Soybean Tolerance Research Articles

Mn3O4 Nanoenzyme Seed Soaking Enhanced Salt Tolerance in Soybean Through Modulating Homeostasis of Reactive Oxygen Species and ATPase Activities

Soybean, an important cash crop, is often affected by soil salinity, which is one of the important types of abiotic stress that affects its growth. Poly (acrylic) acid coated Mn3O4 (PMO) has been reported to play a vital role in defending against a variety of abiotic stresses in plants. To date, the effects of PMOs on soybean have not been reported; this study explored the mechanism of PMO-enhanced soybean germination under salt stress. In this experiment, 100 mg/L PMO was used as an immersion agent with a salt treatment of 150 mM NaCl. The results showed that when compared with the PMO treatment, salt stress significantly decreased the germination rate, fresh weight, carbohydrate content, and antioxidant enzyme activity of soybean and significantly increased the contents of reactive oxygen species, malondialdehyde, and osmoregulatory substances. However, PMO treatment enhanced the antioxidant defense system and significantly reduced the malondialdehyde content of soybean. Moreover, the activities of H+-ATPase and Ca2+-ATPase were significantly higher in treated soybean than in the control, and the content of ATP was also higher in treated soybean than in the control. Generally, PMO regulates the homeostasis of reactive oxygen species and reduces ATP consumption, thereby improving the ability of soybeans to germinate under salt stress. This study provides new insights into how nanomaterials improve plant salt tolerance.

Impact of Salinity Stress on Soybean Growth and Yield under Saturated Soil Culture in Tidal Lands: A Comparative Study of Tolerant Varieties

Salinity stress, intensified by climate change events such as El Niño and drought, presents a significant challenge to soybean production in tidal lands. This study evaluated soybean varieties’ growth, tolerance, and yield under varying salinity conditions within a saturated water cultivation system. The experiment was conducted from February to May 2024 at the IPB Experimental Station in Leuwikopo, Bogor, Indonesia, using soil samples collected from type B tidal lands in Mulyasari Village, Banyuasin, South Sumatra. A completely randomized design (CRD) was employed with three factors and three replications each. The first factor was soybean variety (“Demas-1” and “Detap-1”), the second was soil salinity (0 and 2000 ppm NaCl), and the third was irrigation salinity at different growth stages (control, 2000 ppm NaCl before/during flowering, and 2000 ppm NaCl after flowering). The results demonstrated that the “Demas-1” variety exhibited superior growth characteristics, including higher leaf greenness, dry weight of root nodules, and number of filled pods per plant. Exposure to soil salinity of 2000 ppm NaCl led to a significant reduction in plant height (29.38%), leaf number (38.01%), leaf greenness (28.67%), dry weight (49.90%-60.80%), and filled pods per plant (55.51%), while increasing plant toxicity (108%). Irrigation with 2000 ppm NaCl further exacerbated these negative impacts, resulting in decreased leaf greenness (15.42%-18.06%) and filled pods per plant (17.84%-23.94%). The interaction between soybean variety, soil salinity, and irrigation salinity significantly influenced the number of filled pods per plant. The combination of any soybean variety with 2000 ppm NaCl resulted in a reduction of filled pods per plant. Moreover, applying saline irrigation after flowering to saline soil decreased the number of filled pods per plant by 64.68%. These findings highlight the critical importance of selecting tolerant soybean varieties and implementing effective irrigation management strategies to mitigate the adverse effects of salinity on soybean production in tidal lands.

Knockdown of β-conglycinin α' and α subunits alters seed protein composition and improves salt tolerance in soybean.

Soybean is an important plant source of protein worldwide. Increasing demands for soybean can be met by improving the quality of its seed protein. In this study, GmCG-1, which encodes the β-conglycinin α' subunit, was identified via combined genome-wide association study and transcriptome analysis. We subsequently knocked down GmCG-1 and its paralogues GmCG-2 and GmCG-3 with CRISPR-Cas9 technology and generated two stable multigene knockdown mutants. As a result, the β-conglycinin content decreased, whereas the 11S/7S ratio, total protein content and sulfur-containing amino acid content significantly increased. Surprisingly, the globulin mutant exhibited salt tolerance in both the germination and seedling stages. Little is known about the relationship between seed protein composition and the salt stress response in soybean. Metabonomics and RNA-seq analysis indicated that compared with the WT, the mutant was formed through a pathway that was more similar to that of active salicylic acid biosynthesis; however, the synthesis of cytokinin exhibited greater defects, which could lead to increased expression of plant dehydrin-related salt tolerance proteins and cell membrane ion transporters. Population evolution analysis suggested that GmCG-1, GmCG-2, and GmCG-3 were selected during soybean domestication. The soybean accessions harboring GmCG-1Hap1 presented relatively high 11S/7S ratios and relatively high salt tolerance. In conclusion, knockdown of the β-conglycinin α and α' subunits can improve the nutritional quality of soybean seeds and increase the salt tolerance of soybean plants, providing a strategy for designing soybean varieties with high nutritional value and high salt tolerance.

