Trait Convergence Research Articles

Functional characterization of luciferase in a brittle star indicates parallel evolution influenced by genomic availability of haloalkane dehalogenase.

Determining why convergent traits use distinct versus shared genetic components is crucial for understanding how evolutionary processes generate and sustain biodiversity. However, the factors dictating the genetic underpinnings of convergent traits remain incompletely understood. Here, we use heterologous protein expression, biochemical assays, and phylogenetic analyses to confirm the origin of a luciferase gene from haloalkane dehalogenases in the brittle star Amphiura filiformis . Through database searches and gene tree analyses, we also show a complex pattern of presence and absence of haloalkane dehalogenases across organismal genomes. These results first confirm parallel evolution across a vast phylogenetic distance, because octocorals like Renilla also use luciferase derived from haloalkane dehalogenases. This parallel evolution is surprising, even though previously hypothesized, because many organisms that also use coelenterazine as the bioluminescence substrate evolved completely distinct luciferases. The inability to detect haloalkane dehalogenases in the genomes of several bioluminescent groups suggests that the distribution of this gene family influences its recruitment as a luciferase. Together, our findings highlight how biochemical function and genomic availability help determine whether distinct or shared genetic components are used during the convergent evolution of traits like bioluminescence.

Integrative analyses of convergent adaptation in sympatric extremophile fishes

The evolution of independent lineages along replicated environmental transitions frequently results in convergent adaptation, yet the degree to which convergence is present across multiple levels of biological organization is often unclear. Additionally, inherent biases associated with shared ancestry and variation in selective regimes across geographic replicates often pose challenges for confidently identifying patterns of convergence. We investigated a system in which three species of poeciliid fishes sympatrically occur in a toxic spring rich in hydrogen sulfide (H2S) and an adjacent nonsulfidic stream to examine patterns of adaptive evolution across levels of biological organization. We found convergence in morphological and physiological traits and genome-wide patterns of gene expression among all three species. In addition, there were shared signatures of selection on genes encoding H2S toxicity targets in the mitochondrial genomes of each species. However, analyses of nuclear genomes revealed neither evidence for substantial genomic islands of divergence around genes involved in H2S toxicity and detoxification nor substantial congruence of strongly differentiated regions across population pairs. These non-convergent, heterogeneous patterns of genomic divergence may indicate that sulfide tolerance is highly polygenic, with shared allele frequency shifts present at many loci with small effects along the genome. Alternatively, H2S tolerance may involve substantial genetic redundancy, with non-convergent, lineage-specific variation at multiple loci along the genome underpinning similar changes in phenotypes and gene expression. Overall, we demonstrate variability in the extent of convergence across organizational levels and highlight the challenges of linking patterns of convergence across scales.

The evolutionary and ecological convergence of the raccoon and raccoon dog: A perfect storm of invasive species in Europe

AbstractThis paper initially describes the evolution of body shape in the raccoon (Procyon lotor) and the raccoon dog (Nyctereutes procyonoides). I explain how their similarities are the result of convergent evolution, the process by which unrelated organisms come to resemble one another in form, function, or both. This is the first examination of this phenomenon in these two species. In addition, I consider how their convergent traits and habits as omnivores have contributed to their astounding success as invasive species in Europe. Problems have arisen from these introductions, including impacts on prey species. Considering their broad adaptability as “stout” shaped mesocarnivores should aid in understanding their behavior and ecology, and could assist in addressing their management in Europe. Last, I offer suggestions for the control of raccoons given their compensatory versus additive mortality patterns, a practice that may also have implications for the regulation of raccoon dog populations.

