Tubeworms Research Articles

A design solution for a self-guarding robot based on tube worm behavior

Tubeworms establish benthic habitats in the abyssal zones through the aggregation of extensive clusters of chitinous tubes, embodying sessile, tubicolous organisms that engage in filter feeding. The anterior extremity of these organisms is morphologically adapted into tentacle which are capable of retracting into the organisms body at a remarkable velocity when receiving external stimulation. This high speed relies on fan worms lubricant and strong vertical muscles. This adaptive behavior of tubeworms has served as an inspiration for the Long-term underwater detector robot. Despite the prevailing focus of extant research on the intrinsic characteristics of underwater sensors, such as precision and interactivity, there remains oversight regarding the preservation of high-value and inherently delicate sensors within subaquatic robotic carriers. In response to this lacuna, the paper proposes a novel device of an autonomous robotic entity designed to reflexively retract its sensory apparatus in reaction to environmental stimulation. The solutions presented are designed for long-term underwater robots which are subject to frequent external disturbances. The shell has been designed by means of a multilayer sheath structure of a fan worm and a retraction mechanism has been designed. Solidwork is used to model the robot and apdl is employed to simulate the strength stiffness of key structures. As a result of the modelling and simulation analyses, the possibility and practicality of this self-guarding robot have been determined. It is posited that the robotic apparatus harbors a potential for application in domains such as subaqueous surveillance, bathymetric resource exploration, and aquatic quality assessment. Prospective avenues for further scholarly inquiry encompass an augmentation of the investigation into the locomotive capabilities of the robot, alongside enhancements to its autogenic safeguarding mechanisms. These advancements may help to amplify the reliability of the device within severe and abyssopelagic conditions.

The serpulid tube worm Laqueoserpula reussi (Weinzettl, 1910) from the Upper Cretaceousof the Bohemian Cretaceous Basin – an alleged gastropodwhich has turned out to be a characteristic faunal elementof marine nearshore high-energy environments

The serpulid tube worm Laqueoserpula reussi (Weinzettl, 1910), originally introduced as a gastropod named Burtinella(?) reussi, is described from the Upper Cenomanian and Lower Turonian of the Bohemian Cretaceous Basin. It had usually been confused with other species and genera before 2008. Comparison with specimens from the type locality of the type species of the genus Laqueoserpula Lommerzheim, 1979 confirms the affiliation of the Bohemian species to this genus. The simple prismatic (SP) ultrastructure of the tube wall of L. reussi agrees with an assignment to the tribe Serpulini Rafinesque, 1815. In the Upper Cretaceous, representatives of Laqueoserpula are exclusively found in nearshore deposits, where they are accompanied by a high diverse marine invertebrate fauna. By its compact, large and robust tube forming a spiral and extremely thick tube wall, L. reussi was well-adapted to live in nearshore high energy environments, where its tube could be encrusted by bryozoans, brachiopods and oysters, and infested by hydroids and borers.

The Ballynoe Stratiform Barite Deposit, Silvermines, County Tipperary, Ireland

The Ballynoe barite deposit is a conformable, mineralised horizon of Lower Carboniferous age overlying a diastem and mass faunal extinction demarking the transition from a quiet water environment to one of dynamic sedimentation. The geometry of the barite orebody correlates with the palaeotopography of the footwall, which acted as an important control over the lateral extent, thickness, and nature of the mineralisation. Sedimentary features within the barite horizon suggest that it was precipitated in the form of a cryptocrystalline mud which underwent major diagenetic modification resulting in extensive stylolitisation, recrystallisation, and remobilisation. There is abundant and compelling geological and isotopic evidence for early local exhalation from the presence of a hydrothermal vent fauna consisting of delicately pyritised worm tubes and haematised filaments of apparent microbial origin. The worm tubes are remarkably similar to examples from modern and ancient volcanic-hosted massive sulphide deposits, and the filamentous microfossils have similarities to modern Fe-oxidising bacteria. Strontium in the barite has an 87Sr/86Sr ratio indistinguishable from seawater between 350 and 344 Ma whilst oxygen isotopes from barite and chert suggest a diagenetic origin in equilibrium with such seawater around 60–70 °C. Fluid inclusion studies have shown that, in general, low temperature inclusions are very saline (20%–25%) whilst at higher homogenisation temperatures they are more dilute (9%–12%).

