Landrace Research Articles

Constraints and recommendation for countrywide extension of artificial insemination in buffalo, goat and sheep

Background: The workshop aimed to identify the constraints and way forward to extend the artificial insemination in buffalo, sheep and goat countrywide. Methods: A day long workshop was organized jointly by the Coastal Vet Society Bangladesh (CVS-BD) and Grameen Jano Unnayan Sangstha (GJUS) at Bangladesh Development Society conference hall in Barishal district of Bangladesh. A total of 100 stakeholders in different aspect were joined in this workshop. Results: On the workshop, the constraints were lack of buffalo, sheep and goat breeding policy, recording systems, knowledge about the high-yielding breed, scarcity of quality feed, fodder and pasture land, lack of technical skills in reproduction and production personal, no or limited facilities to breed improvement technologies, lack of breeding infrastructure, non-availability of proven sire, no coordination among farmers, researchers, public and private organization, universities as well as other beneficiaries. The recommendations to overcome those constraints were to build up and strengthening the breeding policies and infrastructure, continuous up-gradation of native breed by high yielding breeds or varieties, adopted with assisted reproductive technologies, frequently advertise the beneficial aspects of buffalo milk and meat, development of manpower by technical training, national and international collaboration should be strengthened, private investment should be encouraged and alternative feed supply is needed to warrant. Conclusion: It is concluded that an initiative through public and private partnership or collaboration is needed to extent the artificial insemination program in buffalo, sheep and goat countrywide.

Propagation of pineapple (Ananas comosus L.) embryogenic cell suspension is regulated by LEAFY COTYLEDON1 gene AcoLEC1–1

Pineapple (Ananas comosus L.) is an important tropical fruit. Traditional breeding methods take about 15 years, but transgenic breeding using embryogenic cell suspension (ECS) can significantly shorten this cycle. Four different calli types were produced using the pineapple crown's middle stem part as an explant: water-like, solid, gemmiform, and crisp. The fastest multiplication was observed in suspension cultures obtained from the loose, crispy, granular, white, or yellow callus. The highest cell density in the liquid medium was achieved with MS+1.5 mg/L+4 mg/L6-BA+300 mg/L hormone combination. Inclusion of 11 mmol/L 2-morpholinoethanesulfonic acid (MES) stabilized the medium pH. The optimum sucrose concentration for pineapple propagation using ECS was 5 g/L. The expression of seven proteins in ECS in the medium containing 5 g/L sucrose was more than 5.0 times higher than in the medium containing 3 g/L. The expression of transcription factor NFYB/HAP3 (or LEAFY COTYLEDON1, LEC1) was the highest in the medium. The most prevalent AcoLEC1–1 transcripts were found in the embryogenic callus, and their patterns correlated well with ECS volume. AcoLEC1–1 played a key role in the process of sucrose-regulated ECS propagation.

Genomic wide association study and selective sweep analysis identify genes associated with improved yield under drought in Turkish winter wheat germplasm

A panel comprising of 84 Turkish winter wheat landraces (LR) and 73 modern varieties (MV) was analyzed with genome wide association study (GWAS) to identify genes/genomic regions associated with increased yield under favorable and drought conditions. In addition, selective sweep analysis was conducted to detect signatures of selection in the winter wheat genome driving the differentiation between LR and MV, to gather an understanding of genomic regions linked to adaptation and yield improvement. The panel was genotyped with 25 K wheat SNP array and phenotyped for agronomic traits for two growing seasons (2018 and 2019) in Konya, Turkey. Year 2018 was treated as drought environment due to very low precipitation prior to heading whereas year 2019 was considered as a favorable season. GWAS conducted with SNPs and haplotype blocks using mixed linear model identified 18 genomic regions in the vicinities of known genes i.e., TaERF3-3A, TaERF3-3B, DEP1-5A, FRIZZY PANICLE-2D, TaSnRK23-1A, TaAGL6-A, TaARF12-2A, TaARF12-2B, WAPO1, TaSPL16-7D, TaTGW6-A1, KAT-2B, TaOGT1, TaSPL21-6B, TaSBEIb, trs1/WFZP-A, TaCwi-A1-2A and TaPIN1-7A associated with grain yield (GY) and yield related traits. Haplotype-based GWAS identified five haplotype blocks (H1A-42, H2A-71, H4A-48, H7B-123 and H7B-124), with the favorable haplotypes showing a yield increase of > 700 kg/ha in the drought season. SNP-based GWAS, detected only one larger effect genomic region on chromosome 7B, in common with haplotype-based GWAS. On an average, the percentage variation (PV) explained by haplotypes was 8.0% higher than PV explained by SNPs for all the investigated traits. Selective sweep analysis detected 39 signatures of selection between LR and MV of which 15 were within proximity of known functional genes controlling flowering (PRR-A1, PPR-D1, TaHd1-6B), GY and GY components (TaSus2-2B, TaGS2-B1, AG1-1A/WAG1-1A, DUO-A1, DUO-B1, AG2-3A/WAG2-3A, TaLAX1, TaSnRK210-4A, FBP, TaLAX1, TaPIL1 and AP3-1-7A/WPA3-7A) and 10 regions underlying various transcription factors and regulatory genes. The study outcomes contribute to utilization of LR in breeding winter wheat.

