Trophic Traits Research Articles

Diadromy Drives Elevated Rates of Trait Evolution and Ecomorphological Convergence in Clupeiformes (Herring, Shad, and Anchovies).

AbstractMigration can have a profound influence on rates and patterns of phenotypic evolution. Diadromy is the migration between marine and freshwater habitats for feeding and reproduction that can require individuals to travel tens to thousands of kilometers. The high energetic demands of diadromy are predicted to select for ecomorphological traits that maximize swimming and locomotor efficiency. Intraspecific studies have shown repeated instances of divergence among diadromous and nondiadromous populations in locomotor and foraging traits, which suggests that at a macroevolutionary scale diadromous lineages may experience convergent evolution onto one or multiple adaptive optima. We tested for differences in rates and patterns of phenotypic evolution among diadromous and nondiadromous lineages in Clupeiformes, a clade that has evolved diadromy more than 10 times. Our results show that diadromous clupeiforms show convergent evolution for some locomotor traits and faster rates of evolution, which we propose are adaptive responses to the locomotor demands of migration. We also find evidence that diadromous lineages show convergence into multiple regions of multivariate trait space and suggest that these respective trait spaces are associated with differences in migration and trophic ecology. However, not all locomotor traits and no trophic traits show evidence of convergence or elevated rates of evolution associated with diadromy. Our results show that long-distance migration influences the tempo and patterns of phenotypic evolution at macroevolutionary scales, but there is not a single diadromous syndrome.

The Soil Food Web Ontology: Aligning trophic groups, processes, resources, and dietary traits to support food-web research

Although soil ecology has benefited from recent advances in describing the functional and trophic traits of soil organisms, data reuse for large-scale soil food-web reconstructions still faces challenges. These obstacles include: (1) most data on the trophic interactions and feeding behaviour of soil organisms being scattered across disparate repositories, without well-established standard for describing and structuring trophic datasets; (2) the existence of various competing terms, rather than consensus, to delineate feeding-related concepts such as diets, trophic groups, feeding processes, resource types, leading to ambiguities that hinder meaningful data integration from different studies; (3) considerable divergence in the trophic classification of numerous soil organisms, or even the lack of such classifications, leading to discrepancies in the resolution of reconstructed food webs and complicating the reuse and comparison of food-web models within synthetic studies. To address these issues, we introduce the Soil Food Web Ontology, a novel formal conceptual framework designed to foster agreement on the trophic ecology of soil organisms. This ontology represents a collaborative and ongoing endeavour aimed at establishing consensus and formal definitions for the array of concepts relevant to soil trophic ecology. Its primary objective is to enhance the accessibility, interpretation, combination, reuse, and automated processing of trophic data. By harmonising the terminology and fundamental principles of soil trophic ecology, we anticipate that the Soil Food Web Ontology will improve knowledge management within the field. It will help soil ecologists to better harness existing information regarding the feeding behaviours of soil organisms, facilitate more robust trophic classifications, streamline the reconstruction of soil food webs, and ultimately render food-web research more inclusive, reusable and reproducible.

Trophic niche and adaptation in highland lizards: sex has greater influences than species matching.

The plateau environments are typically arid, cool, and high altitude, posing formidable challenges to wildlife survival due to resource scarcity and harsh conditions. Unraveling ecological adaptability in severe conditions requires a deeper understanding of the niche characteristics of plateau species. Trophic niche, which is a comprehensive indicator describing the energy acquisition strategy of animals, remains relatively understudied in plateau species. Here, by combining stable isotopes and morphological data, we quantified the trophic niches of two allopatric lizard species (Phrynocephalus vlangalii and P. erythrurus) that live in the hinterland of the Qinghai-Tibetan Plateau,and explored how their trophic niches correlate with morphological and environmental factors. While both trophic niche and morphological traits were similar between species, noteworthy distinctions were observed between male and female Phrynocephalus lizards. The morphological traits associated with predation (i.e. limb length and head size) and reproduction (i.e. abdomen length), annual mean temperature, and sex played influential roles in shifting trophic niches. These results imply that sexual dimorphism may facilitate inter-sex divergence in resource utilization, leading to trophic niche variations in the highland lizards. Furthermore, extreme environmental stress can constrain interspecific divergence in morphological and trophic traits. Our findings illustrate the dynamic variations of trophic niches in highland lizards, contributing to a more comprehensive understanding of the adaptation strategies employed by lizard species in plateau environments.

