Trunk Curvature Research Articles

Extraction of Arbors from Terrestrial Laser Scanning Data Based on Trunk Axis Fitting

Accurate arbor extraction is an important element of forest surveys. However, the presence of shrubs can interfere with the extraction of arbors. Addressing the issues of low accuracy and weak generalizability in existing Terrestrial Laser Scanning (TLS) arbor point clouds extraction methods, this study proposes a trunk axis fitting (TAF) method for arbor extraction. After separating the point cloud data by upper and lower, slicing, clustering, fitting circles, obtaining the main central axis, filtering by distance, etc. The canopy point clouds are merged with the extracted trunk point clouds to precisely separate arbors and shrubs. The advantage of the TAF method proposed in this study is that it is not affected by point cloud density or the degree of trunk curvature. This study focuses on a natural forest plot in Shangri-La City, Yunnan Province, and a plantation plot in Kunming City, using manually extracted data from a standardized dataset of samples to test the accuracy of the TAF method and validate the feasibility of the proposed method. The results showed that the TAF method proposed in this study has high extraction accuracy. It can effectively avoid the problem of trunk point cloud loss caused by tree growth curvature. The experimental accuracy for both plots reached over 99%. This study can provide certain technical support for arbor parameter extraction and scientific guidance for forest resource investigation and forest management decision-making.

Development of a rapid zebrafish model for lead poisoning research and drugs screening

Lead (Pb) contamination is a worldwide public health threaten. Besides close restraint of lead exposure, it's emergency to discover compounds that could help to cue toxicities caused by lead. Zebrafish embryos and early larvae can serve as valuable screening tools in early pre-clinical phase of drug screening and research. In order to establish a zebrafish lead poisoning model that could be used for drug screening and research, zebrafish embryos at 6 h post-fertilization (hpf) were treated with lead at different concentrations by soaking intermittently, raised in lead work solution at night while in fish water during the day. After treated for 90 h, death and severe trunk curvature were observed on zebrafish in 640 μM group, obvious dysplasia, blood toxicity, excessive reactive oxygen species (ROS), severe neurotoxicity, such as shorter length of peripheral motor neurons, neuronal apoptosis, and axonal injury, and neurobehavior impairment were induced by lead at 80, 160 and 320 μM, similar to phenotypes reported in rodent. Moreover, the mRNA level of genes related to neurodevelopment, memory, and antioxidation were significantly down regulated, and apoptosis-related genes were up regulated, consistent to zebrafish phenotypic change. Finally, zebrafish were intermittently exposed to 80 μM lead solution to establish the lead poisoning model, and the efficacy of a safe chelating agent Meso-2,3-Dimercaptosuccinic acid (DMSA) was tested at a series of concentrations to validate the zebrafish model. The result showed concentration-dependent decrease of lead content in zebrafish in DMSA treated groups compared with model group. The above data fully demonstrated a zebrafish model of lead poisoning suitable for drug screening was successfully developed, which was expected to provide a rapid and economic tools for discovering antidotes of lead and drugs of neuroprotection.

Quantification of functional recovery in a larval zebrafish model of spinal cord injury.

Human spinal cord injury (SCI) is characterized by permanent loss of damaged axons, resulting in chronic disability. In contrast, zebrafish can regenerate axonal projections following central nervous system injury and re-establish synaptic contacts with distant targets; elucidation of the underlying molecular events is an important goal with translational potential for improving outcomes in SCI patients. We generated transgenic zebrafish with GFP-labeled axons and transected their spinal cords at 10 days post-fertilization. Intravital confocal microscopy revealed robust axonal regeneration following the procedure, with abundant axons bridging the transection site by 48h post-injury. In order to analyze neurological function in this model, we developed and validated new open-source software to measure zebrafish lateral trunk curvature during propulsive and turning movements at high temporal resolution. Immediately following spinal cord transection, axial movements were dramatically decreased caudal to the lesion site, but preserved rostral to the injury, suggesting the induction of motor paralysis below the transection level. Over the subsequent 96h, the magnitude of movements caudal to the lesion recovered to baseline, but the rate of change of truncal curvature did not fully recover, suggesting incomplete restoration of caudal strength over this time course. Quantification of both morphological and functional recovery following SCI will be important for the analysis of axonal regeneration and downstream events necessary for restoration of motor function. An extensive array of genetic and pharmacological interventions can be deployed in the larval zebrafish model to investigate the underlying molecular mechanisms.

