Traits Of Cows Research Articles

Heifer Fertility Relationship with First Lactation Cow Traits of Friesian Dairy Cattle in Egypt

Heifer Fertility Relationship with First Lactation Cow Traits of Friesian Dairy Cattle in Egypt

Host genetic regulation of specific functional groups in the rumen microbiome of dairy cows: Implications for lactation trait

IntroductionRuminants play a pivotal role in our society by transforming non-consumable substances from industrial by-products and plant fibers into valuable resources such as meat and milk. This remarkable conversion ability is primarily attributed to the rumen microbiota, which is influenced by various factors, including diet, climate, and geographical location. In recent years, increasing research has shown that host factors (breed, genetic variation, etc.) also play vital roles in shaping rumen microbial composition and function in cattle. ObjectiveThis study aims to provide a theoretical basis and an opportunity for further investigating the regulation of lactation traits in dairy cows through host genetics and the interaction with the rumen microbiota. MethodTo investigate the interactions between host genotype, rumen microbiota, and animal phenotype, we curated and analyzed the dairy herd improvement (DHI) data, single nucleotide polymorphisms (SNPs) genotypes, and 16S rumen microbiota data from 1,169 Holstein dairy cows. Heritability and microbiability estimation, along with genome-wide association studies (GWAS) were performed to identify candidate microorganisms and host genetic loci. ResultWe identified thirty-one heritable taxa, whose functions were predominantly enriched in carbohydrate metabolism and energy metabolism. The genome-wide association study revealed that nine heritable bacteria were significantly associated with forty-three SNPs. Functional genes located within or near these SNPs were primarily associated with rumen epithelial development. Additionally, these nine heritable bacteria were primarily annotated as complex polysaccharide degraders and butyrate producers, such as Fibrobacter sp900143055 and Pseudoruminococcus massiliensis, which showed significant associations with milk yield and milk fat percentage. Compared to previous studies, we newly discovered the existence of a high heritability of Olsenella umbonate, Butyrivibrio hungatei, among others.

Association of SPP1 and NCAPG genes with milk production traits in Chinese Holstein cows: polymorphism and functional validation analysis.

Milk production traits play an important role in dairy cattle breeding, and single nucleotide polymorphisms can be used as effective molecular markers for milk production trait marker-assisted breeding in dairy cattle. Based on the results of the preliminary GWAS, candidate genes SPP1 and NCAPG associated with milk production traits were screened. In this study, the aim was to screen and characterize the SNPs of SPP1 and NCAPG genes about milk production traits. Two SNPs and one haplotype block of the SPP1 gene and four SNPs and one haplotype block of the NCAPG gene were obtained by amplification, sequencing and association analysis, and all six SNPs were located in the exon region. Association analysis showed that all six SNPs were significantly associated with milk protein percentage. Linkage disequilibrium analysis showed that 2 SNPs of SPP1 (g. 36,700,265 C > T and g. 36,693,596 C > A) constituted a haplotype that correlated with milk protein percentage, and the dominant haplotype was H2H2, which was CCTT. 4 SNPs of NCAPG (g. 37,342,705 C > A, g. 37,343,379 G > T, g. 37,374,314 C > A and g. 37,377,857 G > A) constituted a haplotype associated with milk protein percentage, 305-days milk protein yield and 305 days milk yield. Tissue expression profiling results revealed that SPP1 and NCAPG had the highest expression in mammary tissue. Interference with SPP1 and NCAPG inhibited the proliferation of Bovine mammary epithelial cells. (BMECs), down-regulated the expression of PCNA, CDK2 and CCND1, up-regulated the expression of BAX and BAD, and promoted apoptosis. Reduced triglyceride synthesis in BMECs, down-regulated the expression of DGAT1, DGAT2, LPIN1, and AGPAT6.SPP1 and NCAPG are involved in the synthesis of milk proteins, and interfering with SPP1 and NCAPG decreased the secretion of β-casein, κ-casein, and αs1-casein, as well as up-regulated the CSN2 and CSN3 expression. The above results indicate that the SNP loci of SPP1 and NCAPG can be used as potential molecular markers to improve milk production traits in dairy cows, laying the foundation for marker-assisted selection. It also proves that SPP1 and NCAPG can be used as candidate key genes for milk production traits in dairy cows, providing new insights into the physiological mechanisms of lactation regulation in dairy cows.

