Total Area Research Articles

Hyperbaric oxygen (HBO2) therapy in thermal burn injury revisited. Pressure does matter. Review.

ABSTRACT Smolle C, Auinger D, Lindenmann J, Smolle J, Smolle-Juettner FM, Kamolz LP. Hyperbaric oxygen (HBO2) therapy in thermal burn injury revisited. Pressure does matter. Review. Undersea Hyperb Med. 2024 Second Quarter; 51(2):115-127. For over five decades, many experimental and clinical studies have shown predominantly positive but controversial results on the efficacy of hyperbaric oxygen (HBO2) therapy in burns. The study aimed to define a common denominator or constellations, respectively, linked to the effects of HBO2 in burns with a special focus on dosage parameters. Based on original work since 1965, species, number of individuals, type of study, percentage of total body surface area (TBSA), region, depth of burn, causative agent, interval between burn and first HBO2 session, pressure, duration of individual session, number of HBO2 sessions per day, cumulative number of HBO2 sessions and type of chamber were assessed. Out of 47 publications included, 32 were animal trials, four were trials in human volunteers, and 11 were clinical studies. They contained 94 experiments whose features were processed for statistical evaluation. 64 (67.4%) showed a positive outcome, 16 (17.9%) an ambiguous one, and 14 (14.7%) a negative outcome. The only factor independently influencing the results was pressure with ATA (atmospheres absolute) lower than 3 ATA being significantly associated with better outcomes (p=0.0005). There is a dire need for well-designed clinical studies in burn centers equipped with hyperbaric facilities to establish dedicated treatment protocols.

Cost prediction of building projects using the novel hybrid RA-ANN model

PurposeAccurate and timely cost prediction is critical to the success of construction projects which is still facing challenges especially at the early stage. In the context of rapid development of machine learning technology and the massive cost data from historical projects, this paper aims to propose a novel cost prediction model based on historical data with improved performance when only limited information about the new project is available.Design/methodology/approachThe proposed approach combines regression analysis (RA) and artificial neural network (ANN) to build a novel hybrid cost prediction model with the former as front-end prediction and the latter as back-end correction. Firstly, the main factors influencing the cost of building projects are identified through literature research and subsequently screened by principal component analysis (PCA). Secondly the optimal RA model is determined through multi-model comparison and used for front-end prediction. Finally, ANN is applied to construct the error correction model. The hybrid RA-ANN model was trained and tested with cost data from 128 completed construction projects in China.FindingsThe results show that the hybrid cost prediction model has the advantages of both RA and ANN whose prediction accuracy is higher than that of RA and ANN only with the information such as total floor area, height and number of floors.Originality/value(1) The most critical influencing factors of the buildings’ cost are found out by means of PCA on the historical data. (2) A novel hybrid RA-ANN model is proposed which proved to have the advantages of both RA and ANN with higher accuracy. (3) The comparison among different models has been carried out which is helpful to future model selection.

Corneal Epithelial Cell Density Is Reduced in Young Adults With Conjunctival Ultraviolet Autofluorescence.

The aim of this study was to investigate the effects of chronic ultraviolet (UV) radiation exposure on the corneal microstructure using conjunctival UV autofluorescence (CUVAF) as a marker of exposure. Young healthy adults aged 18 to 35 years were recruited. Participant's demographics and sun exposure behavior were recorded using questionnaires. Images of the bulbar conjunctiva from the right eye were captured and analyzed for the CUVAF area. Corneal microstructure was assessed by in vivo confocal microscopy and anterior segment optical coherence tomography. The presence of palisades of Vogt in all 4 limbal quadrants was recorded. CUVAF was observed in 31 of 52 eyes (60%), with a mean (±SD) nasal, temporal, and total CUVAF area of 5.39 ± 4.16 mm 2 , 4.29 ± 4.27 mm 2 , and 9.67 ± 7.01 mm 2 , respectively. Individuals with CUVAF were significantly more likely to report undertaking moderate-intensity to high-intensity outdoor exercise ( P = 0.021). Individuals with CUVAF were less likely to have visible nasal and temporal palisades of Vogt ( P = 0.011). Corneal basal cell densities anterior to the nerve whorl ( P < 0.001) and nasally ( P = 0.005) were lower in individuals with CUVAF. Wing cell density anterior to the nerve whorl was lower in individuals with CUVAF ( P = 0.011). No significant changes in the central and limbal corneal epithelial thickness were observed. Significant reductions in corneal epithelial cell density were observed in individuals with CUVAF, a biomarker of chronic UV exposure. This observation suggests that chronic UV exposure is damaging to the corneal microstructure.

First Report of the Root-Knot Nematode Meloidogyne incognita on Bletilla striata Rchb.f. (Orchidaceae) in China.