Combined Use of Fatty Acid Profiles and Elemental Fingerprints to Trace the Geographic Origin of Live Baits for Sports Fishing: The Solitary Tube Worm (Diopatra neapolitana, Annelida, Onuphidae) as a Case Study.

Diopatra neapolitana Delle Chiaje, 1841 (Annelida, Onuphidae) is one of the most exploited polychaete species in European waters, particularly in Ria de Aveiro, a coastal lagoon in mainland Portugal, where the overexploitation of this resource has led to a generalized decline of local populations. In an attempt to reduce the impact of harvesting, several management actions were implemented, but illegal poaching still fuels a parallel economy that threatens the sustainable use of this marine resource. The present study evaluated the combination of fatty acid profiles and elemental fingerprints of the whole body and jaws, respectively, of D. neapolitana collected from four harvesting locations within Ria de Aveiro in order to determine if their geographic origin could be correctly assigned post-harvesting. Results showed that both fatty acid profiles and elemental fingerprints differ significantly among locations, discriminating the geographic origin with higher accuracy when combining these two natural barcodes than when employing each individually. The present work can, therefore, contribute to the implementation of an effective management plan for the sustainable use of this marine resource, making it possible to detect if D. neapolitana was sourced from no-take zones and if it was collected from the place of origin claimed by live bait traders.

Archaeichnium haughtoni: a robust burrow lining from the Ediacaran–Cambrian transition of Namibia

AbstractFollowing various assignments to Archaeocyatha, worm tubes, and finally incertae sedis, the enigmatic Ediacaran–Cambrian taxon Archaeichnium haughtoni has in recent years come to represent somewhat of a wastebasket taxon to which the indeterminate tapering tubular forms common across this interval are assigned. This ‘catch‐all’ status has been aided in part by both suboptimal specimen photography and the temporary loss of the holotype after its second redescription in 1978. Recent rediscovery of the A. haughtoni holotype in the collections of the Iziko South African Museum in Cape Town has enabled a much‐needed re‐assessment of this critical and cryptic taxon, with results suggesting that this material from the latest Ediacaran or earliest Cambrian of Namibia is among the earliest fossil record examples of marine worm burrow linings, and the oldest examples of linings robust enough to withstand exhumation and current transport. These traces indicate the emergence of this important animalian ecosystem engineering behaviour closer to the Ediacaran–Cambrian boundary than previously thought.

Fossilized giant sulfide-oxidizing bacteria from the Devonian Hollard Mound seep deposit, Morocco.

The giant sulfide-oxidizing bacteria are particularly prone to preservation in the rock record, and their fossils have been identified in ancient phosphorites, cherts, and carbonates. This study reports putative spherical fossils preserved in the Devonian Hollard Mound hydrocarbon-seep deposit. Based on petrographical, mineralogical, and geochemical evidence the putative microfossils are interpreted as sulfide-oxidizing bacteria similar to the present-day genus Thiomargarita, which is also found at modern hydrocarbon seeps. The morphology, distribution, size, and occurrence of the fossilized cells show a large degree of similarity to their modern counterparts. Some of the spherical fossils adhere to worm tubes analogous to the occurrence of modern Thiomargarita on the tubes of seep-dwelling siboglinid worms. Fluorapatite crystals were identified within the fossilized cell walls, suggesting the intercellular storage of phosphorus analogous to modern Thiomargarita cells. The preservation of large sulfide-oxidizing bacteria was probably linked to changing biogeochemical processes at the Hollard Mound seep or, alternatively, may have been favored by the sulfide-oxidizing bacteria performing nitrate-dependent sulfide oxidation-a process known to induce carbonate precipitation. The presence of sulfide-oxidizing bacteria at a Devonian hydrocarbon seep highlights the similarities of past and present chemosynthesis-based ecosystems and provides valuable insight into the antiquity of biogeochemical processes and element cycling at Phanerozoic seeps.