Genomic Prediction and Genome-Wide Association Studies for Productivity, Conformation and Heat Tolerance Traits in Tropical Smallholder Dairy Cows.

Genomic selection (GS) and genome-wide association studies (GWAS) have not been investigated in Vietnamese dairy cattle, even for basic milk production traits, largely due to the scarcity of individual phenotype recording in smallholder dairy farms (SDFs). This study aimed to estimate heritability (h2) and test the applicability of GS and GWAS for milk production, body conformation and novel heat tolerance traits using single test day phenotypic data. Thirty-two SDFs located in either the north (a lowland vs. a highland) or the south (a lowland vs. a highland) of Vietnam were each visited for an afternoon and the next morning to collect phenotype data of all lactating cows (n = 345). Tail hair from each cow was sampled for subsequent genotyping with a 50K SNP chip at that same visit. Milk production traits (single-test day) were milk yield (MILK, kg/cow/day), energy corrected milk yield adjusted for body weight (ECMbw, kg/100 kg BW/day), fat (mFA, %), protein (mPR, %) and dry matter (mDM, %). Conformation traits were body weight (BW, kg) and body condition score (BCS, 1 = thin to 5 = obese). Heat tolerance traits were panting score (PS, 0 = normal to 4.5 = extremely heat-stressed) and infrared temperatures (IRTs, °C) at 11 areas on the external body surface of the cow (inner vulval lip, outer vulval surface, inner tail base surface, ocular area, muzzle, armpit area, paralumbar fossa area, fore udder, rear udder, forehoof and hind hoof), assessed by an Infrared Camera. Univariate linear mixed models and a 10-fold cross-validation approach were applied for GS. Univariate single SNP mixed linear models were applied for the GWAS. Estimated h2 (using the genotype information to build relationships among animals) were moderate (0.20-0.37) for ECMbw, mFA, mPR, mRE, BW, BCS and IRT at rear udder; low (0.08-0.19) for PS and other IRTs; and very low (≤ 0.07) for MILK, ECM and mDM. Accuracy of genomic estimated breeding values (GEBVs) was low (≤ 0.12) for MILK, ECM, mDM and IRT at hind hoof; and moderate to high (0.32-0.46) for all other traits. The most significant regions on chromosomes (BTA) associated with milk production traits were 0.47-1.18 Mb on BTA14. Moderate to high h2 and moderate accuracies of GEBVs for mFA, mPR, ECMbw, BCS, BW, PS and IRTs at rear udder and outer vulval surface suggested that GS using single test day phenotypic data could be applied for these traits. However, a greater sample size is required to decrease the bias of GEBVs by GS and increase the power of detecting significant quantitative trait loci (QTLs) by GWAS.

Evaluation of the infl uence of inbreeding on milk productivity, reproductive traits and longevity of cows of Holstein breed

The purpose of the work was to evaluate the infl uence of inbreeding on milk productivity, reproductive traits and longevity of cows of Holstein breed. The studies were carried out under the conditions of the breeding farm Konstantinovo. The animals were divided into groups depending on the mating type such as outbreeding and inbreeding. Inbred animals were divided into groups depending on the level of inbreeding: remote, moderate and close. According to the results of the evaluation of the fi rst-calf cows by milk productivity, the highest milk yield, as well as the amount of fat and protein in milk was in cows from moderate inbreeding. It was found that the milk yield for the full and 305 days of lactation of inbred animals (9411 kg and 8408 kg) was higher compared to outbred animals by 1003 kg or 10.6 % and 1028 kg or 13.1 %, respectively. The yield of milk fat and protein in these groups was the highest 346.2 and 308.9 kg. The milk productivity of cows evaluated by the third lactation, the best indicators were in the group of animals with moderate inbreeding as well as in outbred animals. Thus, the milk yield for the full and 305 days of lactation was higher in the group of outbred cows by 876 kg or 9.0 % and 376 kg or 4.6 %. Analysis of reproductive traits of cows showed that live weight at fi rst insemination was higher in the group of inbred animals (373.4 kg), and higher compared to outbred animals by 0.7 %. The age in fi rst insemination in the group of inbred cows was lower by 2.1 months (p < 0.001). It was established according to indicators of longevity and lifetime productivity of cows depending on the level of inbreeding that outbred animals were the best.