Can Sustainability and Biodiversity Conservation Save Native Goat Breeds? The Situation in Campania Region (Southern Italy) between History and Regional Policy Interventions

The Campania region has a genetic heritage, both vegetal and animal, of great scientific interest, but many genetic resources risk extinction or abandonment. Thus, from a sustainability perspective, their conservation is very important and represents an imperative to allow future generations to satisfy their needs just as we are doing today. The aims of the present paper were to describe the current consistency and importance of goat farming in Italy and in the Campania region and to study its trend from 1861 to understand whether the policies for the sector implemented over time have been sufficient to conserve goat biodiversity. To these ends, the latest available data of the national livestock register of the Italian Ministry of Health, those of the different available Italian agricultural censuses, and historical–cultural documents published over time for the livestock sector were acquired and consulted to describe the goat sector and reconstruct its temporal trend. The results showed that in Italy there are just over 1,000,000 goats (the same consistency as 60 years ago), 50% of which are distributed in the southern regions, and 50,616 farms with goats, 43% of which are extensive. In this contest, the Campania region represents approximately 5% of the national goat population. The continuous decrease in the size of the national and regional goat heritage since the 1920s is the result of the agricultural policy instruments implemented for the livestock sector over time, which have effectively excluded the goat sector. Two small increases in the number of caprines were registered: the first in 1980s, when the Italian scientific community realized that the native goat genetic types, its milk and its organoleptic and dietary qualities could constitute a wealth of endogenous resources that needed to be valorized; the second, in the last decade, due to the actions of sustainability and biodiversity conservation implemented at the national and regional level. At the same time, today the goat sector continues to have a marginal role in the national and regional agricultural economy, and the survival of native goat farming is essentially ensured by sustainable rural communities conceived as the custodians of biodiversity.

On-farm conservation of traditional mango varieties by custodian farmers in Uttar Pradesh

On-farm conservation of traditional mango varieties by custodian farmers in Uttar Pradesh

Genome-Wide Association Study of Body Conformation Traits in Tashi Goats (Capra hircus).

Identifying genetic markers of economically valuable traits has practical benefits for the meat goat industry. To better understand the genomic variations influencing body conformation traits, a genome-wide association study was performed on Tashi goats, an indigenous Chinese goat breed. A total of 155 Tashi goats were phenotyped for eight body conformation traits: body height, body length, chest depth, chest width, chest girth, rump width, rump height, and cannon bone circumference. Then, 100 Tashi goats were randomly selected for whole-genome sequencing and genotyped. We obtained 1676.4 Gb of raw data with an average sequencing depth of 6.2X. Clean reads were aligned to the ARS1.2 reference genome, and 11,257,923 single nucleotide polymorphisms (SNPs) were identified. The structure analysis showed that these Tashi goats were almost not genetically related. The 109, 20, 52, 14, 62, 51, 70, and 7 SNPs were significantly associated with body height, body length, chest depth, chest width, chest girth, rump width, rump height, and cannon bone circumference. Within the ±500 kb region of significant SNPs, 183 genes were annotated. The most significantly enriched KEGG pathway was "olfactory transduction", and the most significantly enriched gene ontology (GO) terms were "cellular process", "cellular anatomical entity", and "molecular transducer activity". Interestingly, we found several SNPs on chromosomes 10 and 11 that have been identified multiple times for all eight body conformation traits located in two fragments (114 kb and 1.03 Mb). In chr.10:25988403-26102739, the six SNPs were tightly linked, the TACTAG genotype was the highest at 91.8%, and the FNTB (Farnesyltransferase, CAAX Box Beta) and CHURC1 (Churchill Domain Containing 1) genes were located. In chr.11:88216493-89250659, ten SNPs were identified with several dependent linkage disequilibrium (LD) blocks, and seven related genes were annotated, but no significant SNP was located in them. Our results provide valuable biological information for improving growth performance with practical applications for genomic selection in goats.