Composition, divergence and variability: A comprehensive analysis of fish trait responses to connectivity

Connectivity, a fundamental concept in ecology, refers to the extent to which different habitats or ecosystems are interconnected through the movement of organisms, nutrients, and energy. Lateral hydrological connectivity (LHC) plays an especially critical role in shaping aquatic community organization in river-floodplain systems. However, a comprehensive understanding of various trait responses to LHC remains elusive. We characterized how attributes of fish community traits, specifically composition, divergence, and temporal variability respond to LHC in the Austrian-Hungarian floodplains of the Danube River using environmental DNA (eDNA) metabarcoding. Trait composition was quantified by community-level weighted means (CWM) as the degree of changes in trait responses along the LHC gradient from isolated oxbows to the main river. Divergence was measured using Rao’s quadratic functional diversity index and a null model approach to calculate standardized effect sizes (SES), with larger SES values indicating greater divergence and smaller values indicating convergence. Temporal variability, representing the degree of instability in community traits over time, was calculated using a functional beta diversity measure for multiple communities. Our findings revealed apparent compositional changes for many trait variables, highlighting the significance of LHC in shaping community functional diversity. Divergence patterns indicated that isolated habitats foster trait convergence presumably due to habitat filtering, whereas more connected areas promote trait divergence due to higher species richness and habitat availability. Temporal variability of traits associated with flow preference exhibited a hump-shaped relationship with LHC, suggesting intermediate connectivity zones are hotspots of ecological dynamism. The study suggests that examining composition, divergence, and temporal variability together provides a more complete understanding of trait responses to connectivity, stressing the importance of maintaining diverse connectivity levels in river-floodplain systems for effective conservation and ecosystem management.

Intraspecific variation in leaf morphology of three widespread woody species along climatic gradients

Abstract The variation and plasticity of leaf morphology plays a pivotal role in the response to environmental changes for plant individuals. Discovering the large-scale pattern of such variation can reveal plants' general adaptive strategies. We analyzed leaf morphology of three widespread woody species in the northern hemisphere using specimen data from the iDigBio and GBIF databases, to investigate the variations in the individual mean traits, in the inter- and intra-individual variability of traits, and in the allometry between traits, along climatic gradients. We found that larger and wider leaves were associated with warmer, wetter and low-sunlight habitats, while smaller but wider leaves are linked to higher wind speed, indicating the response of leaf morphology to multiple climate stresses. The inter-individual variation in leaf area was smaller in colder and windier conditions, suggesting the trait convergence among individuals under environmental filtering, while the intra-individual variation in leaf relative width was smaller in warmer habitats, indicating the similar growth optimum of leaves within one individual in more favorable conditions. Finally, the allometric exponent between leaf length (X-axis) and width (Y-axis) became greater under lower solar radiation and higher wind speed, while the squared correlation coefficient (r2) indicating phenotypic integration showed a decoupling trend under colder conditions, indicating that climate affected the variation tendency of leaf relative width during leaf enlargement. These results reveal the common patterns of leaf morphology responding to climate variation spatially and underscore the necessity to consider inter- and intra-individual variability when examining plant responses to environmental changes.

Species-specific functional trait responses in two species coexisting along a shore-to-inland dune gradient.

Coastal dunes are characterised by strong gradients of abiotic stress, typically increasing in severity from inland areas towards the shoreline. Thus, dune gradients represent unique opportunities to study intraspecific responses to environmental changes and to investigate which factors drive community change. This study aims to examine functional trait variation in two coexisting species in response to environmental changes along a dune gradient in NW Spain. Trait convergence was also investigated and compared between both ends of the gradient. We measured functional leaf traits related to plant efficiency in the use of light, water and nutrients, also possible stressors (salt content and pH) and availability of limiting resources (water and nutrients) in the soil. Most soil variables showed changes following a non-directional gradient. Differences in soil variables were site specific and depended on growth of the study species. Structural and functional traits depended on species and/or plant position on the gradient, except for effective quantum yield of PSII and leaf δ15N. The pattern of variation was mostly directional for reflectance indices related to leaf physiology. Multivariate analyses showed significant interspecific differences in the set of traits they exhibited along positions in the gradient. Species also differed in the combination of traits selected under given environmental conditions. Coexisting species display a specific set of traits that reflects different strategies to environmental stress. Our study highlights the overly simplistic nature of some previous studies that assume dune gradients are monotonically directional, without considering that these gradients may be differentially modified by species activity.