Bletilla striata Rchb.f., is a perennial herbaceous bulbous plant known as the Chinese ground or hyacinth orchid classified in the Orchidaceae. It is native to southeast Asia and mainly distributed in China, Japan and northern Myanmar (He et al. 2017). It has the functions of astringent hemostasis and analgesia, and can also be used to treat traumatic bleeding, ulcers, swelling and chapped skin. Therefore, it occupies an important position in traditional Chinese medicine (Xu et al. 2019). In June 2023, three farmers in Mengzi (103.39°N, 23.21°E), Yunnan Province, China, observed that some Bletilla striata Rchb.f. plants grew poorly with small and chlorotic leaves (Figure 1 A). We suspected that these symptoms were caused by root-knot nematode infection, but the galls on the roots were small and inconspicuous (Figure 1 A). The presence of nematode females in both the galled regions and the normal roots (Figure 1 B), revealed by fuchsin staining (Byrd et al. 1983), indicated that the symptoms were probably caused by root-knot nematode infection. To estimate the incidence rates, we randomly selected 100 B. striata Rchb.f. plants from each of five fields representing a total area of 3000 m2. In these fields, the occurrence of stained root-knot nematodes were 19.3%, 17%, 18.3%, 15%, and 13%, respectively. The gall rating of the infected plants in the B striata Rchb.f. samples collected from the five fields was 2 (rating scale of 0 to 5). Females (n=20), second-stage juveniles (J2s, n=20) and egg masses (n=20) were extracted and collected from roots and soil for morphological and molecular identification. The females had a white, pyriform body and their perineal patterns exhibited a high and square dorsal arch, lacking distinct lateral line (Figure 1. C & D). Measurements of females (n = 20) were: body length (BL) = 708.64±89.6 µm (554.36 to 844.51 µm); maximum body width (BW) = 461.73±47.44 µm (365.25 to 561.49 µm); stylet length (ST) = 15.49±3.15 µm (10.55 to 19.78 µm); and distance from dorsal esophageal gland opening to the stylet knobs (DGO) = 3.33±0.27 µm (2.77 to 3.93 µm). Measurements of J2s (n=20) were BL = 417.7±47.67 µm (342.16 to 499.68 µm); BW = 15.74±2.66 µm (11.05 to 25.63 µm); ST = 12.49±1.12 µm (10.19 to 15.02 µm); DGO = 2.64±0.59 µm (40.17 to 68.74 µm); tail length = 51.93±8.55 µm (10.43 to 27.22 µm); hyaline tail terminus = 18.23±3.99 µm (1.48 to 3.98 µm). These morphological features match the description of Meloidogyne incognita (Eisenback et al. 1981). To further confirm the species, we selected three infected plants from each field for molecular identification, the ITS region amplified using the primers 18S/26S (5'-TTGATTACGTCCCTGCCCTTT-3',5'-TTTCACTCGCCGTTACTAAGG-3') (Vrain et al. 1992) . A 729 bp PCR product of ITS region (accession nos. OR463907) was obtained from all infected plants. The amplicons from 18S/26S primer pair were sequenced and the sequences showed 95.29% homology with sequences of M. incognita (accession nos. MT209948.1). Moreover, a 835 bp DNA fragment (accession nos. OR469000) was obtained using the specific primers Mi-F/Mi-R (5'-GTGAGGATTCAGCTCCCCAG-3',5'-ACGAGGAACATACTTCTCCGTCC-3') for M. incognita (Meng et al. 2004), the sequence showed 99.28% homology with sequences of M. incognita (accession nos. ON416569). The morphological features and molecular data confirmed the identification of the root-knot nematode on B. striata Rchb.f. as M. incognita. To confirm the pathogenicity, ten healthy B. striata Rchb.f. seedlings were each inoculated with 500 freshly hatched J2s isolated from field Bletilla striata Rchb.f.. Five healthy seedlings without J2 inoculation were used as controls. At 60 days after inoculation, most of the inoculated plants exhibited similar symptoms to those initially observed by farmers in the field. On average, 1532 J2s were recovered from each inoculated plant, yielding a reproductive factor of 2.1. The gall rating for these inoculated plants was 2. Fuchsin staining revealed the presence of root-knot nematode females within the roots, with an average of 17 females detected per inoculated plant. No symptoms were observed in the control plants. This is the first report of M. incognita infecting B. striata Rchb.f. in China. M. incognita can cause severe infection and damage to some crops, resulting in serious economic losses (Eisenback, 2022). The growers need to take measures to prevent the spread of this nematode.

Mapping Opium Poppy Cultivation: Socioeconomic Insights from Satellite Imagery

Over 30 million people globally consume illicit opiates. In recent decades, Afghanistan has accounted for 70–90% of the world’s illicit supply of opium. This production provides livelihoods to millions of Afghans, while also funneling hundreds of millions of dollars to insurgent groups every year, exacerbating corruption and insecurity, and impeding development. Remote sensing and field surveys are currently used in official estimates of total poppy cultivation area. These aggregate estimates are not suited to study the local socioeconomic conditions surrounding cultivation. Few avenues exist to generate comprehensive, fine-grained data under poor security conditions, without the use of costly surveys or data collection efforts. Here, we develop and test a new unsupervised approach to mapping cultivation using only freely available satellite imagery. For districts accounting for over 90% of total cultivation, our aggregate estimates track official statistics closely (correlation coefficient of 0.76 to 0.81). We combine these predictions with other grid-level data sources, finding that areas with poppy cultivation have poorer outcomes such as infant mortality and education, compared to areas with exclusively other agriculture. Surprisingly, poppy-growing areas have better healthcare accessibility. We discuss these findings, the limitations of mapping opium poppy cultivation, and associated ethical concerns.