Cinnamaldehyde causes developmental neurotoxicity in zebrafish via the oxidative stress pathway that is rescued by astaxanthin.

Toxicology studies provide a reliable dose range for the use of compounds. Zebrafish show unique advantages in toxicology research. Cinnamaldehyde (Cin) is one of the main active compounds isolated from Cinnamon trees and other species of the genus Cinnamomum. In this study, we investigated the developmental neurotoxicity of cinnamaldehyde in zebrafish and preliminarily explored its underlying mechanism. Cinnamaldehyde causes developmental neurotoxicity in zebrafish, as evidenced by the damage to ventricular structures, eye malformations, shortened body length, trunk curvature, decreased neuronal fluorescence, and pericardial oedema. Moreover, it can induce abnormal behaviour and gene expression in zebrafish. After treatment with the oxidative stress inhibitor astaxanthin, the behaviour and abnormal gene expression were reversed. All of these data demonstrated that the developmental neurotoxicity of cinnamaldehyde might be attributed to oxidative stress. In addition, this study also confirmed that zebrafish is a reliable model for toxicity studies.

Trunk muscle activity and kinematics during boxing and battle rope exercise in people with motor-complete spinal cord injury

Context Recovery of seated balance is a rehabilitation priority for people with motor-complete spinal cord injury (mcSCI). Previous research has demonstrated that people with mcSCI can voluntarily engage their trunk muscles during different exercise programs that have the potential to improve seated balance control. Boxing and battle rope exercises could offer another opportunity to improve seated balance for people with mcSCI, but it is unknown if this type of exercise engages trunk musculature and challenges seated balance. Objective To describe the movement patterns of people with mcSCI compared to controls by characterizing the muscle activation patterns and kinematics of the trunk and upper-body during boxing and battle rope exercise. Design Cross-sectional study. Participants 4 males with mcSCI between C7-T9, and 4 able-bodied controls. Methods Participants performed different boxing and battle rope exercises while kinematics and electromyography (EMG) from the trunk and arms were recorded. Outcome Measures Trunk EMG amplitude, trunk and arm joint angles, and trunk curvature. Results Boxing and battle ropes elicited higher relative EMG activity in people with mcSCI compared to controls (P < 0.001). Participants with mcSCI had similar upper-limb kinematics during the exercises to controls, but demonstrated reduced trunk rotation and increased trunk curvature. Conclusions These findings suggest that boxing and battle rope can elicit trunk activity in people with mcSCI, though they may adopt increased trunk curvatures. Future research should explore if such exercise programs may improve seated balance in people with mcSCI.

Estimation of breast height diameter and trunk curvature with linear and single-photon LiDARs

Key messageNew technologies can take us towards real precision forestry: the terrestrial single-photon avalanche diode (SPAD) light detection and ranging (LiDAR) has a great potential to outperform conventional linear mode LiDARs in measuring tree parameters at the stand level.ContextPrecision forestry together with new sensor technologies implies Digital Forest Inventories for estimation of volume and quality of trees in a stand.AimsThis study compared commercial LiDAR, new prototype SPAD LiDAR, and manual methods for measuring tree quality attributes, i.e., diameter at breast height (DBH) and trunk curvature in the forest stand.MethodsWe measured 7 Scots pine trees (Pinus sylvestris) with commercial LiDAR (Zeb Horizon by GeoSLAM), prototype SPAD LiDAR, and manual devices. We compared manual measurements to the DBH and curvature values estimated based on LiDAR data. We also scanned a densely branched Picea abies to compare penetrability of the LiDARs and detectability of the obstructed trunk.ResultsThe DBH values deviated 1–3 cm correlating to the specified accuracies of the employed devices, showing close to acceptable results. The curvature values deviated 1–6 cm implying distorted range measurements from the top part of the trunks and inaccurate manual measurement method, leaving space for improvement. The most important finding was that the SPAD LiDAR outperformed conventional LiDAR in detecting tree stem of the densely branched spruce.ConclusionThese results represent preliminary but clear evidence that LiDAR technologies are already close to acceptable level in DBH measurements, but not yet satisfactory for curvature measurements. In addition, terrestrial SPAD LiDAR has a great potential to outperform conventional LiDARs in forest measurements of densely branched trees.

