Landrace Research Articles

Isolation, Molecular Characterisation, and Pathogenicity Analysis of a Novel Recombinant ALV-J Strain Isolated From Chinese Hetian Chickens.

Avian leukosis virus subgroup J (ALV-J) primarily affects poultry, particularly chickens, leading to tumourigenesis and immunosuppression, which results in substantial economic losses. It is important to note that ALV-J is commonly found in indigenous chicken breeds in China, and the virus's vertical transmission characteristics present a significant threat to the preservation of local chicken breeds. The study aimed to investigate the characteristics and effects of the recombinant ALV-J strain LY2021J, with a focus on its genetic composition and its potential influence on virulence and pathogenicity. LY2021J was isolated using DF-1 cells and validated by enzyme-linked immunosorbent assay (ELISA) and IFA. The proviral genome was amplified using segmented PCR and then spliced together using DNASTAR software. Genome-wide genes, including gag, pol, gp85, and long terminal repeat (LTR), were compared. Recombination sites were analysed using RDP5 and SimPlot software. Pathogenicity was evaluated by monitoring symptoms and conducting examinations on SPF chickens. The outbreak of ALV-J in China has caused significant economic losses in the poultry industry. Although largely controlled in white-feather broilers and egg-laying chickens, ALV-J has spread to yellow-feather broilers and local breeds. A strain, LY2021J, isolated from Hetian chickens, showed lower mortality despite severe dysplasia. Genetic analysis revealed high similarity between LY2021J and the Chinese strains JS14NT01 and NX0101, suggesting a shared origin. Recombination with strain ev-1 and specific 3' UTR deletions may explain LY2021J's reduced virulence. Continued monitoring and prevention strategies are essential to mitigate ALV-J's impact.

Lessons to learn for better safeguarding of genetic resources during tree pandemics: The case of ash dieback in Europe

Ash dieback (ADB) has been threatening populations of European ash (Fraxinus excelsior & F. angustifolia) for more than three decades. Although much knowledge has been gathered in the recent past, practical conservation measures have been mostly implemented at local scale. Since range contraction in both ash species is likely to be exacerbated already in the near future by westward expansion of the emerald ash borer and climate change, systematic conservation frameworks need to be developed to avoid long-term population-genetic consequences and depletion of genomic diversity. In this article, we address the advantages and obstacles of conservation approaches aiming to conserve genetic diversity in situ or ex situ during tree pandemics. We are reviewing 47 studies which were published on ash dieback to unravel three important dimensions of ongoing conservation approaches or perceived conservation problems: i) conservation philosophy (i.e. natural selection, resistance breeding or genetic conservation), ii) the spatial scale (ecosystem, country, continent), and iii) the integration of genetic safety margins in conservation planning. Although nearly equal proportions of the reviewed studies mention breeding or active conservation as possible long-term solutions, only 17 % consider that additional threats exist which may further reduce genetic diversity in both ash species. We also identify and discuss several knowledge gaps and limitations which may have limited the initiation of conservation projects at national and international level so far. Finally, we demonstrate that there is not much time left for filling these gaps, because European-wide forest health monitoring data indicates a significant decline of ash populations in the last 5 years.

<b>Performance of Candidate Varieties of Basmati Rice in Uniform Yield Trials</b>

The primary focus of rice breeding research is now on developing high-yielding rice varieties with early maturing and physio-chemical features, such as improved cooking quality, aroma, and extra-long grain. This shift in focus is driven by the growing global demand for high-quality rice. Using traditional breeding methods to trait pyramid these extremely important traits while maintaining yield and quality is a challenging task. Good grain quality(aromatic), fertilizer responsiveness, and high-yielding varieties can help the farmers in Pakistan to increase their revenue despite global population growth and changing international market patterns. At the Rice Research Institute, Kala Shah Kaku (RRI KSK), new, improved, high-yielding, extra-long grain lines with the qualities of early maturity, small stature, and good cooking with aroma are being developed through traditional breeding methods. The present study aimed to assess the genetic variability of these lines in terms of paddy yield and to discover superior high-yielding cultivars suitable for widespread cultivation. There were notable variations in paddy yield among the different entries in the pooled analysis. The highest average paddy yield (5010 Kg/ha) was seen in entry 10640-10-1-1-1, followed by entry 10684-3-1-2 (4990 Kg/ha) and PK 10434-6-2-1 (4550 Kg/ha) and suggested for general cultivation based on their mean paddy yield. A strong positive correlation was seen between the grain thickness grading of over 2.2 mm and the number of panicles per plant. The overall quality of the Uniform Yield Trials of Fine rice samples can be reported as excellent for PK 10306-15-5, PK PB-8 and PK 10678-2-1-1 over check Basmati-515. There will be a simultaneous increase in grain yield with improvements in these qualities.