Assembly processes and functional diversity of marine protists and their rare biosphere

BackgroundThe mechanisms shaping the rare microbial biosphere and its role in ecosystems remain unclear. We developed an approach to study ecological patterns in the rare biosphere and use it on a vast collection of marine microbiomes, sampled in coastal ecosystems at a regional scale. We study the assembly processes, and the ecological strategies constituting the rare protistan biosphere. Using the phylogeny and morpho-trophic traits of these protists, we also explore their functional potential.ResultsTaxonomic community composition remained stable along rank abundance curves. Conditionally rare taxa, driven by selection processes, and transiently rare taxa, with stochastic distributions, were evidenced along the rank abundance curves of all size-fractions. Specific taxa within the divisions Sagenista, Picozoa, Telonemia, and Choanoflagellida were rare across time and space. The distribution of traits along rank abundance curves outlined a high functional redundancy between rare and abundant protists. Nevertheless, trophic traits illustrated an interplay between the trophic groups of different size-fractions.ConclusionsOur results suggest that rare and abundant protists are evolutionary closely related, most notably due to the high microdiversity found in the rare biosphere. We evidenced a succession of assembly processes and strategies of rarity along rank abundance curves that we hypothesize to be common to most microbiomes at the regional scale. Despite high functional redundancy in the rare protistan biosphere, permanently rare protists were evidenced, and they could play critical functions as bacterivores and decomposers from within the rare biosphere. Finally, changes in the composition of the rare protistan biosphere could be influenced by the trophic regime of aquatic ecosystems. Our work contributes to understanding the role of rare protists in microbiomes.

Vine leaf decomposition: Feeding preferences and effects of physico-chemical traits of litter on life-history traits of the woodlice Armadillidium vulgare Latreille, 1804

Litter decomposition is a key ecosystem process which is dependent on the litter characteristics and diversity, the decomposer community and activity, and the environmental conditions. We assessed vine leaf decomposition by Armadillidium vulgare (Latreille, 1804), a terrestrial isopod widely distributed and naturally present in vineyards. We compared the decomposition of three grape varieties (Chardonnay, Pinot Noir and Sauvignon) with regular laboratory food (Tilia tomentosa (Moench, 1785)) for seven consecutive weeks. Seven traits were measured on the four litters tested in order to define their importance concerning (i) litter mass loss by the action of microorganisms and isopods (ii) the trophic traits (consumption and assimilation) and (iii) life-history traits (survival and growth) of A. vulgare. Thus, the chemical and physical traits (C/N ratio, tannin and fiber content, thickness) known to influence litter palatability and digestibility for decomposers were determined by standardized methods. In addition, the copper frequently used in viticulture as a fungicide which is potentially responsible for toxic effects on decomposers was measured by ICP-OES after litter mineralization in nitric acid. Our results showed a higher percentage of decomposability by microorganisms in litter with low cellulose content and C/N ratio. Higher isopod consumption and assimilation was found in the litters which is the poorest in tannin, lignin and copper contents. Variation of consumption according to litter was on average 1.5 to 2.7 lower for grape varieties compared to T. tomentosa litter. Assimilation was significantly lower with Pinot Noir than the other litters. To conclude, after seven weeks of experimentation, this study showed that if the growth and survival of woodlice were not affected by inter-varietal differences in vine leaf quality, their role in the decomposition process may be strongly modulated and reduced, especially after consumption of grape variety litters rich in copper, lignin and tannin.