THE STUDY OF MICROBIAL ASSOCIATIONS HELPS US UNDERSTAND THE LIFESTYLE OF <i>TEREBELLIDES</i> CF. <i>STROEMII</i> (ANNELIDA, TEREBELLIFORMIA, TRICHOBRANCHIDAE) IN THE WHITE SEA

Polychaete annelids are one of the main components of oceanic benthos, but little is known about their microbial symbionts. The purpose of this work is to study the microbiome associated with representatives of Terebellides cf. stroemii and to describe their lifestyle in the White Sea. To do this, the worms and their tubes were examined using light and electron microscopy, and the composition of the microbiome was studied by sequencing the hypervariable V4 regions of the 16S rRNA gene. The tubes of Terebellides cf. stroemii are shown to be loose and, most likely, temporary, whereas the worms dig actively into the ground, yet spending part of their time collecting food from the ground surface with the help of tentacles. Bacteria were found neither in integument cells nor in the intestinal epithelium. Phylogenetic and cluster analyses revealed significant differences in the taxonomic composition of the microbiomes of T. cf. stroemii worms from the soil microbiome and allowed us to determine specific components of the microbiomes of intestines and tentacles, whereas the microbiomes of bottom sediments and worm tubes appeared to be similar. The microbiomes of the tubes are dominated by Pseudomonadota, Desulfobacterota and Bacteroidota. While the intestines are home to Pseudomonadota, Actinomycetota, Bacillota, Cyanobacteriota, Chloroflexota and Planctomycetota, this bacterial community is very different from the microbiomes both of the surrounding sediment and the tentacles. The microbiome of the tentacles of T. cf. stroemii differs significantly from that of the surrounding soil, tube and intestine, as it contains Pseudomonadota, Bacillota and Bacteroidota, in addition to a significant number of representatives of the archaeal superfilium DPANN observed in two samples. Modern technologies for studying microbiomes demonstrate the presence of specific communities of microorganisms associated with the study species, with a combination of morphological and molecular methods being promising for studying the microbiomes associated with marine annelids and their functional relationships with the animals.

Climate change influences global distribution of alien tube worms

Alien tube worms have been introduced outside their original distribution areas via international shipping and have become invasive in these areas. Climate change has been acknowledged to redistribute both native and alien species; however, the effect of climate change on the global distribution of alien tube worms is unknown. This study predicts the global distribution patterns of alien tube worms (Hydroides elegans, Sabella spallanzanii, and Ficopomatus enigmaticus) and projects how climate change influences these patterns using species distribution modelling. Sea surface temperature, salinity, primary productivity, phosphate, nitrate, and current velocity are selected as the predictors. The models predict species occurrences well, with AUC values greater than 0.95. Under the present climate scenario, the occurrence probability of alien tube worms is high (>0.9) within the temperate Atlantic Ocean, Persian Gulf, Sea of Japan, Yellow Sea, Southern China, and Southern Australia. The probability of occurrence is expected to increase across oceans by 2100, suggesting that alien tube worms will be more common in the future. Increases in occurrence probability are also projected at higher latitudes (e.g., Barents Sea) by 2100, indicating poleward shifts of these species. This study highlights the urgency of incorporating climate change into the management of alien invasive species.

Chemolithoautotrophic Organic Matter Contributions to Subterranean Food Webs Dominated by Filter-feeders

Chemolithoautotrophic Organic Matter Contributions to Subterranean Food Webs Dominated by Filter-feeders

Shift in symbiotic lifestyle as the major process shaping the evolution of pea crabs (Decapoda: Brachyura: Pinnotheroidea)