Is it all about size? Dismantling the integrated phenotype to understand species coexistence and niche segregation

Abstract Niche segregation is a mechanism by which competition between coexisting species is reduced. The ecological niche is a multidimensional space shaped by the conditions and resources that enable the existence of species. We conducted comprehensive univariate and multidimensional analyses of phenotypic traits encompassing morphology, functional performance and ecophysiology, to investigate which phenotypic traits contribute to niche segregation and overlap in two coexisting green lizard species. Our analyses revealed that the main driver of niche segregation was body size. However, when considering size‐corrected phenotypic spaces, ecophysiological traits were still distinct, with little overlap between co‐occurring species. Such differentiation was linked mainly to preferred temperature variance and water loss, highlighting the importance of thermal and hydric niche segregation. Some particular traits such as limb length also contributed to niche segregation being maintained in the morphological space, even when the effect of size was accounted for. Instead, the phenotypic space of functional performance traits (i.e. bite force, locomotor performance) showed the greatest overlap between the two species, thus, less niche segregation was observed, once size effects were removed. Therefore, functional performance traits contribute in a minor proportion to the effective niche segregation between the two species. In light of our results, the most adequate perspective to understand niche segregation in coexisting species is through a multidimensional approach in differentiated phenotypic spaces. Our dismantling of phenotypic traits allowed us to identify niche areas in which trait overlap occurs and others that promote niche segregation, considering or not size effects. Our results suggest that differential use of structural and functional niche space promotes effective niche segregation, potentially reducing direct competition between species. We highlight the importance of studies that include the combination of several phenotypic traits that, as a whole, provide insights to better understand the mechanisms by which coexisting organisms exploit differentiated resources in multidimensional spaces. Read the free Plain Language Summary for this article on the Journal blog.

Functional genomics and taxonomic insights into heavymetaltolerant novel bacterium Brevibacterium metallidurans sp. nov. NCCP-602T isolated from tannery effluent in Pakistan.

The strain designated NCCP-602T was isolated from tannery effluent, and displayed aerobic, gram-positive, rod-shaped cells that were characterized by oxidase negative, catalase positive, and non-motile features. The most favourable growth conditions were observed at a temperature of 30°C, pH 7.0, and NaCl concentration of 1% (w/v). It tolerated heavy metals at high concentrations of chromium (3600 ppm), copper (3300 ppm), cadmium (3000 ppm), arsenic (1200 ppm) and lead (1500 ppm). The results of phylogenetic analysis, derived from sequences of the 16S rRNA gene, indicated the position of strain NCCP-602T within genus Brevibacterium and showed that it was closely related to Brevibacterium ammoniilyticum JCM 17537T. Strain NCCP-602T formed a robust branch that was clearly separate from closely related taxa. A comparison of 16S rRNA gene sequence similarity and dDDH values between the closely related type strains and strain NCCP-602T provided additional evidence supporting the classification of strain NCCP-602T as a distinct novel genospecies. The polar lipid profile included diphosphatidylglycerol, glycolipid, phospholipids and amino lipids. MK-7 and MK-8 were found as the respiratory quinones, while anteiso-C15:0, iso-C15:0, iso-C16:0, iso-C17:0, and anteiso-C17:0 were identified as the predominant cellular fatty acids (> 10%). Considering the convergence of phylogenetic, phenotypic, chemotaxonomic, and genotypic traits, it is suggested that strain NCCP-602T be classified as a distinct species Brevibacterium metallidurans sp. nov. within genus Brevibacterium with type strain NCCP-602T (JCM 18882T = CGMCC1.62055T).

Convergent evolution of plant prickles by repeated gene co-option over deep time.

An enduring question in evolutionary biology concerns the degree to which episodes of convergent trait evolution depend on the same genetic programs, particularly over long timescales. In this work, we genetically dissected repeated origins and losses of prickles-sharp epidermal projections-that convergently evolved in numerous plant lineages. Mutations in a cytokinin hormone biosynthetic gene caused at least 16 independent losses of prickles in eggplants and wild relatives in the genus Solanum. Homologs underlie prickle formation across angiosperms that collectively diverged more than 150 million years ago, including rice and roses. By developing new Solanum genetic systems, we leveraged this discovery to eliminate prickles in a wild species and an indigenously foraged berry. Our findings implicate a shared hormone activation genetic program underlying evolutionarily widespread and recurrent instances of plant morphological innovation.

Convergent expansions of keystone gene families drive metabolic innovation in a major eukaryotic clade.