The only lasting truth is change: multiple dimensions of biodiversity show historical legacy effects in community assembly processes of freshwater fish

How communities are structured is a fundamental ecological question. Community structure, while constrained by the regional species pool, may be altered by changes in climate and other environmental stressors. Changes in patterns of functional and phylogenetic dispersion over time can illuminate the temporal dynamics of the processes structuring communities. We quantified temporal changes in taxonomic, functional and phylogenetic diversity of stream fish assemblages in the southern plains of the U.S. across four decades to assess how climatic change has influenced community patterns. We also explored how the use of three different functional trait categories (life history, environmental tolerance and trophic level) and all traits combined affected the response of functional diversity to environmental drivers. We found, for all diversity indices, that assemblages with low historical richness had high contemporary diversity, while assemblages with high historical richness had low contemporary diversity. Functional richness based on life history traits, trophic traits, and all traits combined decreased in diversity over time, while functional richness based on environmental tolerance traits showed the opposite pattern. Phylogenetic dispersion of both over‐ and under‐dispersed communities shifted toward randomness. Changes in fish diversity patterns were influenced by changes in temperature over time, though impacts were metric dependent. Overall, we found that while community structure has changed, specific changes were more strongly predicted by the historical richness of the community than by regional climate change.

Diversity of beetle species and functional traits along gradients of deadwood suggests weak environmental filtering

BackgroundGradients in local environmental characteristics may favour the abundance of species with particular traits, while other species decline, or favour species with different traits at the same time, without an increase in average species abundances. Therefore, we asked: do variations in species and traits differ along gradients of deadwood variables? Do species abundance and trait occurrence change with species richness within or between functional groups? Thus, we analysed the beetle assemblages of five forest sites located in Italy, along the Apennines mountains. MethodsFrom 2012 to 2018 we sampled beetles and five deadwood types in 193 plots to characterise the deadwood gradient: standing dead trees, snags, dead downed trees, coarse woody debris, and stumps. We modelled beetle species relative abundances and trophic traits occurrences against the deadwood variables using joint species distribution models. ResultsOut of 462 species, only 77 showed significant responses to at least one deadwood type, with a weak mean response across species. Trophic groups showed mostly negative responses to deadwood variables. Species abundance increased with species richness among sites only for phytophagous and saproxylophagous. Trait occurrence did not increase with species richness among sites, except for phytophagous and saproxylophagous. However, trait occurrence changed significantly with species richness of several trophic groups within some sites. We found that increases in species richness do not result in decreases in species abundance of a given trophic group, but rather null or positive relationships were found suggesting low interspecific competition. ConclusionsOur findings suggest that in Mediterranean mountain forests there is still room for increasing the level of naturalness, at least for what concerns deadwood management. On one side, our findings suggest that competition for deadwood substrates is still low, on the other side they indicate that increasing deadwood volume and types to improve overall beetle richness may increase also beetle abundances.

Species Composition, Growth, and Trophic Traits of Hairtail (Trichiuridae), the Most Productive Fish in Chinese Marine Fishery.

Hairtail (Scombriformes: Trichiuridae) have always ranked first in single-species production in Chinese marine fishery. However, due to the confusion of species identification, in official statistics, data on hairtail production and economic value are a combination of all the different species of Trichiuridae. In this study, based on sampling along China's coastal areas, the composition and distribution of common hairtail species, as well as their age, growth, and trophic traits, are discussed. Six species of four genera and two subfamilies were identified, and largehead hairtail (Trichiurus japonicus) and Savalai hairtail (Lepturacanthus savala) were the most important populations that constituted catch production. The growth parameter b could be divided into two groups, with values in species mostly inhabiting northern parts of Chinese seas higher than those in southern parts. Most individuals were 1-2 years of age, suggesting species sexual precocity and individual miniaturization under multiple stresses. Species of Trichiuridae are at the top of the food web and play a bottom-up role in regulating the trophic dynamics of marine food webs. Largehead hairtail showed the highest stability and the greatest impact on the stability of the trophic structure. Despite temporary resource maintenance under fishery-induced evolution, the effective recovery and reasonable utilization of hairtail resources are still the main focuses of attention for Chinese marine fishery.

DNA metabarcoding suggests adaptive seasonal variation of individual trophic traits in a critically endangered fish.

