Color filters (CF) are essential integral parts of the liquid crystal display (LCD) and image sensor. Compared to traditional pigment colorants, organic dyes offer a promising alternative to realize CF with improved optical properties and higher resolution. However, organic dyes usually suffer from inferior thermal and photo-stability, limiting their applications in CF. Herein, four robust donor-acceptor organic dyes based on phenanthrenequinone chromophore were designed and synthesized by introducing aromatic amine derivatives as the electron donors. The strong donor-acceptor interactions in these dyes contribute to intense broad charge-transfer absorption bands from 375 nm to 600 nm with high molar extinction coefficients, thus realizing red color. Also, these dyes exhibit high thermal and photo-stability, good compatibility with the polymer binder and low aggregation tendencies, resulting in high thermal and photo-stability for the fabricated CF films. Remarkably, among these phenanthrenequinone dyes, DTPAP with multi-donor substitution and extended π-conjugation exhibited the best performance in terms of molar extinction coefficient, thermal and photo-stability, contributing to the highest thermal and photo-stability for the CF film with color difference values (ΔEab) below 0.75 under simulated industrial manufacturing processes. This work confirms that phenanthrenequinone is a robust chromophore and is conducive to developing thermal and photo-stable CF dyes, and paves a way to improve the optical properties and stability of donor-acceptor dyes for CF.