Some Yield and Growth Traits of Anatolian Buffaloes and the Effects of First Calving Age and Calving Interval on These Traits

Numerous in-depth studies have described the fertility traits, growth performance and milk yield traits of dairy animals, which are considered indicators of welfare, but there are limited studies examining these traits within the framework of cause-effect relationships, especially in buffaloes. The aim of this study was to determine the changes in some milk, growth and fertility traits of Anatolian buffaloes over the years in some dairy farms where the Buffalo Breeding Project in Public Conditions was implemented in Samsun province and, to investigate the effects of first calving age (FCA) and calving interval (CI) on milk and growth traits. The study was conducted in 27 buffalo farms (3295 buffalo cows and 3317 buffalo calves) located in Bafra district, the region with the highest buffalo population in Samsun province, Türkiye. The data was taken from records previously kept within the scope of the relevant project. The data such as growth characteristics [birth weight (BW), 6th and 12th-mo live weight (LW) values of calves born between 2013-2020] and lactation traits of cows [lactation milk yield (LMY) and lactation duration (LD)] and FCA and CI values were analyzed by analysis of variance. The effect of years on LMY of buffalo cows was found to be significant, and significant positive changes were determined from year to year. In addition, the BW, 6th-mo, and 12th-mo LW values of calves also varied from year to year. As the FCA value of buffaloes increased, the BW, 6th-mo, and 12th-mo LW values of calves and LMY of cows increased. Similarly, CI values affected the BW values of calves (P<0.01), and LMY and LD values increased in parallel with the increase in CI values. Consequently, determining the lactation and growth traits of buffaloes could benefit developing herd management practices that would optimize these performance indicators.

A comprehensive analysis of the effects of DGAT1 K232A polymorphism on milk production and fertility traits in Holstein Friesian and Jersey cows reared in Türkiye

Abstract. Research on the diacylglycerol acyltransferase 1 (DGAT1) K232A marker in cattle shows inconsistent results across regions, largely due to small sample sizes, limited genetic variation, and data restricted to few lactations, which complicates establishing a reliable genotype–phenotype correlation. This research aimed to determine the effect of the K232A polymorphism of the bovine DGAT1 gene on milk production and quality traits in dairy cattle. We used 1104 cattle, including 828 Holstein Friesian and 276 Jersey cows. The analysis utilized extensive data from six lactations of cows raised on four commercial dairy farms. We genotyped the population using the polymerase chain reaction–restriction fragment length polymorphism (PCR-RFLP) technique and Sanger sequencing for verification. We then evaluated the 305 d and test-day milk yields as well as fat and protein yields and percentages. The number of inseminations per conception and calving ease were also assessed as reproduction indices. Genotype–phenotype associations were quantified using linear mixed models. The AA genotype was absent in Jersey cows, and the heterozygous genotype was predominant in both breeds. The K232A marker was significantly associated with test-day milk yield, fat, and protein content in Jersey cows. Further, it substantially affected the fat percentage of milk in Holstein Friesian cows (p<0.001). We found that the KK genotype is highly desirable for milk quality and especially fat content. This comprehensive assessment demonstrated that the KK genotype of the DGAT1 K232A polymorphism significantly influenced fat and protein contents in dairy cattle.

Quantifying the effects of the mitochondrial genome on milk production traits in dairy cows: empirical results and modelling challenges