DEVELOPMENTAL TOXICITY OF ARISTOLOCHIC ACID IN DEVELOPING ZEBRAFISH (Danio rerio) EMBRYOS: CARDIOVASCULAR FAILURE AND INHIBITED CAUDAL FIN REGENERATION

The study employed a green fluorescent vascular endothelium transgenic line, Tg (VEGFR2: GFP), to evaluate the effects of aristolochic acid (AA) at various concentrations on cardiovascular and fin imperfections in developing zebrafish embryos. The findings reveal that the intersegmental vessels (ISVs), dorsal longitudinal anastomotic vessels (DLAVs), and fin regeneration in the embryos were attenuated and underdeveloped in comparison to the control at 1, 5, 10, 20, 30, and 40 µM/L concentrations of AA. At 48 hours post-fertilization (hpf), pericardial sac edema, yolk sac edema, and slight trunk curvature were detected in the surviving larvae at 10 and 20 µM/L. These consequences were more pronounced at AA concentrations of 30 and 40 µM/L. A gradual reduction in survival, hatching, heart rate, length, and diameter of ISVs and DLAVs was observed at 10, 20, 30, and 40 µM/L when the embryos were 48 hpf. In addition, the fin redevelopment of the zebrafish embryos was also constrained in the treatment groups. The embryos exhibited heartbeats; however, blood circulation was terminated in response to the additive effect of AA at 10 and 20 µM/L concentrations. Furthermore, at higher AA levels, the embryos did not hatch. Instead, they died. The present study verified that AA has a significant toxic effect on zebrafish embryos. These outcomes may add to the existing knowledge of the possible toxicological impacts of AA and pave the path toward the sustainable development of treatments that promote human health.

Nondestructive Estimation of the Above-Ground Biomass of Multiple Tree Species in Boreal Forests of China Using Terrestrial Laser Scanning

Above-ground biomass (AGB) plays a pivotal role in assessing a forest’s resource dynamics, ecological value, carbon storage, and climate change effects. The traditional methods of AGB measurement are destructive, time consuming and laborious, and an efficient, relatively accurate and non-destructive AGB measurement method will provide an effective supplement for biomass calculation. Based on the real biophysical and morphological structures of trees, this paper adopted a non-destructive method based on terrestrial laser scanning (TLS) point cloud data to estimate the AGBs of multiple common tree species in boreal forests of China, and the effects of differences in bark roughness and trunk curvature on the estimation of the diameter at breast height (DBH) from TLS data were quantitatively analyzed. We optimized the quantitative structure model (QSM) algorithm based on 100 trees of multiple tree species, and then used it to estimate the volume of trees directly from the tree model reconstructed from point cloud data, and to calculate the AGBs of trees by using specific basic wood density values. Our results showed that the total DBH and tree height from the TLS data showed a good consistency with the measured data, since the bias, root mean square error (RMSE) and determination coefficient (R2) of the total DBH were −0.8 cm, 1.2 cm and 0.97, respectively. At the same time, the bias, RMSE and determination coefficient of the tree height were −0.4 m, 1.3 m and 0.90, respectively. The differences of bark roughness and trunk curvature had a small effect on DBH estimation from point cloud data. The AGB estimates from the TLS data showed strong agreement with the reference values, with the RMSE, coefficient of variation of root mean square error (CV(RMSE)), and concordance correlation coefficient (CCC) values of 17.4 kg, 13.6% and 0.97, respectively, indicating that this non-destructive method can accurately estimate tree AGBs and effectively calibrate new allometric biomass models. We believe that the results of this study will benefit forest managers in formulating management measures and accurately calculating the economic and ecological benefits of forests, and should promote the use of non-destructive methods to measure AGB of trees in China.