A phased genome of the highly heterozygous 'Texas' almond uncovers patterns of allele-specific expression linked to heterozygous structural variants

Abstract The vast majority of traditional almond varieties are self-incompatible and the level of variability of the species is very high, resulting in a highly heterozygosity genome. Therefore, information on the different haplotypes is particularly relevant to understand the genetic basis of trait variability in this species. However, although reference genomes for several almond varieties exist, none of them is phased and has genome information at the haplotype level. Here we present a phased assembly of genome of the almond cv. Texas. This new assembly has 13 % more assembled sequence than the previous version of the Texas genome and has an increased contiguity, in particular in repetitive regions such as the centromeres. Our analysis shows that the “Texas” genome has a high degree of heterozygosity, both at SNPs, short indels, and structural variants (SV) level. Many of the SVs are the result of heterozygous Transposable Element (TE) insertions, and in many cases they also contain genic sequences. In addition to the direct consequences of this genic variability on the presence/absence of genes, our results show that variants located close to genes are often associated with allele-specific gene expression (ASE), which highlights the importance of heterozygous SVs in almond.

Physio-Biochemical, Anatomical, and Molecular Analysis of Resistant and Susceptible Wheat Cultivars Infected with TTKSK, TTKST, and TTTSK Novel Puccinia graminis Races.

Stem rust, caused by Puccinia graminis f.sp. tritici, is one of the most dangerous rust diseases on wheat. Through physiological, biochemical, and molecular analysis, the relationship between the change in resistance of 15 wheat cultivars to stem rust disease and the response of 41 stem rust resistance genes (Sr,s) as well as TTKSK, TTKST, and TTTSK races was explained. Some cultivars and Sr genes, such as Gemmeiza-9, Gemmeiza-11, Sids-13, Sakha-94, Misr-1, Misr-2, Sr31, and Sr38, became susceptible to infection. Other new cultivars include Mir-3 and Sakha-95, and Sr genes 13, 37, 40, GT, and FR*2/SRTT3-SRTT3-SR10 remain resistant. Some resistance genes have been identified in these resistant cultivars: Sr2, Sr13, Sr24, Sr36, and Sr40. Sr31 was not detected in any cultivars. Reactive oxygen species such as hydrogen peroxide and superoxide, enzymes activities (catalase, peroxidase, and polyphenoloxidase), and electrolyte leakage were increased in the highly susceptible cultivars, while they decreased in the resistant ones. Anatomical characteristics such as the thickness of the epidermis, ground tissue, phloem tissue and vascular bundle diameter in the midrib were decreased in susceptible cultivars compared with resistant cultivars. Our results indicated that some races (TTKSK, TTKST, and TTTSK) appeared for the first time in Egypt and many other countries, which broke the resistant cultivars. The wheat rust breeding program must rely on land races and pyramiding genes in order to develop new resistance genes that will survive for a very long time.

Effect of dawri‐damaa (Pentas schimperiana) leaf meal supplementation on performances, carcass characteristics, and economic feasibility of sheep fed native grass hay

AbstractWith a growing export and local market, sheep farming is critical to the economy of smallholder farmers; however, indigenous sheep breeds usually exhibit low carcass output and live weight due to nutritional constraints. The study aimed to investigate the impact of supplementing local sheep with dawri‐damaa leaf meal (DDLM) on their performance, carcass characteristics, and profitability when fed native grass hay. The research used a randomized complete block design (RCBD) to administer four feeding treatments (T1, T2, T3, and T4 at 0%, 30%, 50%, and 70% DDLM, respectively) to 20 local uncastrated male lambs having an average 23.72 ± 0.73 kg body weight and average age of 11.72 ± 0.74 months. Greater doses of DDLM in the diet resulted in greater average daily gain (ADG) of 51.4–83.8 g/day and feed conversion efficiency (FCE) of 0.066–0.089 in lambs, compared to 15.0 g/day ADG and 0.025 FCE in lambs under control diet (T1). Additionally, the lambs had increased slaughter body weight (SBW), empty body weight (EBW), and hot carcass weight (HCW) in T4 and T3 compared to other treatments (p < .05). There were no significant differences in dressing percentages (DPs) across any treatment group. The study also discussed the economic viability of supplementing with DDLM, suggesting that feeding 70% daily dry matter of DDLM at 2.5% live weight might be beneficial depending on availability, access, and cost factors. In conclusion, feeding DDLM up to 70% has improved the performance of sheep and is economically feasible. Further research might be required to discover whether such levels of inclusion are harmful and apply different processing methods for feeding animals.