Dietary studies are critical for understanding foraging strategies and have important applications in conservation and habitat management. We applied a robust metabarcoding protocol to characterize the diet of the critically endangered freshwater fish Zingel asper (the Rhone streber). We conducted modelling and simulation analyses to identify and characterize some of the drivers of individual trophic trait variation in this species. We found that population density and ontogeny had minor effects on the trophic niche of Z.asper. Instead, our results suggest that the majority of trophic niche variation was driven by seasonal variation in ecological opportunity. The total trophic niche width of Z.asper seasonally expanded to include a broader range of prey. Furthermore, null model simulations revealed that the increase of between-individual variation in autumn indicates that Z.asper become more opportunistic relative to summer and spring, rather than being associated with a seasonal specialization of individuals. Overall, our results suggest an adaptive variation of individual trophic traits in Z.asper: the species mainly consumes a few ephemeropteran taxa (Baetis fuscatus and Ecdyonurus) but seems to be capable of adapting its foraging strategy to maintain its body condition. This study illustrates how metabarcoding data obtained from faeces can be validated and combined with individual-based modelling and simulation approaches to explore inter- and intrapopulational individual trophic traits variation and to test hypotheses in the conventional analytic framework of trophic ecology.

Minimal overall divergence of the gut microbiome in an adaptive radiation of Cyprinodon pupfishes despite potential adaptive enrichment for scale-eating.

Adaptive radiations offer an excellent opportunity to understand the eco-evolutionary dynamics of gut microbiota and host niche specialization. In a laboratory common garden, we compared the gut microbiota of two novel derived trophic specialist pupfishes, a scale-eater and a molluscivore, to closely related and distant outgroup generalist populations, spanning both rapid trophic evolution within 10 kya and stable generalist diets persisting over 11 Mya. We predicted an adaptive and highly divergent microbiome composition in the trophic specialists reflecting their rapid rates of craniofacial and behavioral diversification. We sequenced 16S rRNA amplicons of gut microbiomes from lab-reared adult pupfishes raised under identical conditions and fed the same high protein diet. In contrast to our predictions, gut microbiota largely reflected phylogenetic distance among species, rather than generalist or specialist life history, in support of phylosymbiosis. However, we did find significant enrichment of Burkholderiaceae bacteria in replicated lab-reared scale-eater populations. These bacteria sometimes digest collagen, the major component of fish scales, supporting an adaptive shift. We also found some enrichment of Rhodobacteraceae and Planctomycetia in lab-reared molluscivore populations, but these bacteria target cellulose. Overall phylogenetic conservation of microbiome composition contrasts with predictions of adaptive radiation theory and observations of rapid diversification in all other trophic traits in these hosts, including craniofacial morphology, foraging behavior, aggression, and gene expression, suggesting that the functional role of these minor shifts in microbiota will be important for understanding the role of the microbiome in trophic diversification.

Functional diversity of afrotropical fish communities across river gradients in the Republic of Congo, west central Africa

Characterizing functional freshwater biodiversity patterns and understanding community determinants can aid in predicting changes and prioritizing specific conservation management actions. Afrotropical freshwater systems support diverse ecological communities, including many taxonomically undescribed species, yet few studies have been undertaken in this region and they remain poorly understood. Here, we use functional trait-based approaches to describe the functional diversity of fish assemblages in the Republic of Congo (west Central Africa) from the headwaters of a large basin (upper basin) to the coastal plains (lower basin). Functional traits were assessed using multivariate ordination, and functional diversity was calculated using functional trait-space occupation. We investigated if fish β diversity is nested regionally and at a basin-scale to understand if species assemblages exhibit non-random or environmental filtering patterns. Trait-environment relationships were modeled to determine the most significant drivers of trait diversity, and functional richness (FRic) was calculated for communities in both basins to identify whether Afrotropical systems conform to expected patterns of biodiversity along a fluvial gradient. Moderate to weak community nestedness and various traits associated with resistance and feeding were significantly correlated with habitat variables in the upper and lower basins respectively. Whilst environmental filtering is an important process of community assembly at basin scale, non-random processes are evident in the upper basin, whereas a high turnover was noted in the lower basin. Trophic traits in larger coastal plain habitats of the lower basin suggest higher trophic diversity is associated with higher spatial heterogeneity and nutrient concentrations. High functional turnover between headwaters and coastal plains suggests different functional strategies in fish assemblages between localities along the fluvial gradient. In contrast to expectations derived from temperate lotic systems, functional richness was comparable across both basinswhich suggests that headwater zones in the region harbor substantial functional diversity, especially when considering upstream catchment size. Functional diversity and environment patterns documented show unique patterns of functional richness that may assist in improving understanding of responses, vulnerabilities and conservation needs in Afrotropical systems.