Hip Screening in Infants Presenting with Asymmetricity of Lower Extremity

Purpose: This study aimed to investigate the clinical features of congenital postural deformities and lower extremity asymmetry with respect to the presence of developmental dysplasia of the hip (DDH) in infants with a discrepancy of the limb length referred for suspected DDH. Materials and Methods: We retrospectively reviewed the medical records and radiographs of 150 infants who visited Korea University Anam Hospital Orthopedic Clinic for suspected DDH between March 2013 and March 2015. Results: There were greater numbers of infants with a shorter lower extremity on the left side (n=86, 57.3%) than the right. Plagiocephaly was present in 62 infants and trunk curvature in 124 infants (82.7%). Pelvic tilting—indirectly assessed by a skewed direction of the external genitalia in female infants—was present in 62 infants (63.3%). None of the 139 infants with normal physical examination of the hip were diagnosed with DDH. Of those 11 infants with abnormal findings from the hip physical examination, a total of 6 infants were diagnosed with DDH. Conclusion: Regardless of the associated findings of congenital postural deformation, all infants diagnosed with DDH had abnormal findings from the physical examination of the hip joint. Thus, we conclude that the hip examination is important as the primary clinical screening in aiding the diagnosis of DDH.

Toxicogenomic Responses of Zebrafish Embryos/Larvae to Tris(1,3-dichloro-2-propyl) Phosphate (TDCPP) Reveal Possible Molecular Mechanisms of Developmental Toxicity

Tris(1,3-dichloro-2-propyl) phosphate (TDCPP) is frequently present in indoor dust and can be detected in human milk. In order to evaluate the effects of TDCPP on vertebrate development, zebrafish embryos/larvae were used as an animal model to examine developmental phenotypes and explore possible mechanisms of toxicity by employing microarrays and iTRAQ labeling quantitative proteomics. The results demonstrated that treatment with TDCPP (3 μM) from 0.75 h postfertilization (hpf) inhibited cell rearrangement at 4 hpf, caused delay in epiboly at 5.7 and 8.5 hpf, and led to abnormal development (e.g., short tail, reduced body size) and lethality between 14 and 45 hpf, which might be related with altered expression of genes regulating embryogenesis. Furthermore, trunk curvature was observed as the main phenotype in 96 hpf zebrafish larvae exposed to 1 or 3 μM TDCPP, possibly by changing somite formation and expression of proteins related to fast muscle and cartilage development. Collectively, our results suggest that exposure to TDCPP causes developmental toxicity in vertebrates and warrant the need for studies to evaluate the potential health risks of TDCPP to developing human embryos/infants/children, due to its frequent presence in indoor dust and potential for human exposure.

Lin9 Is Required for Mitosis and Cell Survival during Early Zebrafish Development

LIN9 has been described as a regulator of G(1)/S and G(2)/M progression of the cell cycle in invertebrates and human cell lines. To elucidate the in vivo function of LIN9 during vertebrate development, we took advantage of the teleost zebrafish (Danio rerio). By means of antisense morpholinos we show here that Lin9-depleted embryonic cells accumulate in mitosis. Flow cytometry and confocal microscopy data demonstrate that the delay in mitotic progression is followed by apoptosis, which strongly manifests in the developing central nervous system. In accordance with these findings, we identified a cohort of Lin9-regulated genes required for different mitotic processes, including mitotic entry, metaphase/anaphase transition, and cytokinesis. Our data establish LIN9 as an essential regulator of mitosis in vertebrate development.

The Gravitropic Response of Poplar Trunks: Key Roles of Prestressed Wood Regulation and the Relative Kinetics of Cambial Growth versus Wood Maturation