Many remarkable innovations have repeatedly occurred across vast evolutionary distances. When convergent traits emerge on the tree of life, they are sometimes driven by the same underlying gene families, while other times many different gene families are involved. Conversely, a gene family may be repeatedly recruited for a single trait or many different traits. To understand the general rules governing convergence at both genomic and phenotypic levels, we systematically tested associations between 56 binary metabolic traits and gene count in 14,710 gene families from 993 species of Saccharomycotina yeasts. Using a recently developed phylogenetic approach that reduces spurious correlations, we discovered that gene family expansion and contraction was significantly linked to trait gain and loss in 45/56 (80%) of traits. While 601/746 (81%) of significant gene families were associated with only one trait, we also identified several 'keystone' gene families that were significantly associated with up to 13/56 (23%) of all traits. These results indicate that metabolic innovations in yeasts are governed by a narrow set of major genetic elements and mechanisms.

The first fossil mantis lacewing (Neuroptera: Mantispidae) from Australia

Mantispidae is a cosmopolitan family of neuropteran insects, with approximately 395 extant species (Ohl et al., 2004; Jepson, 2015; Engel et al., 2018; Li et al., 2023). The family includes some of the most distinctive of lacewings owing to their convergent traits with mantises (Mantodea), complete with elongate prothoraces, prominent and large compound eyes on a moveable head, and powerful raptorial forelegs. Indeed, species of the family are referred to as mantis lacewings or mantid lacewings owing to the considerable similarity. As one would suspect, adults are predatory on a variety of small-bodied arthropods, typically hunting during dusk or night (Snyman et al., 2020). Larvae are also predators, although some are specialised for particular prey (e.g., subfamily Symphrasinae), while those of the nominate subfamily Mantispinae are ectoparasitic on spider egg cases (Redborg, 1998). Extant Mantispidae are found on every continent except Antarctica but show their highest diversity and geographical distribution in Australia and the Americas (Fig. 1A).

CHIRP-Seq: FoxP2 transcriptional targets in zebra finch brain include numerous speech and language-related genes.

Vocal learning is a rare, convergent trait that is fundamental to both human speech and birdsong. The Forkhead Box P2 (FoxP2) transcription factor appears necessary for both types of learned signals, as human mutations in FoxP2 result in speech deficits, and disrupting its expression in zebra finches impairs male-specific song learning. In juvenile and adult male finches, striatal FoxP2 mRNA and protein decline acutely within song-dedicated neurons during singing, indicating that its transcriptional targets are also behaviorally regulated. The identities of these targets in songbirds, and whether they differ across sex, development and/or behavioral conditions, are largely unknown. Here we used chromatin immunoprecipitation followed by sequencing (ChIP-Seq) to identify genomic sites bound by FoxP2 in male and female, juvenile and adult, and singing and non-singing birds. Our results suggest robust FoxP2 binding concentrated in putative promoter regions of genes. The number of genes likely to be bound by FoxP2 varied across conditions, suggesting specialized roles of the candidate targets related to sex, age, and behavioral state. We validated these binding targets both bioinformatically, with comparisons to previous studies and biochemically, with immunohistochemistry using an antibody for a putative target gene. Gene ontology analyses revealed enrichment for human speech- and language-related functions in males only, consistent with the sexual dimorphism of song learning in this species. Fewer such targets were found in juveniles relative to adults, suggesting an expansion of this regulatory network with maturation. The fewest speech-related targets were found in the singing condition, consistent with the well-documented singing-driven down-regulation of FoxP2 in the songbird striatum. Overall, these data provide an initial catalog of the regulatory landscape of FoxP2 in an avian vocal learner, offering dozens of target genes for future study and providing insight into the molecular underpinnings of vocal learning.

Wall-following - Phylogenetic context of an enhanced behaviour in stygomorphic Sinocyclocheilus (Cypriniformes: Cyprinidae) cavefishes.