Significant advances in livestock traits have been achieved primarily through selection strategies targeting variation in the nuclear genome, with little attention given to mitogenome variation. We analyzed the influence of the mitogenome on milk production traits of Holstein cattle in Croatia based on strategically generated next-generation sequencing data for 109 cows pedigree-linked to 7115 milk production records (milk, fat and protein yield) from 3006 cows (first 5 lactations). Since little is known about the biology of the relationship between mitogenome variation and production traits, our quantitative genetic modeling was complex. Thus, the proportion of total variance explained by mitogenome inheritance was estimated using 5 different models: (1) cytoplasmic model with maternal lineages (CYTO), (2) haplotypic model with mitogenome sequences (HAPLO), (3) amino acid model with unique amino acid sequences (AMINO), (4) evolutionary model based on a phylogenetic analysis using Bayesian Evolutionary Analysis Sampling Trees phylogenetic analysis (EVOL), and (5) mitogenome SNP model (SNPmt). The polygenic autosomal and X chromosome additive genetic effects based on pedigree were modeled, together with the effects of herd-year-season interaction, permanent environment, location, and age at first calving. The estimated proportions of phenotypic variance explained by mitogenome in 4 different models (CYTO, HAPLO, AMINO, and SNPmt) were found to be substantial given the size of mitogenome, ranging from 5% to 7% for all 3 milk traits. At the same time, a negligible proportion of the phenotypic variance was explained by mitogenome with the EVOL model. Similarly, in all models, no proportion of phenotypic variance was explained by the X chromosome. Although our results should be confirmed in other dairy cattle populations, including a large number of sequenced mitogenomes and nuclear genomes, the potential of utilizing mitogenome information in animal breeding is promising, especially as the acquisition of complete genome sequences becomes cost-effective.

Modelling heat stress effects on milk production traits in Tunisian Holsteins using a random regression approach.

This study investigated the impact of temperature and humidity on milk production traits in Tunisian dairy cows, analysing population-level trends and individual cow responses using various modelling techniques and heat stress (HS) indices. Two distinct datasets were used for this purpose: the first included 551,139; 331,654 and 302,396 test-day records for milk, fat and protein yields, respectively. The second supplemented the production information with daily average (THIavg) and maximum (THImax) temperature-humidity index (THI) data. Three main parts of analyses were conducted simultaneously: classical least squares, identification of HS thresholds and associated production losses and assessment of individual cow responses using random regression models (RRM) fitting various continuous functions that include/exclude individual effects. The best model, determined by goodness-of-fit measurements, was a cubic polynomial function that accounted for individual variation and THIavg as a heat load measure. HS thresholds were established at THIavg/THImax of 70/74 for milk yield, 50/55 for fat percentage, 59/66 for protein percentage, 54/63 for fat yield and 56/66 for protein yield. According to the fitted polynomial models, daily milk production traits showed a curvilinear decline with accelerated loss rates beyond the established thermal thresholds. However, for all models and thermal indices, maximum daily production losses remained below 164 g/day, 4.4 g/day and 6.1 g/day for milk, fat and protein yields, respectively. Despite these losses, the relatively high thermal thresholds and lower associated production losses suggest that Tunisian dairy cows can tolerate high heat loads. Moreover, observed variations in response patterns indicate potential for selecting heat-tolerant individuals within this population.

A Functional 67-bp Duplication Locating at the Core Promoter Region within the Bovine ADIPOQ Gene Is Associated with Ovarian Traits and mRNA Expression.

ADIPOQ plays a crucial role in regulating the reproductive system, but there are few reports on the effects of ADIPOQ on ovarian in dairy cows. Previous studies have verified the presence of a 67-bp mutation in the promoter region of the ADIPOQ gene. Hence, we employed ovarian tissues (n = 2111) and blood samples (n = 108) from Chinese Holstein cows as experimental samples to examine the association between ADIPOQ promoter variants and ovarian traits. We extracted DNA from these samples and conducted genetic typing identification on each sample using advanced techniques like PCR and agarose gel electrophoresis. Consequently, the DD, ID, and II genotypes were discovered. and it has been observed that the mutation frequency of this locus is low in the Chinese Holstein cow. Importantly, the correlational analysis unveiled a significant relationship (p < 0.05) between the weight of ovaries in late estrus and the width of ovaries during the estrus interval with the mutation. Result of the RT-PCR revealed that the ID genotype partially diminished the expression of the ADIPOQ gene. The results of this study suggest that the identified variable duplication could serve as a potential genetic marker for enhancing the ovarian traits of Chinese Holstein cows.

Phenotypic and Genetic Analyses of Mastitis, Endometritis, and Ketosis on Milk Production and Reproduction Traits in Chinese Holstein Cattle.