In tree trunks, the motor of gravitropism involves radial growth and differentiation of reaction wood (Archer, 1986). The first aim of this study was to quantify the kinematics of gravitropic response in young poplar (Populus nigra x Populus deltoides, 'I4551') by measuring the kinematics of curvature fields along trunks. Three phases were identified, including latency, upward curving, and an anticipative autotropic decurving, which has been overlooked in research on trees. The biological and mechanical bases of these processes were investigated by assessing the biomechanical model of Fournier et al. (1994). Its application at two different time spans of integration made it possible to test hypotheses on maturation, separating the effects of radial growth and cross section size from those of wood prestressing. A significant correlation between trunk curvature and Fournier's model integrated over the growing season was found, but only explained 32% of the total variance. Moreover, over a week's time period, the model failed due to a clear out phasing of the kinetics of radial growth and curvature that the model does not take into account. This demonstrates a key role of the relative kinetics of radial growth and the maturation process during gravitropism. Moreover, the degree of maturation strains appears to differ in the tension woods produced during the upward curving and decurving phases. Cell wall maturation seems to be regulated to achieve control over the degree of prestressing of tension wood, providing effective control of trunk shape.

Metachronal coupling between spinal neuronal networks during locomotor activity in newborn rat

In the present study, we investigate spinal cord neuronal network interactions in the neonatal rat during locomotion. The behavioural and physiological relevance of metachronally propagated locomotor activity were inferred from kinematic, anatomical and in vitro electrophysiological data. Kinematic analysis of freely behaving animals indicated that there is a rhythmic sequential change in trunk curvature during the step cycle. The motoneurons innervating back and tail muscles were identified along the spinal cord using retrograde labelling. Systematic multiple recordings from ventral roots were made to determine the precise intrinsic pattern of coordination in the isolated spinal cord. During locomotor-like activity, rhythmic ventral root motor bursts propagate caudo-rostrally in the sacral and the thoracic spinal cord regions. Plotting the latency as a function of the cycle period revealed that the system adapts the intersegmental latency to the ongoing motor period in order to maintain a constant phase relationship along the spinal axis. The thoracic, lumbar and sacral regions were capable of generating right and left alternating motor bursts when isolated. Longitudinal sections of the spinal cord revealed that both the bilateral antiphase pattern observed for the sacral region with respect to the lumbar segment 2 as well as the intersegmental phase lag were due to cross-cord connections. Together, these results provide physiological evidence that the dynamic changes observed in trunk bending during locomotion are determined by the intrinsic organization of spinal cord networks and their longitudinal and transverse interactions. Similarities between this organization, and that of locomotor pattern generation in more primitive vertebrates, suggest that the circuits responsible for metachronal propagation of motor patterns during locomotion are highly conserved.

Vestibular compensation in guinea pigs given intravenous lidocaine after unilateral labyrinthectomy

Intravenous lidocaine has been reported to alleviate vertigo in Meniere’s disease and suggested as a possible antivertigo agent after unilateral labyrinthectomy in a study of cats. To further evaluate the effects of intravenous lidocaine on the acute phase of postural compensation, we subjected 13 pigmented guinea pigs to unilateral labyrinthectomy. Seven received intravenous lidocaine (4 mg/kg) immediately after labyrinthectomy. The other six served as controls and received an equivalent-volume injection of normal saline solution. Total body curvature, trunk curvature, yaw head tilt, and roll head tilt were measured at frequent intervals for up to 30 hours after surgery. Both groups had immediate difficulties with posturing that gradually improved. The lidocaine group tended to exhibit delayed postural compensation, but this was only statistically significant for roll head tilt. These results do not show improvement in postural compensation from unilateral labyrinthectomy after the administration of intravenous lidocaine. A species-specific effect on the vestibular pathways is suggested, and we conclude that further evaluation of lidocaine and the vestibular system is warranted. (Otolaryngol Head Neck Surg 1999;120:12-6.)

Alpha-Difluoromethylornithine delays behavioral recovery and induces decompensation after unilateral labyrinthectomy.