Detecting the corneal neovascularisation area using artificial intelligence

AimsTo create and assess the performance of an artificial intelligence-based image analysis tool for the measurement and quantification of the corneal neovascularisation (CoNV) area.MethodsSlit lamp images of patients with CoNV...

تقدير اعداد المجاميع السكانية لترسة الفرات ملساء الصدفة Rafetus euphraticus في الاهوار الوسطى ( موقع تراث عالمي)

تم تصنيف ترسة الفرات ملساء الصدفة Rafetus euphraticus على أنها مهددة بخطر الانقراض ضمن القائمة الحمراء للاتحاد الدولي لحفظ الطبيعة، ويُعتقد أنها تعرضت لانخفاض كبير في أعدادها مؤخرًا. تقتصر معلومات الأنواع في العراق على عدد قليل من المسوحات السريعة مع القليل من المعلومات التفصيلية عن التربية والتوزيع. هدفت الدراسة الى تقدير اعداد سلاحف الفرات ملساء الصدفة في الأهوار الوسطى باستخدام استقراء بسيط للعدد. تم استخدام طريقة المربع (بحجم 5 كم2 لكل منهما) لتسجيل توزيع سلحفاة الفرات ملساء الصدفة داخل موقع الدراسة وتم إجراء عشرة مسوحات ابتداءا من شهر تشرين الاول 2021 إلى ايلول 2022 باستثناء موسم السبات (كانون الاول وكانون الثانيو شباط). تم تسجيلها داخل المياه عن طريق وضع الشباك في مناطق معينة بالأهوار الوسطى. اقترح الاستقراء البسيط لتعداداتنا لكامل الأهوار الوسطى أن يبلغ الحد الأقصى لحجم المجاميع السكانية 2526.55 فردًا /المساحة الكلية) 219.700 هكتار.( تعتبر الأهوار الوسطى موقعًا مهمًا لـ R. euphraticus حيث تم تسجيل إجمالي 46 فردًا.

First report of Root-Knot Nematode Meloidogyne enterolobii infecting coriander in Shaanxi, Northern China.

Coriander (Coriandrum sativum), which can be used for its root, stem, and leaf as both food and medicine (Prachayasittikul et al. 2018), is widely cultivated in China. The coriander cultivation area of Guanzhong region, including Xi' an, Xianyang, and Weinan, is 20 million m2, which accounts for 85.7% of the total cultivation area in Shaanxi. In September 2022, obvious galls were observed on the roots of coriander plants (cv. Xiaoye) growing in a field in Huyi District, Xi' an City (34°1'26.4"N, 108°31'58.8"E). The diseased plants did not show obvious above-ground symptoms. To identify the species, second-stage juveniles (J2s) and males were collected from soil in the root zone, and adult females were isolated from galls of diseased roots. The perineal patterns of adult females (n = 20) were round to oval, with high dorsal arches and no obvious lateral lines were observed. Morphological measurements of females (n = 20) included body length (L) = 682 ± 56 (554 to 780) μm, body width (BW) = 522 ± 45 (420 to 597) μm, stylet = 14.9 ± 0.9 (13.4 to 16.3) μm, dorsal pharyngeal gland orifice to stylet base (DGO) = 5.3 ± 0.5 (4.3 to 6.3) μm, vulval slit length = 26 ± 2.8 (20 to 32) μm, vulval slit to anus distance = 21 ± 1.7 (18.5 to 26) μm. Measurements of males (n = 8) were L = 1398 ± 57 (1308 to 1450) μm, BW = 28 ± 2.9 (23 to 32) μm, stylet = 16.1 ± 0.8 (15.3 to 17.3) μm, DGO = 4.5 ± 0.5 (3.5 to 4.9) μm, spicules = 27 ± 1.1 (26 to 29) μm. Measurements of J2s (n = 20) were as follows: L = 434 ± 16.8 (391 to 477) μm, BW = 15.6 ± 0.9 (13.7 to 17.3) μm, stylet = 12.6 ± 0.6 (11.3 to 13.6) μm, DGO = 3.9 ± 0.3 (3.4 to 4.5) μm, tail = 52 ± 4.0 (47 to 60) μm, hyaline tail length = 15.6 ± 1.3 (13.6 to 18.6) μm. These morphological characteristics were consistent with those described for Meloidogyne enterolobii (Yang and Eisenback 1983). Ten females were put in 10 tubes for DNA extraction following Htay et al. (2016). The ITS-rDNA sequence was amplified using the primers 18S/26S (Vrain et al. 1992). A 765 bp fragment was obtained and the sequence (GenBank OR789453) was 99.87% identical to sequences of M. enterolobii (MT406251 and MT067559). The mtDNA CoxII-16S sequence was amplified using primers C2F3/1108 (Powers and Harris, 1993). The sequence was 705 bp (OR795028) and 100% identical to sequences of M. enterolobii (MK455870 and MZ643270). A single 236 bp fragment was amplified using species-specific primers Me-F/Me-R, confirming the species as M. enterolobii (Long et al. 2006). The infection test was conducted in a greenhouse at 27 ± 2℃. Eight 2-week-old coriander plants (cv. Xiaoye) were individually grown in pots filled with sterilizer soil and inoculated with 800 J2s hatched from collected M. enterolobii egg masses. Forty-five days after nematode inoculation, the inoculated plants had galled roots like those observed in the field. The reproduction factor (final population density/initial population density) was 11.9 ± 2.0, indicating coriander was a suitable host for M. enterolobii. No symptoms were observed in controls. To our knowledge, this is the first known natural infection of coriander with M. enterolobii in China. M. enterolobii has been reported on various crops in southern provinces of China (EPPO, 2023). Considering the high level of agricultural trade between different regions, there is a high risk of M. enterolobii transmission to Guanzhong region through infested soil and susceptible plant materials. Further monitoring and research on effective control strategies are needed to prevent the spread of this nematode.