The pea crabs, superfamily Pinnotheroidea, are exceptional among brachyuran crabs in their diverse symbiotic associations involving both inquilinism and protective symbiosis. While this group presents a rare opportunity for evolutionary comparative study of host switching and morphological evolution in marine macroinvertebrates, previous phylogenetic studies have been focused on systematics. Here, we reconstructed the most extensive phylogeny of Pinnotheroidea based on two mitochondrial and six nuclear markers, with the aim of elucidating the host switching pathways and the correlation between symbiotic lifestyles and selected morphological adaptations. Ancestral state reconstruction of host association revealed a monophyletic origin of symbiosis in the form of inquilinism. Subsequent shifts in microhabitat preference for burrows or worm tubes, and the move to protective symbiosis, primarily in the switch to mollusc endosymbiosis, contributed to radiation in Pinnotheridae. Further parallel colonisations of echinoderms and tunicates occurred but did not lead to extensive diversification, except in the Clypeasterophilus + Dissodactylus lineage, which experienced a unique switch to echinoderm ectosymbiosis. The evolution of the third maxillipeds, carapace shape and ambulatory pereiopods suggests a rather strong coupling with the symbiotic lifestyle (whether inquilinism or protective symbiosis). Phenotypic diversity of these characters was higher among species engaged in protective symbiosis, with convergence in form (or function) among those sharing the same host affiliation. Species having different host affiliations or symbiotic lifestyles might also exhibit convergence in the form of the three morphological traits, suggesting a common adaptive value of the specialisations. Pinnotherid crabs overall exhibited a lower trait diversity than the also symbiotic palaemonid shrimps with comparable species diversity. This may plausibly be attributed to differences in potential for morphological modification to serve additional functions among the traits analysed in the two groups, the less frequent host switching and the less diverse host affiliations, and thus a less complicated evolutionary history in pinnotherids.

Shewanella metallivivens sp. nov., a deep-sea hydrothermal vent tube worm endobiont capable of dissimilatory anaerobic metalloid oxyanion reduction.

A polyphasic taxonomic study was carried out on a Gram-stain-negative and rod-shaped strain, ER-Te-42B-LightT, isolated from the tissue of a tube worm, Riftia pachyptila, collected near a deep-sea hydrothermal vent of the Juan de Fuca Ridge in the Pacific Ocean. This bacterium was capable of performing anaerobic respiration using tellurite, tellurate, selenite and orthovanadate as terminal electron acceptors. While facultatively anaerobic, it could aerobically resist tellurite, selenite and orthovanadate up to 2000, 7000 and 10000 µg ml-1, respectively, reducing each oxide to elemental forms. Nearly complete 16S rRNA gene sequence similarity related the strain to Shewanella, with 98.8 and 98.7 % similarity to Shewanella basaltis and Shewanella algicola, respectively. The dominant fatty acids were C16 : 0 and C16 : 1. The major polar lipids were phosphatidylethanolamine and phosphatidylglycerol and MK-7 was the predominant quinone. DNA G+C content was 42.5 mol%. Computation of average nucleotide identity and digital DNA-DNA hybridization values with the closest phylogenetic neighbours of ER-Te-42B-LightT revealed genetic divergence at the species level, which was further substantiated by differences in several physiological characteristics. Based on the obtained results, this bacterium was assigned to the genus Shewanella as a new species with the name Shewanella metallivivens sp. nov., type strain ER-Te-42B-LightT (=VKM B-3580T=DSM 113370T).

"Omics" Techniques Used in Marine Biofouling Studies.

Biofouling is the growth of organisms on wet surfaces. Biofouling includes micro- (bacteria and unicellular algae) and macrofouling (mussels, barnacles, tube worms, bryozoans, etc.) and is a major problem for industries. However, the settlement and growth of some biofouling species, like oysters and corals, can be desirable. Thus, it is important to understand the process of biofouling in detail. Modern "omic" techniques, such as metabolomics, metagenomics, transcriptomics, and proteomics, provide unique opportunities to study biofouling organisms and communities and investigate their metabolites and environmental interactions. In this review, we analyze the recent publications that employ metagenomic, metabolomic, and proteomic techniques for the investigation of biofouling and biofouling organisms. Specific emphasis is given to metagenomics, proteomics and publications using combinations of different "omics" techniques. Finally, this review presents the future outlook for the use of "omics" techniques in marine biofouling studies. Like all trans-disciplinary research, environmental "omics" is in its infancy and will advance rapidly as researchers develop the necessary expertise, theory, and technology.

Future research directions of the model marine tubeworm Hydroides elegans and synthesis of developmental staging of the complete life cycle.