With 75 known species, the freshwater fish genus Sinocyclocheilus is the largest cavefish radiation in the world and shows multiple adaptations for cave-dwelling (stygomorphic adaptations), which include a range of traits such as eye degeneration (normal-eyed, micro-eyed and eyeless), depigmentation of skin, and in some species, the presence of "horns". Their behavioural adaptations to subterranean environments, however, are poorly understood. Wall-following (WF) behaviour, where an organism remains in close contact with the boundary demarcating its habitat when in the dark, is a peculiar behaviour observed in a wide range of animals and is enhanced in cave dwellers. Hence, we hypothesise that wall-following is also present in Sinocyclocheilus, possibly enhanced in eyeless species compared to eye bearing (normal-/micro-eyed species). Using 13 species representative of Sinocyclocheilus radiation and eye morphs, we designed a series of assays, based on pre-existing methods for Astyanax mexicanus behavioural experiments, to examine wall-following behaviour under three conditions. Our results indicate that eyeless species exhibit significantly enhanced intensities of WF compared to normal-eyed species, with micro-eyed forms demonstrating intermediate intensities in the WF distance. Using a mtDNA based dated phylogeny (chronogram with four clades A-D), we traced the degree of WF of these forms to outline common patterns. We show that the intensity of WF behaviour is higher in the subterranean clades compared to clades dominated by normal-eyed free-living species. We also found that eyeless species are highly sensitive to vibrations, whereas normal-eyed species are the least sensitive. Since WF behaviour is presented to some degree in all Sinocyclocheilus species, and given that these fishes evolved in the late Miocene, we identify this behaviour as being ancestral with WF enhancement related to cave occupation. Results from this diversification-scale study of cavefish behaviour suggest that enhanced wall-following behaviour may be a convergent trait across all stygomorphic lineages.

Low replicability of testing the stress–dominance hypothesis using a trait convergence/divergence pattern

AbstractAimsEcological theories predict that assembly processes are driven by two deterministic forces: environmental filtering and limiting similarity. Their relative importance under different environmental conditions is still not completely obvious. Therefore, in this paper the predictions of the stress–dominance hypothesis (SDH) are tested in several sites.LocationKiskunság in Hungary, and Deliblato Sands in Serbia, Central Europe.MethodsWe studied a productivity gradient from open sand grasslands to meadows. The cover of species was estimated visually in plots with a size of 2 m × 2 m, resulting in 344 vegetation plots. Four trait values (height, seed mass, specific leaf area, and leaf size) were collected from field measurements and databases. The weighted median of interspecies distances in traits (a robust alternative to Rao's quadratic entropy) was used to determine functional diversity. The convergence and divergence of each trait in communities were evaluated by randomization tests, and effect sizes were calculated for each plot. We used hierarchical general additive models (HGAM) to determine whether the trend of effect sizes along the productivity gradient is the same in different sites.ResultsThe HGAM approach indicated that trait variations follow global trends but are influenced by site‐specific effects. The exception is seed mass, whose variation did not have any trend. Both environmental filtering and limiting similarity exist in the communities, and mainly a shift from trait convergence to a divergence pattern along the productivity gradient was observed.ConclusionThe results are mainly congruent with theoretical expectations, but the results from the different sites did not lead to the same conclusion. Although traits follow a global trend, the site effect is not negligible. Critical evaluation of SDH using trait convergence/divergence patterns for exploring rules of community assembly points out the weaknesses of this hypothesis. Therefore, alternative ways of studying trait patterns should be found to better understand community organization.

Elevation differentially shapes functional diversity patterns in understorey forest communities when considering intraspecific and interspecific trait variability

