interface.