Evaluating the performance of traditional paddy (Oryza sativa L.) landraces under floating cultivation techniques in southern Tamil Nadu

Floating rice cultivation, a novel method, is essential for boosting crop yields and resilience amid climate change using flood-prone and water-saturated environments. This approach leverages aquatic resources such as lakes and reservoirs, enhancing agricultural productivity and ecosystem health. This study was conducted in 2023 at the Department of Agronomy, Agricultural College and Research Institute, Madurai to assess the suitability and production potential of cultivating traditional paddy varieties viz., Chinnar and Chithiraikar under floating conditions. Various substrates including soil, coir pith, wooden chips, sugarcane trash, thermocol, leaf compost, and jute bags were levelled out over paddy seeding trays (60 × 30 cm) and placed over bamboo rafts (120 × 120 cm) which served as the float base. Various parameters viz., germination (%), leaf area index (LAI), vigour index, plant population, dry matter production (g/m2), grain yield (kg/ha) and straw yield (kg/ha) were analysed. Results revealed that better crop establishment and crop growth were highly influenced by nursery and conditions with coconut coir outperforming other substrates. However, findings indicated that thermocol substrate is more productive in realizing higher yield attributes and yield (9.83 g/plant, 9.90 g/plant, respectively) of both Chinnar and Chithiraikar landraces of rice. Thus, floating rice cultivation offers a sustainable way to enhance productivity and adaptability, with traditional paddy varieties suitable for soilless media, though further research is needed to optimize its effectiveness.

Genetic determinism of sensitivity to environmental challenges using daily feed intake records in three lines of pigs.

In pig breeding, environmental challenges can affect the welfare and productivity of animals. Resilient animals have the capacity to be minimally affected by these environmental challenges. Understanding the genetic basis of sensitivity to these environmental challenges is crucial for selecting more resilient animals, thereby enhancing welfare and productivity. The aims of this study were to: (1) estimate the probability of the occurrence of an unrecorded environmental challenge at a given day using daily feed intake (DFI) data, and (2) evaluate the genetic determinism of environmental sensitivity in three pig lines bred in real selection conditions. Data comprised of 100,799, 186,247, and 304,826 DFI records from 1,618, 2,517, and 3,788 Landrace (LA), Large White (LW) and Piétrain (PI) male pigs, respectively. The pedigree included 3,730, 5,649, and 9,293 animals for LA, LW, and PI, respectively. The probabilities of the occurrence of an unrecorded environmental challenge at a given day were estimated via a mixture model. The probabilities (p) of being "high CV days" were then taken as reference and used in genetic analysis as an environmental descriptor to describe the environment. DFI records were analysed using two linear models: a linear reaction norm animal model (RNAM) and the animal model. (Co)variance components were estimated using average-information restricted maximum likelihood (AI-REML). The means of the probabilities of the occurrence of an environmental challenge for LA, LW, and PI were 0.24, 0.10, and 0.22, respectively, indicating that the probability of an environmental challenge was low for most of the days. The genetic correlations between the intercept and the slope obtained from the RNAM for LA, LW, PI were -0.52, 0.06, and -0.36, respectively. These findings suggest that selecting hypothetically for decreased DFI in non-stressful conditions would result in pigs with increased DFI in stressful conditions in the LA and PI lines, whereas it would have a minor impact on the environmental sensitivity of LW. The proportion of resilient animals for LA, LW, and PI was 75.0, 74.2, and 72.2%, respectively, implying that most of the animals were resilient. The study demonstrated that the slope of DFI is heritable and can effectively be used as an indicator of sensitivity to environmental challenges. These results are valuable in improving the resilience of livestock species to environmental challenges through genetic selection.