Isotopic and traits-based trophic diversity of Canadian Beaufort Sea benthic communities in relation to food supply

In the Arctic, climate-driven alterations to the quality and quantity of organic matter reaching the seafloor will likely affect benthic food web function. We used biomass-weighted diversity measures based on trophic traits (those related to feeding behaviours, e.g., mobility, size, food source), stable isotope ratios (δ15N and δ13C), and taxonomy to assess linkages between benthic food web structure and indicators of food supply in the shelf and slope ecosystems of the Canadian Beaufort Sea and Amundsen Gulf (down to 500 m). Benthic communities across both regions used a similar diversity of sedimentary organic matter sources according to stable isotopes, despite known differences between regions in organic matter input and benthic–pelagic coupling. Shelf-edge and upper-slope communities exhibited relatively high trophic trait diversity, which likely reflected the exploitation of pulsed food inputs associated with dynamic processes at the shelf break that affect the production and advection of organic matter to the benthos. Pairwise relationships between trophic traits and sedimentary proxies of benthic food supply were not significant at the regional scale. However, cluster analyses supported the notion that trophic trait composition was influenced by proximity to the shelf edge, where food supply is influenced by episodic events that may not be reflected by in situ sedimentary proxies. Our findings add to growing evidence that evaluating trophic traits composition may provide more information regarding functional responses to changes in benthic food supply than either isotopic or taxonomic diversity indices alone.

Trophic niche shifts and phenotypic trait evolution are largely decoupled in Australasian parrots

BackgroundTrophic shifts from one dietary niche to another have played major roles in reshaping the evolutionary trajectories of a wide range of vertebrate groups, yet their consequences for morphological disparity and species diversity differ among groups.MethodsHere, we use phylogenetic comparative methods to examine whether the evolution of nectarivory and other trophic shifts have driven predictable evolutionary pathways in Australasian psittaculid parrots in terms of ecological traits such as body size, beak shape, and dispersal capacity.ResultsWe found no evidence for an ‘early-burst’ scenario of lineage or morphological diversification. The best-fitting models indicate that trait evolution in this group is characterized by abrupt phenotypic shifts (evolutionary jumps), with no sign of multiple phenotypic optima correlating with different trophic strategies. Thus, our results point to the existence of weak directional selection and suggest that lineages may be evolving randomly or slowly toward adaptive peaks they have not yet reached.ConclusionsThis study adds to a growing body of evidence indicating that the relationship between avian morphology and feeding ecology may be more complex than usually assumed and highlights the importance of adding more flexible models to the macroevolutionary toolbox.

Gut-content analysis in four species, combined with comparative analysis of trophic traits, suggests an araneophagous habit for the entire family Palpimanidae (Araneae)

Gut-content analysis in four species, combined with comparative analysis of trophic traits, suggests an araneophagous habit for the entire family Palpimanidae (Araneae)

Pervasive admixture and the spread of a large-lipped form in a cichlid fish radiation.