Mastitis (MAS), endometritis (MET), and ketosis (KET) are prevalent diseases in dairy cows that result in substantial economic losses for the dairy farming industry. This study gathered 26,014 records of the health and sickness of dairy cows and 99,102 data of reproduction from 13 Holstein dairy farms in Central China; the milk protein and milk fat content from 56,640 milk samples, as well as the pedigree data of 37,836 dairy cows were obtained. The logistic regression method was used to analyze the variations in the prevalence rates of MAS, MET, and KET among various parities; the mixed linear model was used to examine the effects of the three diseases on milk production, milk quality, and reproductive traits. DMU software (version 5.2) utilized the DMUAI module in conjunction with the single-trait and two-trait animal model, as well as best linear unbiased prediction (BLUP), to estimate the genetic parameters for the three diseases, milk production, milk quality, and reproductive traits in dairy cows. The primary findings of the investigation comprised the following: (1) The prevalence rates of MAS, MET, and KET in dairy farms were 20.04%, 10.68%, and 7.33%, respectively. (2) MAS and MET had a substantial impact (p < 0.01) on milk production, resulting in significant decreases of 112 kg and 372 kg in 305-d Milk Yield (305-d MY), 4 kg and 12 kg in 305-d Protein Yield (305-d PY), and 6 kg and 16 kg in 305-d Fat Yield (305-d FY). As a result of their excessive 305-d MY, some cows were diagnosed with KET due to glucose metabolism disorder. The 305-d MY of cows with KET was significantly higher than that of healthy cows (205 kg, p < 0.01). (3) All three diseases resulted in an increase in the Interval from Calving to First Service (CTFS, 0.60-1.50 d), Interval from First Service to Conception (FSTC, 0.20-16.20 d), Calving Interval (CI, 4.00-7.00 d), and Number of Services (NUMS, 0.07-0.35). (4) The heritabilities of cows with MAS, MET, and KET were found to be low, with values of 0.09, 0.01, and 0.02, respectively. The genetic correlation between these traits ranged from 0.14 to 0.44. This study offers valuable insights on the prevention and control of the three diseases, as well as feeding management and genetic breeding.

Genome-Wide Association Study as an Efficacious Approach to Discover Candidate Genes Associated with Body Linear Type Traits in Dairy Cattle.

Body shape traits are very important and play a crucial role in the economic development of dairy farming. By improving the accuracy of selection for body size traits, we can enhance economic returns across the dairy industry and on farms, contributing to the future profitability of the dairy sector. Registered body conformation traits are reliable and cost-effective tools for use in national cattle breeding selection programs. These traits are significantly related to the production, longevity, mobility, health, fertility, and environmental adaptation of dairy cows. Therefore, they can be considered indirect indicators of economically important traits in dairy cows. Utilizing efficacious genetic methods, such as genome-wide association studies (GWASs), allows for a deeper understanding of the genetic architecture of complex traits through the identification and application of genetic markers. In the current review, we summarize information on candidate genes and genomic regions associated with body conformation traits in dairy cattle worldwide. The manuscript also reviews the importance of body conformation, the relationship between body conformation traits and other traits, heritability, influencing factors, and the genetics of body conformation traits. The information on candidate genes related to body conformation traits provided in this review may be helpful in selecting potential genetic markers for the genetic improvement of body conformation traits in dairy cattle.

Efficiency of Utilizing Bulls with High Immune Response (HIR) in Terms of Reproductive Traits of PHF Cows.

Reproductive traits in dairy cattle are crucial for herd productivity and profitability. This study investigates the influence of relatedness to high immune response (HIR) Immunity+ sires on reproductive performance indicators in Polish Holstein-Friesian cows. A total of 5094 cows were analyzed, categorized based on their relatedness to HIR Immunity+ sires, and assessed for various reproductive parameters, including age at first insemination, gestation length, days open, calving interval, and calving ease. The results showed that the level of relatedness to HIR Immunity+ sires influenced certain reproductive traits, such as service period, gestation length, and age at first and second calving. Additionally, cows related to HIR Immunity+ sires exhibited a higher frequency of twin pregnancies and more complicated births. While some benefits were observed in certain reproductive traits among cows related to HIR Immunity+ sires, such as reduced age at first insemination and shortened gestation length, the overall impact on reproductive efficiency remains inconclusive. Further studies are needed to fully elucidate the effects of using semen from HIR Immunity+ sires on reproductive performance in dairy cattle.