Multi-omics approaches for abiotic stress tolerance in rice (Oryza sativa L.)

Rice, one of the world's staple crops, faces significant challenges due to abiotic stresses such as drought, salinity and extreme temperatures, which threaten global food security. Traditional breeding methods have limitations in developing stress-tolerant rice varieties within a short time frame. Thus, there is a growing interest in employing multi-omics approaches, integrating genomics, transcriptomics, proteomics, metabolomics and epigenomics, to unravel the complex molecular mechanisms underlying abiotic stress tolerance in rice. In contrast to a single-omics method, this combination of multi-dimensional approaches provides an extensive understanding of cellular dynamics under abiotic stress conditions. This review discusses recent advances in multi-omics technologies and their applications in dissecting the molecular responses of rice to abiotic stresses. It highlights the integration of multi-omics data to identify critical genes, pathways and regulatory networks involved in stress responses and tolerance mechanisms.Furthermore, it explores the potential of multi-omics-assisted breeding strategies for developing stress-tolerant rice varieties with improved agronomic traits. The challenges and future perspectives in utilizing multi-omics approaches to enhance rice's abiotic stress tolerance are also discussed. Overall, multi-omics approaches offer a comprehensive platform to understand the molecular basis of stress tolerance in rice and accelerate the development of resilient varieties to ensure global food security.

Gender-Specific DNA Methylation Profiles Associated with Adult Weight in Hezuo Pigs

The Hezuo pig, an important native Tibetan breed in China, exhibits differences in adult body weight, with females typically heavier than males. The underlying mechanisms for this disparity remain unclear. DNA methylation changes are known to influence animal growth and development and regulate Hezuo pig growth by altering gene expression related to these processes, thus differentially affecting adult body weight between genders. This study conducted DNA methylation analysis and expression profiling using pituitary tissues from male and female Hezuo pigs at 3 and 8 months old (M3M, M3F, M8M, and M8F). In total 346, 795, 371, and 839 differentially methylated genes (DMGs) were identified in the M3M vs. M3F, M3F vs. M8F, M3M vs. M8M, and M8M vs. M8F groups, respectively. The comparative analysis of differentially methylated regions (DMRs) genes and DEGs (differentially expressed regions) revealed that key genes involved in growth, hormone secretion, and the hypothalamic-pituitary-gonadal axis are primarily enriched in signaling pathways such as PI3K-Akt, Hippo, and adrenergic. Further analysis combining methylation and transcriptomics identified five candidate methylated genes (CCL2, MYL2, GST, CTSH, and MCH) linked to adult body weight in Hezuo pigs. Additionally, the correlation analysis suggested that these genes influence growth and development in boars and sows by regulating the secretion and synthesis of related hormones, leading to heavier weights in females. In conclusion, variations in adult body weight between male and female pigs may stem from the impact of DNA methylation on gene expression related to growth and development. These findings offer new insights into the regulatory mechanisms of DNA methylation during weight gain in Hezuo pigs.

Studies of genetic diversity and genome-wide association for vitamin C content in lettuce (Lactuca sativa L.) using high-throughput SNP arrays.