Adaptive radiations have proven important for understanding the mechanisms and processes underlying biological diversity. The convergence of form and function, as well as admixture and adaptive introgression, are common in adaptive radiations. However, distinguishing between these two scenarios remains a challenge for evolutionary research. The Midas cichlid species complex (Amphilophus spp.) is a prime example of adaptive radiation, with phenotypic diversification occurring at various stages of genetic differentiation. One species, A. labiatus, has large fleshy lips, is associated with rocky lake substrates, and occurs patchily within Lakes Nicaragua and Managua. By contrast, the similar, but thin-lipped, congener, A. citrinellus, is more common and widespread. We investigated the evolutionary history of the large-lipped form, specifically regarding whether the trait has evolved independently in both lakes from ancestral thin-lipped populations, or via dispersal and/or admixture events. We collected samples from distinct locations in both lakes, and assessed differences in morphology and ecology. Using RAD-seq, we genotyped thousands of SNPs to measure population structure and divergence, demographic history, and admixture. We found significant between-species differences in ecology and morphology, local intraspecific differences in body shape and trophic traits, but only limited intraspecific variation in lip shape. Despite clear ecological differences, our genomic approach uncovered pervasive admixture between the species and low genomic differentiation, with species within lakes being genetically more similar than species between lakes. Taken together, our results suggest a single origin of large-lips, followed by pervasive admixture and adaptive introgression, with morphology being driven by local ecological opportunities, despite ongoing gene-flow.

Fish functional diversity as an indicator of resilience to industrial fishing in Patagonia Argentina.

The relationship between fish functional diversity and fishing levels at which its baselines shift is important to identify the consequences of fishing in ecosystem functioning. For the first time, the authors of this study implemented a trait-based approach in the Argentine Patagonian Sea to identify the vulnerability and spatiotemporal changes in functional diversity of fish assemblages incidentally captured by a trawling fleet targeting the Argentine red shrimp Pleoticus muelleri (Spence Bate, 1888) between 2003 and 2014. The authors coupled seven fish trophic traits to a reconstructed fish assemblage for the study area and by-catch and evaluated changes in fish species richness and four complementary functional diversity measures (functional richness, redundancy, dispersion and community trait values) along with fishing intensity, temporal use, latitudinal location and depth of fishing grounds, and vessel length. Resident fishes larger than 30 cm in length, with depressed and fusiform bodies, intermediate to high trophic levels, and feeding in benthic, demersal and midwater areas were vulnerable to by-catch. In addition, fish assemblages exhibited a low functional trait redundancy, likely related to species influxes in a biogeographic ecotone with tropicalisation signs. Significant increases in fish trait richness and dispersion poleward and deep suggested new functional roles in these grounds, matching trends in community body size, reproductive load, maximum depth and trophic level. Finally, a temporal increase in fish species and functional trait removal in fishing grounds led to trait homogenisation since 2003. The authors identified that tipping points in temperate fish functional trait diversity showed the importance of trait-based approaches within ecosystem-based fisheries management.

Cave amphipods reveal co‐variation between morphology and trophic niche in a low‐productivity environment

Abstract Identifying the relationships between morphology and trophic niche is at the core of functional morphology. Low resource diversity and fluxes of organic carbon are expected to constrain trophic specialisation of morphological structures because food resources are too scarce to promote trophic differentiation. However, species from low‐productivity habitats often exhibit specialised biological traits such as resistance to starvation and high food‐finding abilities, which may in turn release constraints on trophic and morphological differentiation among species. Groundwaters are food resource‐limited because of the lack of photosynthetic production and limited inputs of organic carbon from surface ecosystems. We tested for co‐variation between morphology and trophic habits in co‐occurring Niphargus amphipods from five groundwater caves of the Dinaric Karst, Europe. We predicted that the size of gnathopods—the accessory feeding appendages—would positively co‐vary with trophic position: species with larger gnathopods should more easily grab and immobilise prey. We quantified gnathopod size and shape by means of morphometric measurements and assessed isotopic niche, trophic position, and carbon signatures using nitrogen (δ15N) and carbon (δ13C) stable isotopes. We tested for correlation between morphological traits and trophic position and δ13C signatures while accounting for phylogenetic relationships among species. All co‐occurring species differed morphologically in at least one gnathopod measurement and all of them differed in their isotopic niches. As predicted, gnathopod size increased with the increasing trophic position. This co‐variation probably reflects differences in detritivorous and predatory habits among species: amphipods with larger gnathopods, hence larger muscle and more powerful grip, could more easily subdue prey. Moreover, we found a significant correlation between gnathopod shape and the normalised δ13C values, indicating that shape of the gnathopods may be related to exploitation of different food resources. We show that low‐productivity subterranean habitat species can exhibit strong trophic specialisation of morphological structures. Gnathopod size and shape of Niphargus amphipods are functional traits that co‐vary with trophic habits. Our findings pave the way for investigating how co‐variation of morphological and trophic traits may control energy flow and species’ coexistence at lower bounds of habitat productivity.