أهمية التأثير البشري في تقييم الحالة البيئية للمدن في أوزبكستان (منطقة نافوي كحالة للدراسة)

يعتبر إنشاء سلسلة من الخرائط ، وتجميع المؤشرات البيئية ، وتقييم الحالة البيئية للمدن من المهام البحثية وثيقة الصلة بالموضوع. إن تزايد عدد السكان في المدن ، وإنشاء العديد من المؤسسات الصناعية والإنتاجية ، واستخدام المركبات ، كلها عوامل تساهم في تدهور البيئة. منطقة نافوي هي وحدة إدارية شابة تقع في وسط أوزبكستان. أما فيما يتعلق بالتنمية الصناعية فمنطقة نافوي هي الأولى بين الوحدات الإدارية في الجمهورية. يشكل الإنتاج في مدنها ، وخاصة الإنتاجية العالية للمؤسسات الصناعية الثقيلة ، والمشاكل البيئية بأشكال مختلفة بسبب الضغط البشري على البيئة الطبيعية ، وصحة السكان - الأمهات والأطفال وكبار السن - تهديدًا خطيرًا. نتيجة للضغط البشري المرتفع ، تتناقص المساحات الخضراء النظيفة بيئيًا. تحتل حصة صغيرة جدًا مقارنة بالمساحة الإجمالية. وهذا بدوره يمكن أن يسبب ضغوطًا بيئية في المدن الإقليمية الواقعة في المناطق القاحلة ، ويسبب فقدان المساحات الخضراء. إن توقع مثل هذه العواقب ومكافحتها أمر مهم بشكل خاص اليوم. تحلل هذه المقالة الظروف البيئية في منطقة نافوي ومدنها ، بالإضافة إلى العامل الأكثر أهمية الذي يؤثر عليها ، التأثيرات البشرية. تم تصنيف الأراضي لمنطقة المدينة بالإضافة إلى الاقتراحات والتوصيات. لهذا ، قمنا بتحليل وتجميع التصنيف الهيكلي لمنطقة المدن الإقليمية. نتيجة لأبحاثنا ، يمكننا أن نرى أن المخاطر البيئية عالية. في هذه المقالة ، تتم تغطية المعلمات الرئيسية للدراسة بحسابات دقيقة.

First report of Lasiodiplodia pseudotheobromae causing soft rot of plum in China.