Genomics-assisted speed breeding for crop improvement: present and future

Global agricultural productivity and food security are threatened by climate change, the growing world population, and the difficulties posed by the pandemic era. To overcome these challenges and meet food requirements, breeders have applied and implemented different advanced techniques that accelerate plant development and increase crop selection effectiveness. However, only two or three generations could be advanced annually using these approaches. Speed breeding (SB) is an innovative and promising technology to develop new varieties in a shorter time, utilizing the manipulation of controlled environmental conditions. This strategy can reduce the generation length from 2.5 to 5 times compared to traditional methods and accelerate generation advancement and crop improvement, accommodating multiple generations of crops per year. Beside long breeding cycles, SB can address other challenges related to traditional breeding, such as response to environmental conditions, disease and pest management, genetic uniformity, and improving resource efficiency. Combining genomic approaches such as marker-assisted selection, genomic selection, and genome editing with SB offers the capacity to further enhance breeding efficiency by reducing breeding cycle time, enabling early phenotypic assessment, efficient resource utilization, and increasing selection accuracy and genetic gain per year. Genomics-assisted SB holds the potential to revolutionize plant breeding by significantly accelerating the identification and selection of desirable genetic traits, expediting the development of improved crop varieties crucial for addressing global agricultural challenges.

Study on the origin of the Baise horse based on whole-genome resequencing.

The Baise horse, an indigenous horse breed mainly distributed in the Baise region of Guangxi province in southwest China, has a long history as draft animal. However, there is a lack of research regarding the origin and ancestral composition of the Baise horse. In this study, whole-genome resequencing data from 236 horses of seven Chinese indigenous horse breeds, five foreign horse breeds, and four Przewalski's horses were used to investigate the relationships between the Baise horse and other horse breeds. The results showed that foreign horse breeds had no significant impact on the formation of the Baise horse. The two southwestern horse populations, the Debao pony and the Jinjiang horse, exhibit the closest genetic affinity with the Baise horse. This is consistent with their adjacent geographical distribution. Analysis of the migration route revealed a gene flow from the Chakouyi horse into the Baise horse. In summary, our results confirm that the formation of the Baise horse did not involve participation from foreign breeds. Geographical distance emerges as a crucial factor in determining the genetic relationships with the Baise horse. Gene flows of indigenous horse breeds along ancient routes of trade activities had played a role in the formation of the Baise horse.

Marker Density and Models to Improve the Accuracy of Genomic Selection for Growth and Slaughter Traits in Meat Rabbits.

The selection and breeding of good meat rabbit breeds are fundamental to their industrial development, and genomic selection (GS) can employ genomic information to make up for the shortcomings of traditional phenotype-based breeding methods. For the practical implementation of GS in meat rabbit breeding, it is necessary to assess different marker densities and GS models. Here, we obtained low-coverage whole-genome sequencing (lcWGS) data from 1515 meat rabbits (including parent herd and half-sibling offspring). The specific objectives were (1) to derive a baseline for heritability estimates and genomic predictions based on randomly selected marker densities and (2) to assess the accuracy of genomic predictions for single- and multiple-trait linear mixed models. We found that a marker density of 50 K can be used as a baseline for heritability estimation and genomic prediction. For GS, the multi-trait genomic best linear unbiased prediction (GBLUP) model results in more accurate predictions for virtually all traits compared to the single-trait model, with improvements greater than 15% for all of them, which may be attributed to the use of information on genetically related traits. In addition, we discovered a positive correlation between the performance of the multi-trait GBLUP and the genetic correlation between the traits. We anticipate that this approach will provide solutions for GS, as well as optimize breeding programs, in meat rabbits.