Lettuce (Lactuca sativa L.) is a source of beneficial compounds though they are generally present in low quantities. We used 40K Axiom and 9K Infinium SNP (single nucleotide polymorphism) arrays to (i) explore the genetic variability in 21 varieties and (ii) carry out genome-wide association studies (GWAS) of vitamin C content in21 varieties and a population of 205 plants from the richest variety in vitamin C ('Lechuga del Pirineo'). Structure and phylogenetic analyses showed that the group formed mainly by traditional varieties was the most diverse, whereas the red commercial varieties clustered together and very distinguishably apart from the rest. GWAS consistently detected, in a region of chromosome 2, several SNPs related to dehydroascorbic acid (a form of vitamin C) content using three different methods to assess population structure, subpopulation membership coefficients, multidimensional scaling, and principal component analysis. The latter detected the highest number of SNPs (17) and the most significantly associated, 12 of them showing a high linkage disequilibrium with the lead SNP. Among the 84 genes in the region, some have been reported to be related to vitamin C content or antioxidant status in other crops either directly, like those encoding long non-coding RNA, several F-box proteins, and a pectinesterase/pectinesterase inhibitor, or indirectly, like extensin-1-like protein and endoglucanase 2 genes. The involvement of other genes identified within the region in vitamin C levels needs to be further studied. Understanding the genetic control of such an important quality trait in lettuce becomes very relevant from a breeding perspective.

Construction of new genomes of columnar apple trees in the Russian research institute of fruit crop breeding

Relevance. The article presents data on the creation of new genotypes of columnar apple trees based on interval crossings of the 2x × 4x type using traditional breeding methods and elements of accelerated assessment of hybrid forms using cytoembryological and molecular genetic methods.Results. Cytological assessment of seedlings obtained from the studied interval crossings of six columnar apple varieties and the selected columnar form 29-35-123 with tetraploid forms 30-47-88 and 25-37-45, which are donors of diploid gametes, showed that seedlings with a triple set of chromosomes prevail and their share is 83.0%. The share of diploids accounts for 17.0%. A comparative assessment of the ploidy of offspring showed that the difference between the yield of triploid seedlings in the offspring of families where different donors of diploid gametes (25-37-45 and 30-47-88) were taken as paternal forms is insignificant. From the tetraploid 30-47-88, 81.7% of triploid offspring were obtained, from 25-37-45 — 91.3%.The data of molecular genetic analysis confirm that in combinations where both parents have the scab immunity gene, the yield of immune seedlings is high (70,7%) and corresponds to the splitting on this basis in a ratio of 3:1. n families where only one of the parents carries the Rvi6 gene in its genotype (Garland × 25-37-45, 29-35-123 × 25-37-45, Moscow necklace × 30-47-88 and Constellation × 25-37-45) immune seedlings were less common (52%). A unique combination of columnarity, the Rvi6 gene and a triple set of chromosomes in one genotype is characteristic of 23.1% of seedlings.

Advancing equine genomics: the development of a high density Axiom_Ashwa SNP chip for Indian horses and ponies.

The unique horse and pony breeds of India are declining at an alarming rate. These horses have been integral to the Indian culture and customs for centuries and represent a valuable genetic resource. It is imperative to harness the potential of this equine genetic resource that urgently needs conservation. The study highlights the design and development of a high density SNP array, the Axiom_Ashwa to aid in the genetic analysis and conservation efforts for Indian horse and pony breeds. With 613,950 SNPs, this chip offers extensive genome coverage having an average inter-marker distance of 4kb. The Axiom_Ashwa has been validated on a larger set of diverse indigenous samples as well as Thoroughbreds, demonstrating a high call rate of 99.4% and robustness for genotyping indigenous breeds. Linkage disequilibrium (LD) analysis showed higher average LD in Indian breeds compared to exotic breeds, suggesting a limited effective population size and recent bottlenecks. Phylogenetic and population stratification analyses using PCA and DAPC clearly distinguished horses, ponies and Thoroughbreds, confirming the efficacy of the Axiom_Ashwa chip. These findings underscore the urgent need for conservation efforts for Indian horse breeds, which have experienced significant drop in population size. The Axiom_Ashwa SNP chip offers advantages such as cost-effectiveness and high throughput, providing a more accurate genetic representation of Indian horses.

