Water quality management requires monitoring of the condition of natural waters by both biologicaland chemical indicators to assess the ecological health of a catchment. General water quality characteristics areextracted through a low-frequency dataset, which allows analyses of long-term trends and seasonality. PlitviceLakes National Park freshwater ecosystem includes springs, rivers, streams and lakes with its specific process oftufa formation. The aim of this study was to determine, based on long-term water quality data, potential changes inphysico-chemical parameters required for ongoing tufa deposition processes. The dataset encompasses a 12-yearperiod (2006 – 2017), with measurements performed from April to October per each year on a weekly basis, coveringthirteen sites belonging to karst springs, streams or lotic biotopes. Positive trends were observed for dissolvedoxygen, conductivity, water hardness, alkalinity, chemical oxygen demand (COD) and nitrites. Negative trendswere observed for temperature, pH and most nutrients (nitrates, ammonia and orthophosphates). Temperature valuesshowed different trend slopes among monitored types. Negative correlations between water level and/or dischargewith conductivity and alkalinity probably indicate the effect of dilution. Conversely, nutrients and CODhave a positive correlation with discharge, possibly indicating resuspension from sediment during high flows. Theanalyses of spatial and temporal variations in hydrochemistry through a longer period imply annual alterations,correlations between hydrological components and water chemistry, and significant differences among monitoredtypes, while the tufa deposition process is stable. Long-term monitoring and continuous data analyses can help infuture planning of monitoring programs and the improved understanding of climate changes.