Plum (Prunus salicina) is one of the most important fruit tree species worldwide (Valderrama-Soto et al. 2021). In June 2023, the postharvest soft rot symptoms were observed on plum fruits in several fruit markets of Guiyang city, Guizhou province, China. The disease incidence in these markets ranged from 20 to 25% with 70% disease severity. Plum fruits showed rotting, which was characterized by water soaked fruit tissue, softening and presence of whitish mycelia four days post inoculation. In severe conditions, whole fruits become rotted and were covered with white fungal mycelia. Small sections (5 × 3 mm) from 6 diseased plum fruits were surface sterilized by using 75% ethanol for 30 s followed by 0.1% mercuric chloride solution for 5 min, rinsed three times with ddH2O, and then transferred onto potato dextrose agar (PDA) and incubated at 25 ± 2°C for three days. Three pure cultures (GUCC23-0001 to GUCC23-0003) were obtained by transferring a single hyphal tip to new PDA plates. Colonies of these isolates were grayish-white initially, gradually turning to whitish brown with fluffy aerial mycelia and uneven edges and finally turned to a dark gray colony after five days of inoculation. The pseudoparaphyses were hyaline, cylindrical, aseptate, and rounded at apex. Conidia were ellipsoidal, hyaline, unicellular, and 24.2 to 28.6 × 12.3 to 15.5 µm in size (n = 30) (Fig. S1), which were similar to the morphology of Lasiodiplodia pseudotheobromae (Alves et al. 2008). Furthermore, fungal DNA was extracted from fresh mycelia of PDA after seven days by using fungus genomic DNA extraction kit (Biomiga, USA). Partial DNA sequences from four loci including internal transcribed spacer (ITS), translation elongation factor 1-alpha (tef1), beta-tubulin (tub2), and polymerase II second largest subunit (rpb2) were amplified with ITS1 and ITS4 (White et al. 1990), EF1-688F and EF1-1251R (Alves et al. 2008), Bt2a and Bt2b (Glass and Donaldson 1995), and RPB2-LasF and RPB2-LasR, respectively (Cruywagen et al. 2017). GenBank accession numbers are OR361680, OR361681, OR361682 for ITS, OR423394, OR423395, OR423396 for tef1, OR423397, OR423398, OR423399 for tub2, and OR423391, OR423392, OR423393 for rpb2, and gene sequencing showed 99.6 to 100% identity with ex-type strain of L. pseudotheobromae (CBS 116459). Phylogenetic analysis also placed our isolates in a highly supported clade with the reference isolate of L. pseudotheobromae (Fig. S2). Another experiment was designed to confirm the pathogenicity test for additional confirmation. Five mm mycelial plugs of L. pseudotheobromae from a three day old culture on PDA were placed on five surface-sterilized and non-wounded plum fruits for 12 hours and incubated at 25°C ± 2°C for four days. Sterilized fungus free PDA plugs were used as a negative control. Mycelial plugs were removed after 12 hours following which whole fruits were incubated in plastic boxes at 25°C ± 2°C. The experiment was repeated twice. The pathogenicity was evaluated under control conditions in laboratory (relative humidity, 70 ± 5% and temperature 25 ± 5˚C). Plum fruits showed rotting, which was characterized by water soaked fruit tissue, softening and presence of whitish mycelia four days post inoculation. These symptoms and signs were similar to the initially observed symptoms on plums in the markets. No disease symptoms were observed on the control fruits. The re-isolated fungus obtained from inoculated plum fruits was very similar to those isolated from diseased samples in morphology, fulfilling Koch's postulates. To the best of our knowledge, this is the first report of L. pseudotheobromae causing postharvest fruit rot of plum in China. In 2022, the total planting area of plum was 1946.5 thousand hectares, which produces approximately 6626300 tons of plum (Food and Agriculture Organization of the United Nations, 2022). Based on the disease incidence and severity reported in the current study, soft rot of plum may be responsible for nearly 35% of yield losses under severe. Therefore, our study laid a theoretical foundation for the prevention and control of this post-harvest disease of plum.

Nomograms combining computed tomography-based body composition changes with clinical prognostic factors to predict survival in locally advanced cervical cancer patients.

To explore the value of body composition changes (BCC) measured by quantitative computed tomography (QCT) for evaluating the survival of patients with locally advanced cervical cancer (LACC) underwent concurrent chemoradiotherapy (CCRT), nomograms combined BCC with clinical prognostic factors (CPF) were constructed to predict overall survival (OS) and progression-free survival (PFS). Eighty-eight patients with LACC were retrospectively selected. All patients underwent QCT scans before and after CCRT, bone mineral density (BMD), subcutaneous fat area (SFA), visceral fat area (VFA), total fat area (TFA), paravertebral muscle area (PMA) were measured from two sets of computed tomography (CT) images, and change rates of these were calculated. Multivariate Cox regression analysis showed ΔBMD, ΔSFA, SCC-Ag, LNM were independent factors for OS (HR = 3.560, 5.870, 2.702, 2.499, respectively, all P < 0.05); ΔPMA, SCC-Ag, LNM were independent factors for PFS (HR = 2.915, 4.291, 2.902, respectively, all P < 0.05). Prognostic models of BCC combined with CPF had the highest predictive performance, and the area under the curve (AUC) for OS and PFS were 0.837, 0.846, respectively. The concordance index (C-index) of nomograms for OS and PFS were 0.834, 0.799, respectively. Calibration curves showed good agreement between the nomograms' predictive and actual OS and PFS, decision curve analysis (DCA) showed good clinical benefit of nomograms. CT-based body composition changes and CPF (SCC-Ag, LNM) were associated with survival in patients with LACC. The prognostic nomograms combined BCC with CPF were able to predict the OS and PFS in patients with LACC reliably.

First report of strawberry polerovirus 1 in strawberry in Italy.