The Comparison and Brewing Value of Saaz Hop Pedigree

The well-known hop variety, Saaz, which gives the Pilsner lager beer its characteristic hop aroma, may be threatened by climate change in the future. Therefore, new Saaz-related hop varieties, including Saaz Late, Saaz Brilliant, Saaz Comfort, and Saaz Shine, were recently bred. A comparison study was carried out to evaluate whether these varieties are acceptable for traditional lagers. For this purpose, sensorial and chemical analyses of hops and related beers, namely, an analysis of hop resins and oils, were performed. Sensory profiles of Saaz varieties are very similar (fine, hoppy aroma; floral; herbal), except for Saaz Comfort, which has a slightly higher aroma intensity, and Saaz Shine, which has the most noticeable fruity scent, with traces of citrus. The chemical profiles are also very similar, with α-humulene, β-pinene, (E)-β-farnesene, β-caryophyllene, and myrcene being the most abundant. Decoction mashing and kettle hopping technology with bottom fermentation show that the compared varieties result in very similar lager beers with hoppy, floral, herbal, fruity, and spicy aromas. Typical hop oils include farnesol, linalool, methyl geranate, β-pinene, and limonene. The high concentration of farnesol in beer correlates with the concentrations of (E)-β-farnesene and farnesol in hops. New Saaz varieties are widely used to produce Pilsner lager without affecting the traditional sensory aroma of this widespread style. Varieties have a higher yield of approximately 25% and bitter acid concentrations of approximately 15%, with Saaz Comfort comprising approximately 100%. Furthermore, the concentration of hop oils is approximately 40% higher in Saaz Shine than a traditional Saaz variety. Moreover, Saaz Shine and Saaz Comfort have very good resistance to drought, which is an important property from a climate change perspective.

Integrated analysis of muscle lncRNA and mRNA of Chinese indigenous breed Ningxiang pig in four developmental stages

Meat and its derivatives serve as crucial sources of protein, vitamins, minerals, and other essential nutrients for humans. Pork stands as China’s primary animal-derived food product consumed widely across diverse dietary structures; evaluating intramuscular fat content becomes pivotal in assessing its quality standards. Nonetheless, the intricate molecular mechanisms governing intramuscular fat deposition remain elusive. Our study utilized sequencing technology to scrutinize longitudinal development stages within Ningxiang pig’s longest dorsal muscles aiming to unravel these underlying mechanisms. In three distinct comparisons (30d vs. 90d, 90d vs. 150d and 150d vs. 210d) there were 578, 1,000 and 3,238 differentially expressed mRNA, along with 16, 158 and 85 lncRNAs were identified. STEM analysis unveiled six enriched model profiles for lncRNAs while seven such profiles emerged for mRNAs; notably, multiple shared model profiles existed between both RNA types. Enriched analysis highlighted numerous genes from mRNA profile8 and lncRNA profile7 significantly associated with pathways linked to fat deposition. Weight Gene Co-Expression Network Analysis (WGCNA) revealed that differential expression modules (DMEs) & differential expression lncRNAs primarily clustered within cyan, dark slate blue and pale turquoise modules. Furthermore, target genes PKD2 (MSTRG21592.MTRSG8859 and MTRSG18175), COL5A1 (MTRSG9969 and MTRSG180) and SOX13 (MTRSG21592 and MTRSG9088) as core components all intricately tied into processes related to fat deposition. This study lays the groundwork for deeper exploration into the molecular mechanisms underlying LDM fat deposition traits, and it also presents candidate genes for future molecular marker-assisted breeding.

Comparative analysis of English and American humor in literary discourse

The article studies humor as a type of comic in the literary discourse. The composition of the traditional comic variety paradigm is determined, including humor, irony, satire, and sarcasm. The leading techniques and linguistic/speech means of representing and enhancing the comic effect in the literary discourse are described. The essentials of their complex description are considered. The concept of humor is analyzed as a linguistic and sociocultural phenomenon in the literary discourse. Attention is focused on investigating the peculiarities of British and American humor. The authors trace the differences between English and American humor in domestic and foreign linguistic and literary sources. The peculiarities of the linguistic criterion itself are revealed, which is essential in linguists' identification and study of humor as a kind of comic. The leading classifications of verbal means, forms, and techniques of humorous wit in the literary discourse are highlighted. Humor among the English tends to manifest itself mainly in times of personal hardship and to be largely self-directed. The most crucial feature of American humor is slang, which is peculiar only to Americans.