Genetic introgression from commercial European pigs to the indigenous Chinese Lijiang breed and associated changes in phenotypes

BackgroundGene flow is crucial for enhancing economic traits of livestock. In China, breeders have used hybridization strategies for decades to improve livestock performance. Here, we performed whole-genome sequencing of a native Chinese Lijiang pig (LJP) breed. By integrating previously published data, we explored the genetic structure and introgression of genetic components from commercial European pigs (EP) into the LJP, and examined the impact of this introgression on phenotypic traits.ResultsOur analysis revealed significant introgression of EP breeds into the LJP and other domestic pig breeds in China. Using a haplotype-based approach, we quantified introgression levels and compared EP to LJP and other Chinese domestic pigs. The results show that EP introgression is widely prevalent in Chinese domestic pigs, although there are significant differences between breeds. We propose that LJP could potentially act as a mediator for the transmission of EP haplotypes. We also examined the correlation between EP introgression and the number of thoracic vertebrae in LJP and identified VRTN and STUM as candidate genes for this trait.ConclusionsOur study provides evidence of introgressed European haplotypes in the LJP breed and describes the potential role of EP introgression on phenotypic changes of this indigenous breed.

Whole-genome resequencing of Chinese indigenous sheep provides insight into the genetic basis underlying climate adaptation

BackgroundChinese indigenous sheep are valuable resources with unique features and characteristics. They are distributed across regions with different climates in mainland China; however, few reports have analyzed the environmental adaptability of sheep based on their genome. We examined the variants and signatures of selection involved in adaptation to extreme humidity, altitude, and temperature conditions in 173 sheep genomes from 41 phenotypically and geographically representative Chinese indigenous sheep breeds to characterize the genetic basis underlying environmental adaptation in these populations.ResultsBased on the analysis of population structure, we inferred that Chinese indigenous sheep are divided into four groups: Kazakh (KAZ), Mongolian (MON), Tibetan (TIB), and Yunnan (YUN). We also detected a set of candidate genes that are relevant to adaptation to extreme environmental conditions, such as drought-prone regions (TBXT, TG, and HOXA1), high-altitude regions (DYSF, EPAS1, JAZF1, PDGFD, and NF1) and warm-temperature regions (TSHR, ABCD4, and TEX11). Among all these candidate genes, eight ABCD4, CNTN4, DOCK10, LOC105608545, LOC121816479, SEM3A, SVIL, and TSHR overlap between extreme environmental conditions. The TSHR gene shows a strong signature for positive selection in the warm-temperature group and harbors a single nucleotide polymorphism (SNP) missense mutation located between positions 90,600,001 and 90,650,001 on chromosome 7, which leads to a change in the protein structure of TSHR and influences its stability.ConclusionsAnalysis of the signatures of selection uncovered genes that are likely related to environmental adaptation and a SNP missense mutation in the TSHR gene that affects the protein structure and stability. It also provides information on the evolution of the phylogeographic structure of Chinese indigenous sheep populations. These results provide important genetic resources for future breeding studies and new perspectives on how animals can adapt to climate change.

Genome-wide scans for selection signatures in indigenous chickens reveal candidate genes associated with local adaptation

Population growth and climate change pose challenges to the sustainability of poultry farming. The emphasis on high-yield traits in commercialized breeds has led to a decline in their adaptability, Chicken varieties adapted to the local environment, possessing traits that facilitate adaptation to climate change, such as disease resistance and tolerance to extreme weather conditions, can improve hybridization outcomes. In this study, we conducted an analysis of the population structure and genetic diversity of 110 chickens representing indigenous breeds from southern China and two different commercial breeds. Further, we performed comparative population genomics, utilizing nucleotide diversity (π) and fixation statistics (FST), to characterize genomic features of natural selection and to identify unique genetic traits and potential selection markers developed by indigenous breeds after adapting to the local environment. Results based on genetic diversity and population structure analyses showed that indigenous varieties exhibited high levels of genetic diversity. Commercial breeds that have been indigenously bred demonstrated higher levels of genetic diversity than those that have not, and breeds with different selection practices displayed significant differences in genetic structure. Additionally, we further searched for potential genomic regions in native chicken ecotypes, uncovering several candidate genes related to ecological adaptations affecting local breeds, such as IKBKB, S1PR1, TSHR, IL1RAPL1 and AMY2A, which are involved in disease resistance, heat tolerance, immune regulation and behavioral traits. This work provides important insights into the genomic characterization of ecotypes of native chicken in southern China. The identification of candidate genes associated with traits such as disease resistance, heat tolerance, immunomodulation, and behavioral traits is a significant outcome. These candidate genes may contribute to the understanding of the molecular basis of the adaptation of the southern native chicken to the local environment. It is recommended that these genes be integrated into chicken breeding programs to enhance sustainable agriculture and promote effective conservation and utilization strategies.