Strawberry (Fragaria × ananassa Duch.) was introduced in Sicily (Italy) in the 1930s in the small town of Maletto, on the slopes of Etna volcan, where it's currently cultivated in a total area of 30 ha. The French cv. 'Madame Moutot', appreciated for its unique flavor and intense fragrance, was there propagated vegetatively and after decades, the distinctive 'Etna ecotype' originated by adaptation to the peculiar environmental conditions of the area (Milella et al., 2006). In May 2023, in a 0.5 ha "Etna ecotype" strawberry field, virus-like symptoms were observed in approximately 50% of the plants. Symptoms included severe dwarfing, leaf cupping and chlorotic spotting which lead to decline of infected plants. To investigate the etiology of the disease, leaf samples were collected from eight symptomatic plants for analysis by High-Throughput Sequencing (HTS). To this aim, total RNAs were extracted by using the RNeasy PowerPlant Kit (Qiagen, Germany). The RNAs were pooled, depleted of ribosomal RNA (QIAseq FastSelect; Qiagen), and a library was prepared according to the Illumina DNA Prep Kit. Sequencing on a NextSeq2000 instrument at Leibniz Institute DSMZ (Braunschweig, Germany) generated 31,149,784 of paired-end reads (150 nt), which were further analyzed in Geneious Prime version 2023.2 (Biomatters) using a custom workflow for virus discovery and genome assembly. Analysis of the assembled contigs by local BLASTn and BLASTp alignments against a custom plant virus database of NCBI nuclear-core (NC) reference sequences assigned a number of contigs to accession NC_025435, strawberry polerovirus 1 (SPV-1). Reconstruction of the virus genome by assembly of contigs and reads alignment resulted in a nearly complete genome sequence of SPV-1 (GenBank Acc. No. OR989958) showing by BLASTn 98.69% identity to the SPV-1 NC reference sequence, and 98.99 % identity with an isolate from the Czech Republic (GenBank Acc. OL421571). To confirm the presence of SPV-1 in each sample, RT-PCR using specific primers designed in this study SPV-1-CP-1F (5'-TCGAGATACGTCTAGAACTGCAA-3') and SPV-1-CP-1R (5'-GAGAGGCCCCTTCTACCTATTTG-3') targeting the entire 623 bp coat protein (CP) gene was performed. Amplicons of the expected size were obtained in five samples and Sanger-sequenced. The resulting sequences shared 99.85% - 100% of identity to the HTS - derived sequence (GenBank Acc. No. OR989958) through BLASTn analysis. Strawberry mottle virus (SMoV), strawberry mild yellow edge virus (SMYEV) and strawberry crinkle virus (SCV) were detected in the same library in addition to SPV-1 and then confirmed by RT-PCR using specific primers (Martin & Tzanetakis 2013). Strawberry polerovirus 1, related to the genus Polerovirus in the family Solemoviridae, was first reported in strawberries in Canada (Xiang et al. 2015) and was thereafter detected in the United States (Thekke-Veetil & Tzanetakis 2016), Argentina (Luciani et al. 2016), and Nepal (Kuwak et al. 2022). To date, the virus has been reported in Europe only in the Czech Republic (Franova et al. 2021). To our knowledge, this is the first report of SPV-1 in strawberry plants in Italy. Although the correlation between SPV-1 and strawberry decline (SD) is still uncertain (Xiang et al. 2015) transmission of the virus via aphids has recently been demonstrated (Franova et al. 2021). Our report let to hypothesize that its dissemination in Europe can be considered as increasing.

A novel approach to model cumulative stress: Area under the s-factor curve

ObjectiveUsing a large longitudinal sample of adults from the Midlife in the United States (MIDUS) study, the present study extended a recently developed hierarchical model to determine how best to model the accumulation of stressors, and to determine whether the rate of change in stressors or traditional composite scores of stressors are stronger predictors of health outcomes. MethodWe used factor analysis to estimate a stress-factor score and then, to operationalize the accumulation of stressors we examined five approaches to aggregating information about repeated exposures to multiple stressors. The predictive validity of these approaches was then assessed in relation to different health outcomes. ResultsThe prediction of chronic conditions, body mass index, difficulty with activities of daily living, executive function, and episodic memory later in life was strongest when the accumulation of stressors was modeled using total area under the curve (AUC) of estimated factor scores, compared to composite scores that have traditionally been used in studies of cumulative stress, as well as linear rates of change. ConclusionsLike endogenous, biological markers of stress reactivity, AUC for individual trajectories of self-reported stressors shows promise as a data reduction technique to model the accumulation of stressors in longitudinal studies. Overall, our results indicate that considering different quantitative models is critical to understanding the sequelae and predictive power of psychosocial stressors from midlife to late adulthood.

Multifarious plant growth-promoting traits of mangrove yeasts: growth enhancement in mangrove seedlings (Rhizophora mucronata) for conservation.