Insights into trait-association of selection signatures and adaptive eQTL in indigenous African cattle

BackgroundAfrican cattle represent a unique resource of genetic diversity in response to adaptation to numerous environmental challenges. Characterising the genetic landscape of indigenous African cattle and identifying genomic regions and genes of functional importance can contribute to targeted breeding and tackle the loss of genetic diversity. However, pinpointing the adaptive variant and determining underlying functional mechanisms of adaptation remains challenging.ResultsIn this study, we use selection signatures from whole-genome sequence data of eight indigenous African cattle breeds in combination with gene expression and quantitative trait loci (QTL) databases to characterise genomic targets of artificial selection and environmental adaptation and to identify the underlying functional candidate genes. In general, the trait-association analyses of selection signatures suggest the innate and adaptive immune system and production traits as important selection targets. For example, a large genomic region, with selection signatures identified for all breeds except N’Dama, was located on BTA27, including multiple defensin DEFB coding-genes. Out of 22 analysed tissues, genes under putative selection were significantly enriched for those overexpressed in adipose tissue, blood, lung, testis and uterus. Our results further suggest that cis-eQTL are themselves selection targets; for most tissues, we found a positive correlation between allele frequency differences and cis-eQTL effect size, suggesting that positive selection acts directly on regulatory variants.ConclusionsBy combining selection signatures with information on gene expression and QTL, we were able to reveal compelling candidate selection targets that did not stand out from selection signature results alone (e.g. GIMAP8 for tick resistance and NDUFS3 for heat adaptation). Insights from this study will help to inform breeding and maintain diversity of locally adapted, and hence important, breeds.

Analysis of Mannose-Binding Lectin Protein and mRNA Levels on Selected Chicken Breeds in South Africa.

Mannose-binding lectin (MBL) is a key component of the innate immune system that plays a crucial role in binding to the microbial sugar surface to recognize and eliminate pathogens by activating the complement system. To detect and quantify the MBL protein concentration and chicken MBL expression in selected chicken breeds in South Africa. Forty-five blood samples from three indigenous chicken breeds, Ovambo (OV=9), Venda (VD=9) and Potchefstroom Koekoek (PK=9), and two exotic chicken breeds, Rhode Island Red (RIR=9) and Lohmann Brown (LB=9), were used for MBL protein concentration using enzyme-linked immunosorbent assay (ELISA) techniques. Also 20 liver samples from symptomatic two indigenous chicken breeds, OV (5) and PK (5), and two exotic chicken breeds, RIR (5) and LB (5), were used for MBL expression using quantitative polymerase chain reaction (qPCR) techniques. A general linear model was done using Tukey's multiple comparison post hoc test. The findings revealed MBL protein concentration from 5.26 to 18.56µg/mL. The LB breed had the lowest mean 6.40±0.80µg/mL, whereas the PK breed had the highest mean MBL concentration of 17.70±0.24µg/mL of MBL protein concentration. At 12, 25 and 35 weeks, the MBL proteins of OV, VD, PK, RIR and LB varied significantly at p≤0.05. The mRNA MBL expression of OV and LB breeds showed a 1-fold decrease in MBL expression, while RIR showed a 2-fold increase in MBL expression, and the PK showed more than a 3-fold increase in MBL expression relative to the control. The least-squares means for OV, LB, PK and RIR mRNA MBL expression were 0.54±0.19, 0.68±0.30, 4.46±2.76 and 2.89±0.19µg/mL, respectively. MBL protein was detected and quantified with distinct differences in concentration and expression levels at the presence of mycoplasma gallisepticum among the sampled South African chicken breeds. This highlights the genetic diversity of MBL as a tool for disease prevention in South African chicken breeds.