Genome-wide associative analysis of reproductive characteristics of a black-and-white Holstein cattle population in the conditions of the Northwestern region

In recent years, genomic assessment and the widespread introduction of modern biotechnological techniques have played a leading role in the implementation of breeding programs. For a long time, increasing milk productivity has been the main goal of breeding. This led to a significant decrease in reproduction in herds. The reproductive indicators of the uterine livestock of cattle can largely reduce the total profitability due to additional costs for manual, veterinary assistance and forced culling. Experienced groups are genotyped using the Bovinesnp50 V3 Beadchip chip are formed from the cows of black-and-white holsteinized breed. For the study, the main reproductive traits of cows were chosen: the age of the first insemination, the insemination indices in front of the first (a), the second (b), the third (c), fourth (d) lactation and the period between hotels. Analysis of associations throughout the genome was carried out using EMMAX software. 2 significant SNP and 5 conditionally significant were found. The CAMK2D candidate gene with the age at the first insemination, the TLN2, WSCD2, GAPT genes with the indicator, the number of insemination and genes WDR36, TDRD10 with the inter -suffering period was identified. Based on the studies, we assume that with age there is a change in the genetic factors affecting animal fertility. The identified candidate genes affect the mechanisms of maturation of follicles, so the growth and development of embryos. The results can be used both for the selection of animals to improve reproduction indicators, and for the search for the fundamental foundations of the formation of fertility in cattle.

WPŁYW ZRÓZNICOWANEJ ZAWARTO ˙ SCI BIAŁKA I MOCZNIKA W MLEKU, JAKO BIOMERKERÓW ´ ENERGETYCZNO-BIAŁKOWEGO ZBILANSOWANIA DAWEK POKARMOWYCH, NA POZIOM WYBRANYCH CECH UZYTKOWO ˙ SCI MLECZNEJ KRÓW RASY POLSKIEJ ´ HOLSZTYNSKO-FRYZYJSKIEJ

The aim of the study was to assess the impact of varied levels of milk protein and urea content on selected milk production traits of Polish Holstein-Friesian cows. The research included 34,397 data sets related to daily milk production of Polish Holstein-Friesian cows. These animals were kept in 15 cattle herds located in the Mazovian and Podlasie voivodeships. In the first stage of the research, the animals were differentiated based on the level of urea in their milk and the percentage of protein. According to the adopted assumptions, the energy and protein balance level of feed rations was determined based on the concentration of urea and protein in the milk. Due to the level of urea, three cow groups were distinguished: &lt;150, 150–250, and &gt;250 mg · L-1. Depending on the concentration of protein in the milk, the following three groups of animals were determined: &lt;3.2%, 3.2–3.6%, and &gt;3.6%. The assessment of the impact of varied energy and protein balance levels in feed rations on selected milk production traits of cows was conducted in subsequent lactation periods, production level and fat to protein (F/P) groups. Four lactation periods were distinguished, which covered successive months of lactation: 1–3, 4–6, 7–10, and 11–18, three production groups, determined based on the following levels of daily milk yield: &lt;20, 20–30, and &gt;30 kg and as well three groups of cows with different F/P ratio in milk were distinguished: &lt;1.2, 1.2–1.6, &gt;1.6. In the next stage of the study, a detailed assessment was conducted on the impact of varied levels of energy and protein balance in feed rations on the analyzed milk production traits. The analyzed population of cows was divided into 9 groups based on the level of urea content (mg · L-1) and protein concentration (%), with varying levels of coverage of the protein and energy requirements of cows. The interdependencies between milk performance traits of cows fed diets with balanced levels of energy and protein and their peers, for whom the nutritional diets were differentiated based on energy-protein balance, were determined using Pearson correlation coefficients and linear regression. When assessing the energy supply of cows, the study showed that too low energy levels in diets lead to a decrease in the chemical composition of milk, while too high levels lead to a decrease in milk yield compared to peers fed optimally balanced diets. Milk from cows with inadequate energy and protein nutrition contained less fat and protein by 0.54% and 0.59%, respectively, compared to milk from cows fed optimally. On the other hand, excessive energy supply was accompanied by an increase in fat (+0.66%) and protein (+0.57%) concentration with a decrease in daily milk yield (-4,1 kg). When evaluating the level of protein coverage for cows, the study showed that an excess of protein in feed led to an increase in urea levels in milk. The level of urea in milk from cows fed with excess protein in their feed (&gt;250 mg · L-1 and &lt;3.2%; &gt;250 mg · L-1 and &gt;3.6%; &gt;250 mg · L-1 and 3.2–3.6%) contained more urea per liter compared to milk from cows fed a balanced diet, with increases of 127, 107, and 109 mg, respectively.