Plant Growth-Promoting Yeasts (PGPY) have garnered significant attention in recent years; however, research on PGPY from mangroves remains a largely unexplored frontier. This study, therefore, focused on exploring the multifaceted plant growth-promoting (PGP) capabilities of yeasts isolated from mangroves of Puthuvype and Kumbalam. The present work found that manglicolous yeasts exhibited diverse hydrolytic properties, with the predominance of lipolytic activity, in addition to other traits such as phosphate solubilization, and production of indole acetic acid, siderophore, ammonia, catalase, nitrate, and hydrogen cyanide. After screening for 15 PGP traits, three strains P 9, PV 23, and KV 35 were selected as the most potent ones. These strains also exhibited antagonistic activity against fungal phytopathogens and demonstrated resilience to abiotic stresses, making them not only promising biocontrol agents but also suited for field application. The potent strains P 9, PV 23, and KV 35 were molecularly identified as Candida tropicalis, Debaryomyces hansenii, and Aureobasidium melanogenum, respectively. The potential of these strains in enhancing the growth performance of mangrove seedlings of Rhizophora mucronata, was demonstrated using the pot-experiment. The results suggested that the consortium of three potent strains (P 9, PV 23, and KV 35) was more effective in increasing the number of shoot branches (89.2%), plant weight (87.5%), root length (83.3%), shoot height (57.9%) and total leaf area (35.1%) than the control seedlings. The findings of this study underscore the significant potential of manglicolous yeasts in contributing to mangrove conservation and restoration efforts, offering a comprehensive understanding of their diverse plant growth-promoting mechanisms and highlighting their valuable role in sustainable ecosystem management.

Spatial distribution, sources, and human health risk assessment of elevated nitrate levels in groundwater of an agriculture-dominant coastal area in Hainan Island, China

In order to comprehend the groundwater nitrate contamination in Hainan Island, which is recognized as China's sole “tropical agricultural production base,” the distribution characteristics of nitrate in different aquifers and land-use types were elucidated through hydrochemical and geostatistical analysis methods. Principal component analysis (PCA), hierarchical cluster analysis (HCA), and absolute principal component score-multiple linear regression (APCS-MLR) were employed for qualitative and quantitative analysis of the nitrate source. The results showed that NO3−-high (>88.57 mg/L) groundwater accounted for about 10 % of the total distribution area of the western coastal area in Hainan Island. Moreover, the proportions of NO3−-high groundwater in pore water and fissure water were 10 % and 7 %, respectively. The order of groundwater nitrate concentration in different land-use types was as follows: bare land, cultivated land, construction land, grassland, and woodland. The main sources of elevated nitrate concentrations in pore water were animal feces and nitrogen/potassium fertilizers, accounting for 45.4 % of the overall contribution. These substances infiltrated through the vadose zone, leaching out and mobilizing selenium within this zone, ultimately leading to the characteristic enrichment patterns observed in pore water, including nitrate, arsenic, potassium, and selenium. Furthermore, the occurrence of high nitrate in fissure water was mainly attributed to the leaching of cultured manure, septic tank leakage, and infiltration of domestic sewage, accounting for a contribution rate of 32.9 %. Simultaneously, under oxidizing conditions, selenium became activated and entered groundwater through water flow, thereby exhibiting common enrichment characteristics with nitrate and potassium in fissure water. In addition, the assessment of human health risks revealed that 16 % and 40 % of groundwater samples posed unacceptable non-carcinogenic risks to adults and children respectively, with a higher risk for local children. The study recommends the reasonable application of chemical fertilizers, as well as the strengthening of sewage treatment capacity and standardized disposal of manure and feces, to reduce nitrate contamination of groundwater at source and ensure the safety of drinking water.

Deep learning on tertiary lymphoid structures in hematoxylin-eosin predicts cancer prognosis and immunotherapy response

Tertiary lymphoid structures (TLSs) have been associated with favorable immunotherapy responses and prognosis in various cancers. Despite their significance, their quantification using multiplex immunohistochemistry (mIHC) staining of T and B lymphocytes remains labor-intensive, limiting its clinical utility. To address this challenge, we curated a dataset from matched mIHC and H&E whole-slide images (WSIs) and developed a deep learning model for automated segmentation of TLSs. The model achieved Dice coefficients of 0.91 on the internal test set and 0.866 on the external validation set, along with intersection over union (IoU) scores of 0.819 and 0.787, respectively. The TLS ratio, defined as the segmented TLS area over the total tissue area, correlated with B lymphocyte levels and the expression of CXCL13, a chemokine associated with TLS formation, in 6140 patients spanning 16 tumor types from The Cancer Genome Atlas (TCGA). The prognostic models for overall survival indicated that the inclusion of the TLS ratio with TNM staging significantly enhanced the models’ discriminative ability, outperforming the traditional models that solely incorporated TNM staging, in 10 out of 15 TCGA tumor types. Furthermore, when applied to biopsied treatment-naïve tumor samples, higher TLS ratios predicted a positive immunotherapy response across multiple cohorts, including specific therapies for esophageal squamous cell carcinoma, non-small cell lung cancer, and stomach adenocarcinoma. In conclusion, our deep learning-based approach offers an automated and reproducible method for TLS segmentation and quantification, highlighting its potential in predicting immunotherapy response and informing cancer prognosis.