Physicochemical and Structural Validation of Myxovirus Resistance 1 (Mx1) Protein of Three Strains of the Nigerian Indigenous (<i>Gallus Gallus domesticus</i>) and Exotic Chickens

This research was conducted on three strains of Nigerian Indigenous (<i>gallus gallus domesticus</i>) and Noiler (exotic) chickens. It examined the physicochemical and structural validation of Myxovirus resistance 1 (Mx1) protein on the three strains of Nigerian indigenous (naked neck, frizzle feather, normal feather) and noiler (exotic) chickens and also the prediction of the Physicochemical Analysis of protein. Nucleotide sequence were retrieved from National Center for Bio-Technology Information (NCBI) database and subjected to multiple sequence alignment, prediction of the physicochemical analysis of protein was done in the ProtParam web server. Modeling of 3D structural validation, Swiss modeling and Statistical analysis were all carried out. Software was used to align the sequences to find any Single Nucleotide Polymorphism (SNPS). The result of physicochemical analysis showed that the properties of the Mx1 protein fell within accepted threshold and predicted that the proteins were generally related. To validate the structure obtained from modeling, the obtained PDB files were ran on the Pro-check validation server and obtained Errat and Ramachandran plots. The study elucidates the unique features and potential functional implications of Mx1 protein across different strains of Nigerian indigenous and exotic chickens. This knowledge can inform the development of strategies to improve disease resistance in local chicken populations through selective breeding or genetic manipulation. Comparing the Mx1 protein among different strains of Nigerian indigenous chickens can reveal evolutionary adaptations and provide valuable information for understanding the molecular basis of immune defense mechanisms in poultry. Understanding the physicochemical properties and structural dynamics of Mx1 protein contributes to the broader understanding of innate immune responses in indigenous chicken breeds, offering insights into their disease resistance and adaptation mechanisms.

Characterization and Evaluation of Taihe Black-Boned Silky Fowl Eggs Based on Physical Properties, Nutritive Values, and Flavor Profiles.

Taihe black-boned silky fowl (TS) is a native chicken breed in China with more than 2000 years of history. The present study aimed to characterize and evaluate the physical, nutritional, and flavor properties of TS eggs with a comparison to two other commercial breeds. Eggs from TS (n = 60) crossbred black-boned silky fowl (CB, n = 60) and Hy-line Brown (HL, n = 60) were used for physicochemical analysis. The evaluation system was divided into four parts based on nutrient and flavor profiles: protein and amino acids, lipids and fatty acids, mineral elements, and flavor-related amino acids and volatile compounds. Results showed that TS eggs were typically associated with the lowest egg weight and the highest yolk color, as compared with CB and HL eggs. No differences were found in crude protein, crude fat, triglycerides, and cholesterol content between eggs from the different breeds, but these eggs were distinct in terms of the amino acid, fatty acid, and volatile flavor compound profiles. Moreover, the differences in amino acid and fatty acid profiles might contribute to the specific flavor of TS eggs. Evaluation results indicated that TS egg whites may be suitable as a protein source for premature infants and young children under three years old and TS egg yolks could be considered a beneficial dietary lipid source due to their potential anti-cardiovascular properties. Additionally, TS whole eggs could serve as a valuable source of selenium (Se), molybdenum (Mo), zinc (Zn), and phosphorus (P) for adults aged 18 to 65. However, TS and CB eggs showed inferior Haugh units, eggshell quality, and essential amino acid compositions for older children, adolescents, and adults. These findings provide a better insight into the health benefits of TS eggs and contribute to the breeding and nutrition regulation of TS breeds.

Enhancing Agro Morphological Traits of three Unique Traditional Rice Landraces of Chhattisgarh through Gamma Ray-Irradiation

Mutation breeding is a simple and effective technique for generating genetic variation within crops. Mutagens such as Gamma radiation induce changes in their DNA that could lead to the development of new traits, such as improved yield or disease resistance. In the present study, Gamma ray mutagenesis was performed on three traditional rice varieties (Gudma dhan, Dawar dhan, and Lohandi dhan) to identify potentially beneficial mutants with desirable agro-morphological agricultural characteristics. The major constraints to address were their tall statures and weak culms, fewer panicles and tillers, and late maturity. Using a fixed dose of 300 Gy, 35 mutants were identified in Dawar dhan, 33 in Gudma dhan, and 21 in Lohandi dhan. The selected mutants showed an average reduction in plant height that ranged from 42.69% to 33.11%, as compared to their respective landraces. Also, a substantial reduction (ranging from 3.08%-10.55%) in days to 50% flowering was observed. Importantly, these mutants showed an increase in yield of 38.11% (Dawar dhan), 32.63% (Gudma dhan), and 7.0% (Lohandi dhan). These findings demonstrate the utility of mutation breeding through Gamma radiation in alleviating the key constraints inherent to traditional rice landraces.