Polymorphisms of the SCD1 Gene and Its Association Analysis with Carcass, Meat Quality, Adipogenic Traits, Fatty Acid Composition, and Milk Production Traits in Cattle.

Stearoyl-CoA desaturase-1 (SCD1) is a key enzyme in the biosynthesis of monounsaturated fatty acids and is considered a candidate gene for improving milk and meat quality traits. Sanger sequencing was employed to investigate the genetic polymorphism of the fifth exon and intron of bovine SCD1, revealing four SNPs, g.21272246 A>G, g.21272306 T>C, g.21272422 C>T, and g.21272529 A>G. Further variance analysis and multiple comparisons were conducted to examine the relationship between variation sites and economic traits in Chinese Simmental cattle, as well as milk production traits in Holstein cows. The findings revealed these four loci exhibited significant associations with carcass traits (carcass weight, carcass length, backfat thickness, and waist meat thickness), meat quality (pH value, rib eye area, and marbling score), adipogenic traits (fat score and carcass fat coverage rate), and fatty acid composition (linoleic acid and α-linolenic acid). Furthermore, these loci were additionally found to be significantly associated with average milk yield and milk fat content in cows. In addition, a haplotype analysis of combinations of SNPs showed that H2H3 has a significant association with adipogenic traits and H2H2 was associated with higher levels of linoleic acid and α-linolenic acid than the other combinations. These results suggest that the four SNPs are expected to be prospective genetic markers for the above economic traits. In addition, the function of SNPs in exon 5 of SCD1 on gene expression and protein structure needs to be explored in the future.

Effect on prime animal beef merit from breeding solely for lighter dairy cows

As the proportion of prime carcasses originating from dairy herds increases, the focus is shifting to the beef merit of the progeny from dairy herds. Several dairy cow total merit indexes include a negative weight on measures of cow size. However, there is a lack of knowledge on the effect of genetic selection, solely for lighter or smaller-sized dairy cows, on the beef performance of their progeny. Therefore, the objective of this study was to quantify the genetic correlations among cow size traits (i.e., cow BW, cow carcass weight [CW]), cow BCS, cow carcass conformation (CC), and cow carcass fat cover (CF), as well as the correlations between these cow traits and a series of beef performance slaughter-related traits (i.e., CW, CC, CF, and age at slaughter [AS]) in their progeny. After data editing, there were 52,950 cow BW and BCS records, along with 57,509 cow carcass traits (i.e., CW, CC, and CF); carcass records from 346,350 prime animals along with AS records from 316,073 prime animals were also used. Heritability estimates ranged from moderate to high (0.18-0.62) for all cow and prime animal traits. The same carcass trait in cows and prime animals were strongly genetically correlated with each other (0.76-0.85), implying that they are influenced by very similar genomic variants. Selecting exclusively for cows with higher BCS (i.e., fatter) will, on average, produce more conformed prime animal carcasses, owing to a moderate genetic correlation (0.30) between both traits. Genetic correlations revealed that selecting exclusively for lighter BW or CW cows will, on average, result in lighter prime animal carcasses of poor CC, while also delaying slaughter age. Nonetheless, selective breeding through total merit indexes should be successful in breeding for smaller dairy cows and desirable prime animal carcass traits concurrently, because of the nonunity genetic correlations between the cow and prime animal traits; this will help to achieve a more ethical, environmentally sustainable, and economically viable dairy-beef industry.