The biofouling marine tube worm, Hydroides elegans, is an indirect developing polychaete with significance as a model organism for questions in developmental biology and the evolution of host-microbe interactions. However, a complete description of the life cycle from fertilization through sexual maturity remains scattered in the literature, and lacks standardization. Here, we present a unified staging scheme synthesizing the major morphological changes that occur during the entire life cycle of the animal. These data represent a complete record of the life cycle, and serve as a foundation for connecting molecular changes with morphology. The present synthesis and associated staging scheme are especially timely as this system gains traction within research communities. Characterizing the Hydroides life cycle is essential for investigating the molecular mechanisms that drive major developmental transitions, like metamorphosis, in response to bacteria.

Life from bad smells


 
 
 
 Focus:
 To understand that hydrogen sulphide indicates that there is life at the bottom of the deep-sea.
 Learning objectives:
 With this activity, we create a nasty smell similar to hydrogen sulphide from rotting organic matter. We use that smell as a foundation for a discussion/lesson on interesting life, animals and food webs from the deep sea floor.
 Key words:
 Deep-sea, hydrogen sulphide, chemosynthesis, nematodes, tube worms, food webs.
 
 
 

A New Hope? Mediterranean Algae Mats Are Thriving With Life

Our oceans are full of life and home to many different species. High species diversity often concentrates in specific areas called “biodiversity hotspots” (e.g., coral reefs). These hotspots develop with the help of a few key engineering species (e.g., corals). In the Mediterranean Sea, well-known biodiversity hotspots are seagrass meadows. Macroalgae beds represent another typical habitat but usually do not provide the same diversity as seagrass meadows. High biodiversity is essential for an ecosystem’s stability and our lives: healthy coastal ecosystems provide food and shelter for fish species and stabilize the seafloor. We investigated a relatively unknown type of red macroalgae and were surprised to find it thriving with marine organisms such as sea stars, anemones, and tube worms. With the latter being an example of an extraordinary group of marine animals, we would like to take this example and show you what we learned about this new hotspot for diversity.

Analysis of the Sabellaria spinulosa Bioconstruction Growth in a Laboratory

Sabellaria spinulosa (Leukhart, 1849) is a suspension feeding polychaeta that lives in tubes consisting of terrigenous particles captured by the worm itself. They form impressive reefs containing millions of worm tubes. In temperate marine areas, under optimal environmental conditions, these structures can become natural breakwaters and can play an active role in sandy beaches’ defense. In this work, we report procedures aimed to analyze the growth of S. spinulosa bioconstructions in laboratory. By collecting biological replicas from a wild reef, this study aimed to identify sedimentological characteristics of sands that induce faster tube growth. During the tank experiments, the grain size and mineralogy of the sand were modified. By employing thin sections and X-ray microtomography analyses, the structures observed and measured during and after the tests were analogous to those naturally formed. The fastest growth was recorded in the presence of bioclastic sands with a grain size between 125 and 350 μm. Defining the physical conditions that induce faster growth is fundamental for the defense of these vulnerable habitats but also the surrounding marine environment. This study also lays the foundations for coastal protection interventions in which bioconstructions grown in the tank could be directly implanted on submerged natural and artificial substrates that are already present in situ.

Remote reef cryptobenthic diversity: Integrating autonomous reef monitoring structures and in situ environmental parameters

Coral reef sessile organisms inhabiting cryptic spaces and cavities of the reef matrix perform vital and varied functional roles but are often understudied in comparison to those on exposed surfaces. Here, we assess the composition of cryptobenthic taxa from three remote tropical reef sites (Central Indian Ocean) alongside a suite of in situ environmental parameters to determine if, or how, significant patterns of diversity are shaped by local abiotic factors. To achieve this, we carried out a point-count analysis of autonomous reef monitoring structure (ARMS) plate images and employed in situ instrumentation to recover long-term (12 months) profiles of flow velocity, wave heights, temperature, dissolved oxygen, and salinity, and short-term (3 weeks) profiles of light and pH. We recovered distinct environmental profiles between sampling sites and observed that ocean-facing reefs experienced frequent but short-lived cooling internal wave events and that these were key in shaping in situ temperature variability. By comparing temperature and wave height profiles recovered using in situ loggers with ex situ models, we discovered that global satellite products either failed to recover site-specific profiles or both over- and underestimated actual in situ conditions. We found that site choice and recruitment plate face (top or bottom) significantly impacted the percentage cover of bryozoans, gastropods, soft and calcified tube worms, as well as crustose coralline algae (CCA) and fleshy red, brown, and green encrusting macroalgae on ARMS. We observed significant correlations between the abundance of bryozoans, CCA, and colonial tunicates with lower mean temperature and higher mean dissolved oxygen profiles observed across sites. Red and brown encrusting macroalgae abundance correlated significantly with medium-to-high flow velocities and wave height profiles, as well as higher pH and dissolved oxygen. This study provides the first insight into cryptobenthic communities in the Chagos Archipelago marine-protected area and adds to our limited understanding of tropical reef sessile communities and their associations with environmental parameters in this region. With climate change accelerating the decline of reef ecosystems, integrating analyses of cryptobenthic organisms and in situ physicochemical factors are needed to understand how reef communities, if any, may withstand the impacts of climate change.