Assessment of Husbandry Practices, Production and Reproductive Performance of Indigenous Cattle in Urban and Peri -urban Areas of Gambella City, Ethiopia

The objective of the present study was to characterize cattle husbandry practices, production and reproductive performance of cattle in the urban and peri-urban areas of Gambella city. Sample of respondents from each selected kebele were selected randomly using simple random sampling technique. A total of 133 household (70 from urban and 63 from peri-urban) were selected for questionnaire interview. Data was analyzed using SPPS version 23 software. The overall mean of the respondents revealed that, the management system practiced was semi-intensive (87.2%), extensive system (12.8%) and there was no intensive management system practiced. the overall mean daily milk yield was 1.58± 0.017 Littre/cow/day. The overall mean daily milk yield analysis of variance was significantly (P<0.05) difference among urban and peri-urban areas. The current result also indicated that, the overall average lactation length was and 10.59± 0.15 months, and was not significantly (P>0.05) affected by the study areas. The overall average age at first services, age at first calving and calving interval was 46.31±0.33, 51.51±0.54, and 19.01±0.11 months respectively. In Addition, disease prevalence, poor animal health service delivery, grazing land and feed shortage were among the major constraints affecting production and productivity in the study areas. In conclusion, Age at first services, age at first calving and calving interval of indigenous cow was low compared to some of the indigenous breed in other regions, animal health and health services delivery are the problems affecting cattle productivity. Hence, all concerned stakeholders need to take urgent interventions in order to improve production and productivity of cattle.

Association of Ovocalyxin-32 Gene Variants with Egg Quality Traits in Indigenous Chicken Breeds.

This study sought to evaluate the genetic variations of the ovocalyxin-32 gene and its association with egg quality traits in indigenous chicken populations, focusing on exons 1 and 6. Genotype frequencies of SNPs (G/T and A/G) within these exons were assessed for their conformity to the Hardy-Weinberg equilibrium (HWE) across several strains. While most strains exhibited close adherence to HWE expectations, some like light-brown and gray strains indicated substantial discrepancies, particularly for the TT genotype, which points towards the possible effects of genetic drift as well as selection pressures. This study also analyzed the influence of such SNPs on egg quality parameters. A thinner eggshell, reduced shell weight, and decreased breaking strength were associated with the G/T SNP in exon 1, suggesting a likely negative effect on egg quality in T allele carriers. Conversely, the AG genotype displayed better performance in shell thickness, weight and egg weight in the A/G SNP in exon 1, whilst yolk height was best improved by the AA genotype compared to breaking strength. For instance, in exon 6, the A/G SNP enhanced the shell and yolk quality among AG genotypes, while the CC genotype resulted in better eggshell characteristics with enlarged yolks because the C/T SNP was linked. Nonetheless, there were no significant deviations from the HWE despite these associations, which suggested that most breeds had a stable genetic background. Further, considering SNPs' additive and dominant effects in this research, it was indicated that additive effects account for phenotypic expressions given by the G/T SNP located at exon 1. In contrast, significant additive and dominant effects were observed under the A/G SNP situated at the exon. Generally, it therefore could be concluded from this study that specific SNPs within the ovocalyxin-32 gene may act as good markers for marker-assisted selection (MAS) that can improve desired characteristics-such as those of egg quality-in indigenous chicken breeds. This study demonstrated that both additive and dominance effects must be taken into account when performing genetic analyses, thereby emphasizing the complexity of phenotypic variation caused by genetic mechanisms in native chicken races.