Genetic Association of APOA5 and AKT3 Genes with Milk Production Traits in Chinese Holstein Cows

Genome selection (GS) technology is an important means to improve the genetic improvement of dairy cows, and the mining and application of functional genes and loci for important traits is one of the important bases for accelerating genetic improvement. Our previous study found that the apolipoprotein A5 (APOA5) and AKT serine/threonine kinase 3 (AKT3) genes were differentially expressed in the liver tissue of Chinese Holstein cows at different lactation stages and influenced milk component synthesis and metabolism, so we considered these two genes as the candidates affecting milk production traits. In this study, we found in total six single nucleotide polymorphisms (SNPs), three in APOA5 and three in AKT3. Subsequent association analysis showed that the six SNPs were significantly associated with milk yield, fat yield, protein yield, or fat percentage (p ≤ 0.05). Three SNPs in APOA5 formed a haplotype block, which was found to be significantly associated with milk yield, fat yield, and protein yield (p ≤ 0.05). In addition, four SNPs were proposed to be functional mutations affecting the milk production phenotype, of which three, 15:g.27446527C&gt;T and 15:g.27447741A&gt;G in APOA5 and 16:g.33367767T&gt;C in AKT3, might change the transcription factor binding sites (TFBSs), and one is a missense mutation, 15:g.27445825T&gt;C in APOA5, which could alter the secondary structure and stability of mRNA and protein. In summary, we demonstrated the genetic effects of APOA5 and AKT3 on milk production traits, and the valuable SNPs could be used as available genetic markers for dairy cattle’s GS.

Effects of breed and genomic inbreeding on milk, fat and protein lactation yields and fertility traits in pasture-based dairy cows in Argentina

Abstract The objective of the current study was to evaluate the effects of breed and genomic inbreeding on 305-day lactation yields of milk, fat and protein; and fertility traits of pasture-based dairy cows in Argentina. The genomic inbreeding and heterozygosity of 890 first-lactation cows and 27 bulls were calculated through methods based on the genomic relationship matrix and run of homozygosity using 44 174 single-nucleotide polymorphisms. Cows were classified into four breed groups: Holstein, Holstein crossbred, Holstein–Jersey crossbred and Jersey crossbred. The effect of genomic inbreeding was not significant on production traits, but inbred cows increased 3.0 days calving to conception interval (CCI) per 1% genomic inbreeding. On average, purebred Holstein cows produced 1119 kg milk, 22 kg fat and 30 kg protein more than Jersey crossbred cows. In the case of the fertility traits, Jersey crossbred cows had 45 days shorter CCI than purebred Holstein cows. A possible reason for the non-significant effects of genomic inbreeding of production and fertility traits is that these effects were evaluated in a crossbred population in which rates of heterozygosity would operate to some extent in the opposite direction to rates of genomic inbreeding.

A method for estimating the outer exposure of dairy cows to deoxynivalenol (DON) and zearalenone (ZEN) as a precondition for risk assessment based on inner exposure with toxin residue levels in blood and urine as indicators

DON and ZEN residues in the blood and urine of dairy cows can be used to predict the outer exposure to DON and ZEN expressed per kilogram diet for a risk evaluation based on comparisons to critical dietary concentrations. This method was used to evaluate the exposure of dairy cows from 12 farms located in Brandenburg, Germany, fed rations with unknown DON and ZEN concentrations (N = 244). The corresponding diet concentrations predicted by different methods from analyzed blood and urine samples varied significantly amongst farms from 0 to 1.6 mg/kg for DON and 0 to 3.0 mg/kg for ZEN at a reference dry matter content of 88% but independently of lactational state (post-partum vs. early lactation). This significant variation was noticed below the critical dietary DON concentration of 5 mg/kg, while the ZEN concentration in one farm exceeded the critical ZEN level of 0.5 mg/kg markedly. Predicted DON concentrations of rations increased with the proportion of maize silage, while the high ZEN concentration found in one farm was most likely related to a higher proportion of sugar beet pulp supposedly highly contaminated by ZEN. Exceeding the critical dietary ZEN concentration and significant variations in DON contents below the critical level was not related to performance, reproductive performance, and health-related traits of cows. For a more consistent evaluation of possible associations between the inner exposure of cows to DON and ZEN, more frequent longitudinal observations of both mycotoxin residue levels and performance and health traits are required.