AbstractQuestionsWhat is the relative importance of interspecific and intraspecific trait variation and their covariation in the herb layer of European temperate beech forests, and how do they vary with elevation? Is there evidence of interspecific trait convergence at higher elevations, as postulated by the habitat‐filtering hypothesis, and is this convergence enhanced or counteracted by intraspecific variation?LocationNational Park “Foreste Casentinesi, Monte Falterona and Campigna”, Italy.MethodsWe measured four functional traits – plant height, specific leaf area (SLA), leaf dry matter content (LDMC) and leaf area – across 775 individuals from 60 herb‐layer species in 28 forest plots (10 m × 10 m) spanning an 800 m elevation gradient. For each trait in each plot, we computed community‐weighted means (CWMs) and the standardized effect size of functional diversity (SES‐FD). We decomposed total trait variation into its interspecific and intraspecific components, and their covariation. We run linear regression models to assess the impact of elevation on these three components of functional variation. Lastly, we investigated whether higher elevation communities exhibited lower SES‐FD, indicating functional convergence that could hint to a stronger habitat filtering.ResultsInterspecific trait variation was more important than the intraspecific counterpart both for CWMs and SES‐FD. Only CWMs calculated for plant height and LDMC showed a significant relationship with elevation. Low‐elevation communities featured taller, more‐conservative species, whereas shorter, faster‐growing species were more common at higher elevations. SES‐FD remained consistently negative for species turnover and total variation, suggesting stable functional convergence across the gradient.ConclusionsOur findings suggest that interspecific and intraspecific trait variability can be decoupled along an elevation gradient, stressing the importance of individually considering each component of trait variation when studying community composition. Elevation significantly influenced various components of plant community trait variation, with habitat filtering playing a substantial role in selecting plants with specific traits across elevations.

Coadaptation of coexisting plants enhances productivity in an agricultural system

Growing crops in more diverse crop systems (i.e., intercropping) is one way to produce food more sustainably. Even though intercropping, compared to average monocultures, is generally more productive, the full yield potential of intercropping might not yet have been achieved as modern crop cultivars are bred to be grown in monoculture. Breeding plants for more familiarity in mixtures, i.e., plants that are adapted to more diverse communities (i.e., adaptation) or even to coexist with each other (i.e., coadaptation) might have the potential to sustainably enhance productivity. In this study, the productivity benefits of familiarity through evolutionary adaptation and coevolutionary coadaptation were disentangled in a crop system through an extensive common garden experiment. Furthermore, evolutionary and coevolutionary effects on species-level and community-level productivity were linked to corresponding changes in functional traits. We found evidence for higher productivity and trait convergence with increasing familiarity with the plant communities. Furthermore, our results provide evidence for the coevolution of plants in mixtures leading to higher productivity of coadapted species. However, with the functional traits measured in our study, we could not fully explain the productivity benefits found upon coevolution. Our study investigated coevolution among randomly interacting plants and was able to demonstrate that coadaptation through coevolution of coexisting species in mixtures occurs and promotes ecosystem functioning (i.e., higher productivity). This result is particularly relevant for the diversification of agricultural and forest ecosystems, demonstrating the added value of artificially selecting plants for the communities they are familiar with.

Defoliation, trampling and nutrient return differentially influence grassland productivity by modulating trait-dependent plant community composition: insights from a simulated grazing experiment.

Ungulate grazing involves multiple components, including defoliation, dung and urine return, and trampling, which supply offsetting or synergistic effects on plant community composition and productivity (ANPP), but these effects have not been fully studied. Plant functional traits may reflect the response of plants to disturbance and their impact on ecosystem functions. Species turnover and intraspecific trait variation (ITV) are important drivers of community trait composition. We conducted a simulated grazing experiment in a steppe grassland in northern China to examine the effects of defoliation, dung and urine return, and trampling on community-weighted mean (CWM), functional diversity (FD) and ANPP, and to disentangle the roles of species turnover and ITV in driving these changes. We found that defoliation had a dominant effect on CWMs and FDs of all four traits through species turnover and ITV, respectively, resulting in a convergence of traits towards as more resource-acquisitive strategy. Dung-urine return resulted in more resource-acquisitive community traits mainly through ITV, whereas there were no significant effects on FDs except for leaf C/N. Trampling increased CWM of leaf dry matter content primarily driven by ITV, and had no significant effect on FDs. Furthermore, our simulated grazing positively affected ANPP, primarily due to nutrient additions from dung and urine, and ITV largely explained the variation in ANPP. These findings highlight the multifaceted effects of grazing components on community structure and ANPP, and the significance of ITV in shaping grassland plant communities and productivity.