Biochemical and pharmacologic studies suggest a role for the ornithine decarboxylase-polyamine system as a modulator of behavioral changes during vestibular compensation. alpha-Difluoromethylornithine specifically blocks the rate-limiting step of polyamine biosynthesis. To assess the effects of alpha-difluoromethylornithine on the acute phase of postural compensation, guinea pigs were divided into groups subjected to either unilateral labyrinthectomy only (n = 7), alpha-difluoromethylornithine (500 mg/kg/day) for 4 days before labyrinthectomy (n = 10), equivalent volumes of saline for 4 days before labyrinthectomy (n = 8), and sham operations (n = 5). Yaw head tilt and roll head tilt, trunk curvature, and air-righting reflex were measured at baseline and at regular intervals up to 4 weeks. alpha-Difluoromethylornithine significantly delayed recovery of normal air-righting but had no effect on yaw head tilt, roll head tilt, and trunk curvature. We also evaluated effects of alpha-difluoromethylornithine in compensated guinea pigs. Fully compensated animals from phase 1 were randomly assigned to receive alpha-difluoromethylornithine (500 mg/kg/day) or saline once daily for 4 days. Only 33% of alpha-difluoromethylornithine animals maintained air-righting, compared with 100% of saline-treated animals (p = 0.003). Maximum trunk curvature was greater in the alpha-difluoromethylornithine group (p = 0.02). Thus alpha-difluoromethylornithine not only delayed the time course for postural recovery after unilateral labyrinthectomy, it also transiently disrupted the maintenance of the compensated state.

A kinematic and electromyographic analysis of the development of sitting posture in infants

This study was designed to describe the development of posture control in sitting in response to a natural perturbation. Seven normal infants 2 to 5 months of age were tested at two stages of independent sitting development. Trunk support was removed from infants while sitting erect and the postural responses were videotaped and EMG recorded from the upper trunk extensors, lumbar paraspinals, gluteus maximus, rectus femoris, hamstrings, and abdominals. Kinematic variables (trunk displacement, trunk velocity, trunk curvature) and an EMG variable (pattern of muscle activation) were analyzed with computer programs. Between Stages 1 and 2 of sitting development, anterior trunk displacement and velocity decreased significantly, although the trunk extension curve did not change significantly. Infants had variable muscle responses during Stage 1; however, during Stage 2 EMG analysis revealed less variability and the emergence of postural synergies. Overall, lumbar paraspinals, hamstrings, and quadriceps were the muscles most frequently active during the postural response. Each subject had a preferred synergy, with the most common synergies being a lumbar paraspinal-hamstring synergy and a lumbar paraspinal-quadriceps synergy. These data provide evidence that trunk displacement and trunk velocity decrease in infants develop independent sitting posture, and these variables may be used to measure improvement in sitting control. We suggest that the control of sitting posture is related to the emergence and preferred use of the paraspinal-hamstring and paraspinal-quadriceps synergies.

Dendrogeomorphological analysis of mass movement a technical note on the research method

Dating of mass movement events by examining the course of eccentricity of the annual rings of trees, inclined as a result of these movements, can be a problem in the case of multiple inclined trees showing compound trunk curvature and complex reaction wood. These problems, however, can be solved when sampling of ring width cores is based on accurate analysis of the form of the trunk.

Locomotor recovery after deafferentation of one side of the cat's trunk

To distinguish the effects of a “purely postural” abnormality of the trunk upon phasic limb movements in cats, dorsal roots T5 through T13 were cut extradurally on one side. A profound deficit was seen in posture (trunk curvature, loss of pelvic fixation, fixed limb postures), phasic limb responses (loss of placing, hopping) and in locomotion, (both free and conditioned) which was abolished initially. The basic deficit appeared to be a loss of body-contact-righting, resulting from the imbalanced projection of impulses from the trunk. Locomotor recovery occurred in two stages: (i) recovery of generalized, poorly controlled locomotion and (ii) recovery of accurate locomotion. Postural deficits ameliorated but persisted. During recovery, cats compensated for impaired postural control by improved phasic limb movements, e.g., recovery of accurate locomotion was always preceded by return of tactile placing. The role of limb movements in recovery from trunk deafferentation was tested, after recovery had taken place, by deafferenting the ipsilateral hind limb. The initial deficit in posture reappeared plus a hind limb deficit due to deafferentation. Recompensation followed again in two stages, with increasing activity of descending supra- and propriospinal reflexes, suggesting that a different pathway was responsible for this second recovery. After trunk deafferentation the first stage (generalized movements) of recovery might be mediated by unmasking of latent synapses or denervation supersensitivity. The second stage (accurate movements) may depend on sprouting of hind limb afferents which would act to increase hind limb reflex input and substitute for impaired postural control.