Proteomic and metabolomic insights into seed germination of Ferula assa-foetida

Cold stratification is known to affect the speed of seed germination; however, its regulation at the molecular level in Ferula assa-foetida remains ambiguous. Here, we used cold stratification (4 °C in the dark) to induce germination in Ferula assa-foetida and adopted a proteomic and metabolomic approach to understand the molecular mechanism of germination. Compared to the control, we identified 209 non-redundant proteins and 96 metabolites in germinated F. assa-foetida seed. Results highlight the common and unique regulatory mechanisms like signaling cascade, reactivation of energy metabolism, activation of ROS scavenging system, DNA repair, gene expression cascade, cytoskeleton, and cell wall modulation in F. assa-foetida germination. A protein-protein interaction network identifies 18 hub protein species central to the interactome and could be a key player in F. assa-foetida germination. Further, the predominant metabolic pathways like glucosinolate biosynthesis, arginine and proline metabolism, cysteine and methionine metabolism, aminoacyl-tRNA biosynthesis, and carotenoid biosynthesis in germinating seed may indicate the regulation of carbon and nitrogen metabolism is prime essential to maintain the physiology of germinating seedlings. The findings of this study provide a better understanding of cold stratification-induced seed germination, which might be utilized for genetic modification and traditional breeding of Ferula assa-foetida. SignificanceSeed germination is the fundamental checkpoint for plant growth and development, which has ecological significance. Ferula assa-foetida L., commonly known as “asafoetida,” is a medicinal and food crop with huge therapeutic potential. To date, our understanding of Ferula assa-foetida seed germination is rudimentary. Therefore, studying the molecular mechanism that governs dormancy decay and the onset of germination in F. assa-foetida is essential for understanding the basic principle of seed germination, which could offer to improve genetic modification and traditional breeding.

Machine learning strategy for light lamb carcass classification using meat biomarkers

In Mediterranean areas, lamb meat is considered to be of great commercial value. Moreover, consumers are becoming increasingly interested in understanding the origin of lamb meat and its associated production and breeding systems. Among many applications, algorithms based on artificial intelligence are used to identify the origin of food products, and in this context, algorithms such as the Support Vector Machine (SVM), K-Nearest Neighbours (KNN), and the Artificial Neural Network (ANN) have been proposed to differentiate the origin of the animals according to their feeding diet. The objective of this study was to evaluate the performance of a variable reduction method based on a multiple regression model and three widely-used machine learning algorithms (SVM, KNN and ANN) for the classification of three commercial light lamb carcasses, from three feeding diets, in an indigenous Spanish breed (Mallorquina), using fatty acid and volatile compound biomarkers of meat. Machine learning algorithms were employed to discriminate lamb carcasses using 14 identified significant biomarkers, which were arranged based on an estimation of the relative importance (stepwise forward multiple regression F-score) of the input variables. We achieved high performances for the SVM, KNN and ANN algorithms, with 86%, 98% and 98% prediction accuracy, respectively. Among the 14 biomarkers used, 7 were identified as showing the highest discriminant capacity. The F-scores indicate that C17:1 and C20:5 n-3 fatty acids, and 2,5-dimethylpyrazine and 3-methylbutanal volatile compounds are the four most relevant biomarkers for predicting three lamb feeding diets.

High albumen height by expression of GALNT9 and thin eggshell by decreased Ca2+ transportation caused high hatchability in Huainan partridge chicken