Functional convergence underground? The scale‐dependency of community assembly processes in European cave spiders

AbstractAimQuantifying the relative contribution of environmental filtering versus limiting similarity in shaping communities is challenging because these processes often act simultaneously and their effect is scale‐dependent. Focusing on caves, island‐like natural laboratories with limited environmental variability and species diversity, we tested: (i) the relative contribution of environmental filtering and limiting similarity in determining community assembly in caves; (ii) how the relative contribution of these driving forces changes along environmental gradients.LocationEurope.Time periodPresent.Major taxa studiedSubterranean spiders.MethodsWe used data on distribution and traits for European cave spiders (n = 475 communities). We estimated the trait space of each community using probabilistic hypervolumes, and obtained estimations of functional richness independent of the species richness of each community via null modelling. We model functional diversity change along environmental gradients using generalized dissimilarity modelling.ResultsSixty‐three percent of subterranean spider communities exhibited a prevalence of trait underdispersion. However, most communities displayed trait dispersion that did not depart significantly from random, suggesting that environmental filtering and limiting similarity were both exerting equally weak or strong, yet opposing influences. Overdispersed communities were primarily concentrated in southern latitudes, particularly in the Dinaric karst, where there is greater subterranean habitat availability. Pairwise comparisons of functional richness across caves revealed these effects to be strongly scale‐dependent, largely varying across gradients of cave development, elevation, precipitation, entrance size and annual temperature range. Conversely, geographical distance weakly affected trait composition, suggesting convergence in traits among communities that are far apart.Main conclusionsEven systems with stringent environmental conditions maintain the potential for trait differentiation, especially in areas of greater habitat availability. Yet, the relative influence of environmental filtering and limiting similarity change with scale, along clear environmental gradients. The interplay of these processes may explain the assembly of species‐poor subterranean communities displaying high functional specialization.

Convergent genomic signatures associated with vertebrate viviparity

BackgroundViviparity—live birth—is a complex and innovative mode of reproduction that has evolved repeatedly across the vertebrate Tree of Life. Viviparous species exhibit remarkable levels of reproductive diversity, both in the amount of care provided by the parent during gestation, and the ways in which that care is delivered. The genetic basis of viviparity has garnered increasing interest over recent years; however, such studies are often undertaken on small evolutionary timelines, and thus are not able to address changes occurring on a broader scale. Using whole genome data, we investigated the molecular basis of this innovation across the diversity of vertebrates to answer a long held question in evolutionary biology: is the evolution of convergent traits driven by convergent genomic changes?ResultsWe reveal convergent changes in protein family sizes, protein-coding regions, introns, and untranslated regions (UTRs) in a number of distantly related viviparous lineages. Specifically, we identify 15 protein families showing evidence of contraction or expansion associated with viviparity. We additionally identify elevated substitution rates in both coding and noncoding sequences in several viviparous lineages. However, we did not find any convergent changes—be it at the nucleotide or protein level—common to all viviparous lineages.ConclusionsOur results highlight the value of macroevolutionary comparative genomics in determining the genomic basis of complex evolutionary transitions. While we identify a number of convergent genomic changes that may be associated with the evolution of viviparity in vertebrates, there does not appear to be a convergent molecular signature shared by all viviparous vertebrates. Ultimately, our findings indicate that a complex trait such as viviparity likely evolves with changes occurring in multiple different pathways.

The evolution of entomopathogeny in nematodes.

Understanding how parasites evolved is crucial to understand the host and parasite interaction. The evolution of entomopathogenesis in rhabditid nematodes has traditionally been thought to have occurred twice within the phylum Nematoda: in Steinernematidae and Heterorhabditidae families, which are associated with the entomopathogenic bacteria Xenorhabdus and Photorhabdus, respectively. However, nematodes from other families that are associated with entomopathogenic bacteria have not been considered to meet the criteria for "entomopathogenic nematodes." The evolution of parasitism in nematodes suggests that ecological and evolutionary properties shared by families in the order Rhabditida favor the convergent evolution of the entomopathogenic trait in lineages with diverse lifestyles, such as saprotrophs, phoretic, and necromenic nematodes. For this reason, this paper proposes expanding the term "entomopathogenic nematode" considering the diverse modes of this attribute within Rhabditida. Despite studies are required to test the authenticity of the entomopathogenic trait in the reported species, they are valuable links that represent the early stages of specialized lineages to entomopathogenic lifestyle. An ecological and evolutionary exploration of these nematodes has the potential to deepen our comprehension of the evolution of entomopathogenesis as a convergent trait spanning across the Nematoda.