Testing the short-term effects of a fish invader on the trophic ecology of a closely related species

The effects of invaders on native species are usually tested using species mean trait values over long time scales. However, considering individual variation over short timescales can help us better understand the interaction between invaders and native species. We compared trophic traits of the non-native guppy (Poecilia reticulata) and the native Brazilian poeciliid Phalloceros harpagos using experiments simulating the early stages of an invasive process. We used short-term mesocosms to simulate an early invasion scenario, where the two species were placed together, and a pre-invasion scenario, where species were kept separated, and analyzed interspecific and intraspecific trophic variability. We also compared the foraging efficiency of species in laboratory experiments. We found no differences on the mean diet of both species between pre and early invasion treatments. At the individual level, in the early invasion scenario, individuals of both species reduced their trophic niche as a probable effect of the presence of the heterospecific. Phalloceros harpagos had higher consumption rates than guppies indicating greater efficiency in feeding on invertebrates. Our results suggest that non-native species were not intrinsically better consumers of high-quality resources. Instead, intraspecific variation might be playing an overlooked role in shaping interactions between species during the early stages of invasion.

Fish assemblages of the St. Joseph River Watershed, Indiana: Effects of mainstem dams

AbstractWe tested for effects of two dams on fish assemblages in the St. Joseph River, Indiana. Fishes were collected by boat electrofisher twice annually, at 23 sites from 1998 to 2018. Fish collection data were aggregated into CPUE counts of species per 500 m, and CPUE were pooled across sites above and below the dams. We used multivariate analyses to test for spatial and temporal variation for assemblages above and below dams. Assemblages above and downstream of the dams differed significantly when examined by collection year. The effects (abundances of fish species) of the dams on fish assemblages were different at the South Bend dam from those at the Elkhart dam. Trajectories of temporal change in fish assemblages above and below dams were all gradual and directional. Temporal variation in fish abundance categorised into trophic traits (guilds) differed by location. We suggest that moderate to high stress from anthropogenic impacts on the St. Joseph River appears to result in high assemblage variation above and below dams. The St. Joseph River fish community appears to be unstable, likely from multiple anthropogenic impacts to water quality, habitat degradation and hydrologic alteration. We found that 25 of 33 hydrologic variables in four of five Indicators of Hydrological Alteration groups were significantly altered from 1931 to 2019. However, hydrology variation as potential disturbance events did not visually match observed temporal assemblage variation.

The genomic signature of ecological divergence along the benthic-limnetic axis in allopatric and sympatric threespine stickleback.

The repeated occurrence of similar phenotypes in independent lineages (i.e., parallel evolution) in response to similar ecological conditions can provide compelling insights into the process of adaptive evolution. An intriguing question is to what extent repeated phenotypic changes are underlain by repeated changes at the genomic level and whether patterns of genomic divergence differ with the geographic context in which populations evolve. Here, we combined genomic, morphological and ecological data sets to investigate the genomic signatures of divergence across populations of threespine stickleback (Gasterosteus aculeatus) that adapted to contrasting ecological niches (benthic or limnetic) in either sympatry or allopatry. We found that genome-wide differentiation (FST ) was an order of magnitude higher and substantially more repeatable for sympatric benthic and limnetic specialists compared to allopatric populations with similar levels of ecological divergence. We identified genomic regions consistently differentiated between sympatric ecotypes that were also differentiated between or associated with benthic vs. limnetic niche in allopatric populations. These candidate regions were enriched on three chromosomes known to be involved in the benthic-limnetic divergence of threespine stickleback. Some candidate regions overlapped with QTL for body shape and trophic traits such as gill raker number, traits that strongly differ between benthic and limnetic ecotypes. In summary, our study shows that magnitude and repeatability of genomic signatures of ecological divergence in threespine stickleback highly depend on the geographic context. The identified candidate regions provide starting points to identify functionally important genes for the adaptation to benthic and limnetic niches.