Transcript Levels Of Biosynthetic Genes Research Articles

Improvement of FK506 production by synthetic biology approaches.

Synthetic biology has been applied to direct improvement of valuable metabolite productions. Tacrolimus (FK506), a clinically used immunosuppressive agent isolated from many Streptomyces, is produced by fermentation in industry. Here we chose FK506 as an example to review recent progress in improving FK506 production, including enhancing transcription levels of biosynthetic genes, accelerating post-translational modification levels of biosynthetic enzymes, increasing activities of rate limiting enzymes, and rational supplement of limited precursors. FK506 production was increased from 25% to sevenfold by these synthetic biology approaches.

Expression of Terpenoid Biosynthetic Genes and Accumulation of Chemical Constituents in Valeriana fauriei.

Valeriana fauriei (V. fauriei), which emits a characteristic and unpleasant odor, is important in traditional medicine. In this study, the expression of terpenoid biosynthetic genes was investigated in different organs that were also screened for volatile compounds including valerenic acid and its derivatives. Specific expression patterns from different parts of V. fauriei were observed using quantitative real-time PCR (qRT-PCR). The highest transcript levels of biosynthetic genes involved in mevalonic acid (MVA) and methylerythritol phosphate (MEP) production were found in the stem. Although the amounts of volatile compounds were varied by organ, most of the volatile terpenoids were accumulated in the root. Gas chromatography mass spectrometry (GC-MS) analysis identified 128 volatile compounds, which represented 65.33% to 95.66% of total volatiles. Certain compounds were only found in specific organs. For example, isovalerenic acid and valerenic acid and its derivatives were restricted to the root. Organs with high transcript levels did not necessarily have high levels of the corresponding chemical constituents. According to these results, we hypothesize that translocation may occur between different organs in V. fauriei.

Enhanced production of ganoderic acids in static liquid culture of Ganoderma lucidum under nitrogen-limiting conditions

The effect of nitrogen limitation on the production of the antitumor compounds, ganoderic acids (GAs), by Ganoderma lucidum and on transcription levels of triterpene biosynthesis genes in this mushroom was investigated. At 3mM glutamine, a maximal content of GA-Mk, GA-T, GA-S, and GA-Me was 2.16, 11.76, 31.09, and 7.04μg/mg cell dry weight, respectively, which was 2.8-, 5.8-, 8.3-, and 5.1-fold that obtained at 60mM glutamine. The transcription levels of biosynthetic genes encoding 3-hydroxy-3-methylglutaryl-CoA reductase, farnesyl pyrophosphate synthase, squalene synthase, lanosterol synthase, and a putative nitrogen regulator, AreA, were up-regulated by 37-, 18-, 4.5-, 3.2-, and 13-fold, respectively, in nitrogen limitation conditions, suggesting that increased GAs biosynthesis may result from higher expression of those genes. This study demonstrated a useful strategy for enhancing GAs production and provided useful information for further investigation on its biosynthesis regulation.

Carotenoid composition and changes in expression of carotenoid biosynthetic genes in tepals of Asiatic hybrid lily

With 6 figures and 2 tables Abstract To elucidate the regulatory mechanisms of carotenoid accumulation in tepals of Asiatic hybrid lily (Lilium spp.), the content and composition of carotenoids and transcriptional changes of carotenoid biosynthetic genes were compared between tepals of yellow, red, pink and white flowers. Yellow and red tepal cultivars accumulated high amounts of carotenoids, and cultivars with pink and white tepals accumulated small amounts of carotenoids. Most of the carotenoids in yellow petals were antheraxanthin, (9Z)-violaxanthin, cis-lutein and violaxanthin. Capsanthin was accumulated in red tepals. Transcription of phytoene synthase, phytoene desaturase, ζ-carotene desaturase, carotenoid isomerase and β-ring hydroxylase in tepals increased as tepals grew. Among yellow and red tepal cultivars, the amounts of carotenoids were well associated with the transcription levels of biosynthetic genes, indicating that transcription levels regulate carotenoid accumulation in these cultivars. However, in pink and white tepals, the transcription levels of biosynthetic genes were similar to those in red tepals, indicating that small amounts of carotenoids are not explained by down-regulation of biosynthetic genes. Another factor should reduce carotenoid amounts in these tepals.

Linking metabolic QTLs with network and cis-eQTLs controlling biosynthetic pathways.

Phenotypic variation between individuals of a species is often under quantitative genetic control. Genomic analysis of gene expression polymorphisms between individuals is rapidly gaining popularity as a way to query the underlying mechanistic causes of variation between individuals. However, there is little direct evidence of a linkage between global gene expression polymorphisms and phenotypic consequences. In this report, we have mapped quantitative trait loci (QTLs)–controlling glucosinolate content in a population of 403 Arabidopsis Bay × Sha recombinant inbred lines, 211 of which were previously used to identify expression QTLs controlling the transcript levels of biosynthetic genes. In a comparative study, we have directly tested two plant biosynthetic pathways for association between polymorphisms controlling biosynthetic gene transcripts and the resulting metabolites within the Arabidopsis Bay × Sha recombinant inbred line population. In this analysis, all loci controlling expression variation also affected the accumulation of the resulting metabolites. In addition, epistasis was detected more frequently for metabolic traits compared to transcript traits, even when both traits showed similar distributions. An analysis of candidate genes for QTL-controlling networks of transcripts and metabolites suggested that the controlling factors are a mix of enzymes and regulatory factors. This analysis showed that regulatory connections can feedback from metabolism to transcripts. Surprisingly, the most likely major regulator of both transcript level for nearly the entire pathway and aliphatic glucosinolate accumulation is variation in the last enzyme in the biosynthetic pathway, AOP2. This suggests that natural variation in transcripts may significantly impact phenotypic variation, but that natural variation in metabolites or their enzymatic loci can feed back to affect the transcripts.