Hatchability could be quite different among individuals of indigenous chicken breed which might be affected by the egg quality. In this study, hatchability was individually recorded among 800 40-wk-old Huainan partridge chickens. The chickens were then divided into high and low hatchability groups (HH and LH group) with 50 birds in each group. Egg quality was further determined in the two groups. Eight birds from each group were selected for slaughtering and tissue, responsible for egg formation, collection for structure observation by staining and candidate gene expression by transcriptome analysis. The hatchability in HH was 100% and 61.18% in LH. The eggshell thickness and shell strength were significantly lower, while the albumen height and Haugh unit were significantly higher in HH group than those in LH group (P < 0.05). The magnum weight and index, and the expression of polypeptide N-acetylgalactosaminyltransferase 9 (GALNT9), which responsible for thick albumen synthesis, in HH group were also significantly higher than that of LH group (P < 0.05). Compared with the LH group, there were 702 differentially expressed genes (DEGs) in HH group, of which 402 were up-regulated and 300 were down-regulated. Candidate genes of calbindin 1 (CALB1) and solute carrier family 26 member 9 (SLC26A9), which regulate calcium signaling pathway so as to affect Ca2+ transportation, exhibited significant high and low expression, respectively, in HH group compared to those in LH group (P < 0.05). Therefore, indigenous chicken with high expression of GALNT9 in magnum to form thick albumen to provide more protein for embryo, while high CALB1 and low expression of SLC26A9 to decrease Ca2+ transportation so as to form a thinner eggshell and provide better gas exchange during embryo development.

Enhancement of cryopreserved rooster semen and fertility potential after oral administration of Thai ginger (Kaempferia parviflora) extract in Thai native chickens.

Semen cryopreservation is an effective method of preserving genetic material, particularly in native chicken breeds facing a substantial decline. In this study, we evaluated the quality of frozen/thawed rooster semen treated with different concentrations of oral administrations of black ginger (Kaempferia parviflora: KP) extract and determined its fertility. Thirty-two Thai native roosters (Pradu Hang Dum, 42 weeks old) were used in this study. The treatments were classified into four groups according to the concentration of KP extract administered to the roosters: 0, 100, 150, and 200 mg/kg body weight. The quality of fresh semen was analyzed before cryopreservation. Post-thaw sperm quality and fertility potential were determined. Also, lipid peroxidation was determined. The results showed that sperm concentration and movement increased in roosters treated with 200 mg/kg of KP extract (P<0.05). The malondialdehyde (MDA) in the rooster receiving 200 mg/kg KP extract was lower than that in the other but had an insignificant difference within the KP treatment groups (P>0.05). The highest MDA levels were observed in the control group (P<0.05). The percentage of motile sperm (total motility and progressive motility) after semen thawing was higher in roosters that received 150 and 200 mg/kg KP extract than in those that received 100 mg/kg KP extract and the control (P<0.05). MDA levels decreased significantly in roosters that received 150 and 200 mg/kg KP extract than in those that received 100 mg/kg KP extract and the control (P<0.05). Fertility and hatchability were greater in the KP150 and KP200 groups than in the KP100 and control groups (P<0.05). The optimal amount of KP extract influencing initial sperm quality was determined to be 200 mg/kg. However, 150 mg/kg was the optimal low dosage of KP extract administration that maintained sperm quality and fertility following semen cryopreservation.

The high cost of movement in an arid working landscape for an endangered amphibian.

Connectivity is essential for the maintenance of genetic diversity and stability of wildlife populations. Drought and changing precipitation regimes have caused natural aquatic amphibian breeding habitats to disappear or become isolated and have led to the replacement of natural surface water with artificial livestock water tanks. Terrestrial movement is the only means of responding to aquatic threats in arid landscapes and to allow population connectivity. Aridity may present an impenetrable barrier in hydrologically fragmented environments. We used a facultatively paedomorphic and federally endangered salamander to assess the challenges of movement across arid working lands. Sonoran tiger salamanders (Ambystoma mavortium stebbinsi) are endemic to the San Rafael Valley of southeastern Arizona, United States of America, where they depend on livestock water tanks as breeding habitat. The ecology of this species' metamorphs outside of stock tanks is virtually unknown. To assess survival on the landscape during terrestrial movement we used radio-transmitters to track 78 adult metamorphosed salamanders over 2 years. Sonoran tiger salamanders moved up to 1 km from the tank edge, and average distances moved of over 400 m were higher than most Ambystoma species. However, during the study period, none reached neighboring stock tanks. We found high mortality due to predation and desiccation. Individuals that dispersed to terrestrial habitat in summer survived longer than individuals that dispersed in spring. High mortality suggests terrestrial movement is exceptionally risky and may contribute to isolated subpopulations and elevated levels of inbreeding. Conservation actions that improve and maintain artificial aquatic habitats as well as increase connectivity may improve long-term management for pond-breeding amphibians in arid regions.