A rotary lead viscoelastic damper with force-resisting capacity: Experimental verification and parametric analysis

The seismic safety of buildings can be improved by installing energy dissipators. A rotary lead viscoelastic damper (RLVD) with force-resisting capacity is proposed in this paper. RLVD consists of laminated rubber, lead rods, a cylindrical pin, and steel plates. The RLVD will rotate around the cylindrical pin when an earthquake shakes the building, resulting in the shaking energy mainly being dissipated by the plastic deformation of lead rods. To justify the reasonability and feasibility of RLVD, a prototype of RLVD was manufactured and tested under cyclic loading. The test results showed that the working mechanism of RLVD is reasonable and effective. The hysteretic curves of RLVD were plump and characterized by a bilinear behavior. A numerical model of RLVD in Abaqus was established and calibrated by the test results. A parametric analysis was conducted to further investigate the effect of the key design parameters of RLVD on its mechanical behavior. The parameter analysis showed that the number and diameter of lead rods have little effect on the mechanical properties of RLVD under the constraint of the same total cross-section area of lead rods. The yielding moment and energy dissipation of RLVD were affected by the distance from the center of the lead rod to the center of the cylindrical pin while the post-yielding stiffness of RLVD was affected by the thickness and shear modulus of the laminated rubber. The concept of the RLVD is justified.

Significant correlation between leaf vein length per unit area and stomatal density: evidence from Red Tip and Chinese photinias.

The vascular veins in photosynthetic leaves play an important role in transporting water and sugars throughout the plant body, and their venation pattern and vein density determine the hydraulic efficiency of the leaf. Likewise, stomatal density (SD) can influence photosynthetic gas exchange. However, the correlation between leaf vein density and SD is seldom reported. Herein, we examined 16 leaves from the hybrid Photinia × fraseri and 16 leaves from one of its parents, P. serratifolia, to explore the correlation between leaf vein density and SD. For each leaf, equidistant lamina quadrats were excised along two longitudinal transects (one along the midrib and another along the leaf margin). For each quadrat, micrographs of 1.2mm × 0.9mm stomatal imprints, and 2.51mm × 1.88mm micrographs of leaf veins were used to measure total vein area per leaf unit area (VAA) and total vein length per unit area (VLA), as indicators of leaf vein density, to determine the correlation between SD and leaf vein density. For each taxon, there was no significant correlation between SD and VAA, but there was a significant correlation between SD and VLA. The data indicate that SD is not positively correlated with VAA but positively correlated with VLA for both the hybrid and the parent species. This study indicates that future work should focus on the relationships between SD and total vein length per unit area rather than on total leaf vein area per unit area within and across species.

The Availability of Soil N, P, K, and Mustard Yield after the Application of Liquid Organic Fertilizer from Household Waste in Ultisols

Ultisols are one of the dominant soil orders in Indonesia, accounting for approximately 25% of the total land area. The main problem of this soil is high aluminum (Al) saturation with low pH and plant nutrients. The study was intended to determine the effect of liquid organic fertilizer (LOF) from household waste on the availability of N, P, K, and mustard yield in Ultisols. The research used a complete randomized design (CRD) with six concentrations of liquid organic fertilizer of household waste. The treatments were repeated four times. The treatment included control, 10, 20, 30,40, and 50 ml LOF in a liter of water. The study revealed that the liquid organic fertilizer from household waste increased 1.06 folds of total soil N and 1.04 folds of exchangeable-K compared to the control but did not affect available P. Also, soil pH was comparable among treatments. The greatest concentration of LOF (50 ml per liter of water) exhibited the highest yield of mustard, indicated by the highest fresh and dry shoot weight. In general, the study contributes to the development of eco-frindly agriculture.

Delineating Gastrointestinal Dysfunction Variants in Severe Burn Injury Cases: A Retrospective Case Series with Literature Review

Background: Severe burns can significantly impact various organ systems, including the gastrointestinal (GI) system. GI complications are frequently observed in patients with over 20% total body surface area (TBSA) burn. Objectives: This case series delves into the intricate phenomenology of post-burn GI dysfunction, challenging conventional cause-and-effect paradigms. Our aim is to discern, comprehend, and explore variables influencing positive and negative outcomes, laying the foundation for further research given the current heterogeneity in the literature. Methods: Severe burn patients with GI dysfunction identified between April 1, 2022, and July 31, 2022, from the institutional database are included in this retrospective case-series, and comparisons were made across baseline and treatment conditions across participants. Data were collected on demographics, burn characteristics, complications, and treatment outcomes. Results: We analysed 12 patients with severe burns and GI dysfunction and categorized them into two patterns: Pattern A, characterised by early onset symptoms, gastric and small bowel dilatation, and a relatively benign course with high recovery rates was observed in 6 patients; and Pattern B, characterised by late-onset symptoms, colonic dilatation, shock, and a high mortality rate due to megacolon was seen in 6 patients. Conclusion: The post-burn GI dysfunction observed in our study is a complex interplay of multiple factors. Adequate fluid resuscitation, timely excision of necrotic tissue, staged food ingestion, specific nutrient administration, and appropriate use of antibiotics and judicious use of selective digestive decontamination (SDD) are essential strategies to prevent and treat this syndrome.