Guts, gut contents, and feeding strategies of Ediacaran animals

The oldest animals appear in the fossil record among Ediacara biota communities. They prelude animal-dominated ecosystems of the Phanerozoic and may hold clues to the appearance of modern animal phyla in the Cambrian explosion. However, little is known about the phylogeny of the Ediacaran organisms and even less about their diet and feeding behavior.1,2,3 An exception is mollusc-like Kimberella, for which a fossilized gut, feeding traces, and even potential coprolites have been found.4,5 By contrast, Ediacaran organic-walled tubes, such as Sabellidites and Calyptrina, are thought to belong to tube worms comparable with modern Siboglinidae that have no gut but gain their nutrition from symbiotic bacteria.6,7 Here, we examine the gut contents of Ediacaran animals using biomarker molecules. We show that 558-million-year (Ma)-old tube worm-like Calyptrina and mollusc-like Kimberella possessed a gut and shared a diet of green algae and bacteria. Despite their ancient age, sterol metabolism within the gut of both organisms was already comparable to extant invertebrates.8Dickinsonia, one of the key Ediacaran animals, show no traces of dietary molecules, indicating a different feeding mode and possible external digestion analogous to modern Placozoa. Lipid biomarkers uncover a range of feeding strategies in Ediacaran communities, highlighting true eumetazoan physiology of some Ediacaran animals.

Short-Lived Aggregations of Filograna/Salmacina Tube Worms in the Gulf of Oman

Dense aggregations of serpulid worms were encountered in the Daymaniyat Islands (Gulf of Oman) from 10 to 20 m depth, over the period January–March, 2021. The species responsible for these aggregations belongs to the Filograna/Salmacina-complex (Annelida: Serpulidae). This species has been present in the area and observed along the Oman coastline, but high-density aggregates like this have not been reported before. The most probable cause of the aggregations, supported by field observations and Aqua-MODIS satellite data, was natural eutrophication with a subsequent algal bloom linked to the local winter monsoon. This observation emphasises the importance of documenting biodiversity and dynamics of reef communities along the Oman coastline.

Impacts of infauna, worm tubes, and shell hash on sediment acoustic variability and deviation from the viscous grain shearing model.

Infauna influence geoacoustic parameters in surficial marine sediments. To investigate these effects, an experiment was conducted in natural sand-silt sediment in the northern Gulf of Mexico. In situ acoustic measurements of sediment sound speed, attenuation, and shear speed were performed, and sediment cores were collected from the upper 20 cm of the seabed. Laboratory measurements of sound speed and attenuation in the cores were conducted, after which the core contents were analyzed for biological and physical properties. Since no model currently accounts for the effects of infauna, a deviation from model predictions is expected. To assess the extent of this, acoustic measurements were compared with the viscous grain shearing model from Buckingham [J. Acoust. Soc. Am. 122, 1486 (2007); J. Acoust. Soc. Am. 148, 962 (2020)], for which depth-dependent profiles of sediment porosity and mean grain size measured from the cores were used as input parameters. Comparison of acoustic results with distributions of infauna, worm tubes, and shell hash suggests biogenic impacts on acoustic variability and model accuracy are important in surficial marine sediments. The presence of infauna and worm tubes were correlated with higher variability in both sound speed and attenuation and greater deviation from the model near the sediment-water interface.