Morphological Assessment of Drought Stress Tolerant Soybean Genotypes in Bangladesh

Soybean (Glycine max (L.) Merr) is the most important commercial grain legume and oil seed crop which represents the most important plant source of vegetable oil and protein in the world. The water stress tolerance of the fifty soybean genotypes was evaluated in a glasshouse at the Bangladesh Institute of Nuclear Agriculture (BINA). The study was carried out to identify the drought tolerant soybean genotype(s) for improving yield under rainfed conditions in Bangladesh. Drought stress was induced by withholding water completely from 21 days after emergence. The water stress was continued until wilting symptom persisted on plant overnight. Water stress caused an overall reduction in some morphological and yield contributing characters such as plant hight, number of branches plant-1, internode length, pod plant-1, seeds pod-1, hundred (100) seeds weight and finally the seed yield of soybean. The studied genotypes were categorized into four groups based on their yield reduction under drought stress conditions. Five genotypes YESOY-4, PK-416, Shohag, SBM-09 and Binasoybean-6 were categorized as tolerant (<35% yield reduction), fourteen genotypes were categorized as moderately tolerant (35%-60% yield reduction), twenty five genotypes were categorized as moderately susceptible (61%-80% yield reduction) and rest six genotypes were categorized as susceptible (>80% yield reduction). These five genotypes YESOY-4, PK-416, Shohag, SBM-09 and Binasoybean-6 study further for developing drought tolerant soybean verities which may be helpful for quality oil seed production.

Elevated CO2 concentration enhances plant growth, photosynthesis, and ion homeostasis of soybean under salt-alkaline stress

Salt-alkaline stress adversely affects growth and productivity of soybean. In the event of global climate change, the effects of elevated CO2 concentration (eCO2) and salt-alkaline stress on soybean remain unclear. This study investigated the combined effects of elevated CO2 concentration (700 μmol·moL−1) and salt-alkaline stress on soybean growth, gas exchange, pigments profiles, antioxidative enzyme activities, osmolyte accumulation, Na+ and K+ contents, and genes involved in ion homeostasis. This study suggested that eCO2 improved plant physiological performance due to the greater net photosynthetic rate (+212.49 %) and water use efficiency (+92.86 %). Both salt-alkaline stress and eCO2 significantly increased catalase (CAT) activity in leaves and stems, significantly increased superoxide dismutase (SOD) activity in stems, and significantly increased peroxidase (POD) activity in whole plants of soybean. eCO2 significantly inhibited Na+ absorption as indicated by decreased Na+ contents in whole plants under salt-alkaline stress accompanied by lower relative electrical conductivity, thus reducing osmotic and ionic stress. eCO2 induced enhancement of expressions of gene encoding the ion transporter of GmHKT1;2, GmHKT1;5, GmHKT1;6, GmNHX5, and GmSOS1 in stems mediated Na+ and K+ transport, thus benefiting to keep ions homeostasis. These results suggest that eCO2 contributes to enhancing soybean tolerance to saline-alkaline stress.

Soybean gene GmMLP34 regulates Arabidopsis negative response to high temperature stress

The functions of major latex proteins (MLPs) in plant defense and stress responses have been widely documented; however, their roles in HT stress response in soybeans have not been elucidated. This study investigated the role of GmMLP34, a member of the major latex protein (MLP) family, in the response of soybeans to HT stress. Transcriptome analysis of HT-resistant (JD21) and HT-sensitive (HD14) soybean leaves under HT stress (43.40 ± 1.70 °C) and field conditions revealed differential expression of GmMLP34. Further examination across different HT-resistant varieties showed that GmMLP34 was down-regulated in the leaves of 6 HT-resistant varieties (85.7 %) and up-regulated in the leaves of 6 HT-sensitive varieties (85.7 %) under the HT treatment (45 °C for 3 h). The results of this study indicate that ectopic expression of the GmMLP34 gene in Arabidopsis led to a significant decrease in the survival rate of seedling when compared to the wild type (WT) under HT stress conditions of 37/28 °C (day/night) for 5 d, Moreover, the results indicated a significant decrease in primary root length and lateral root number under 45 °C/3 h HT stress followed by 12 h room temperature recovery. Additionally, the levels of abscisic acid (ABA), and flavonoids, and the activity of the peroxidase (POD) enzyme in the antioxidant system was decreased, while the activity of the superoxide dismutase (SOD) enzyme increased in GmMLP34-overexpressing transgenic Arabidopsis thaliana. The expression levels of the HT-response genes AtCHS1 and AtCHI2-A, were significantly down-regulated, whereas that of AtGBP1 was significantly up-regulated. These results suggest that GmMLP34 negatively regulates the response of Arabidopsis thaliana to HT stress by modulating flavonoid synthesis, hormone synthesis, and the antioxidant enzyme system. These findings provide theoretical information for the genetic improvement of HT tolerance in soybean and contribute to the understanding of the molecular mechanisms underlying plant responses to abiotic stress.

Two Half-Size ATP-Binding Cassette Transporters Are Implicated in Aluminum Tolerance in Soybean.

Aluminum (Al) toxicity severely restricts plant production in acidic soils. ATP-binding cassette (ABC) transporters participate in plant tolerance to various environmental stresses. However, ABC transporters implicated in soybean Al tolerance are still rare. Here, we functionally characterized two half-size ABC transporters (GmABCB48 and GmABCB52) in soybean. Expression analysis showed that GmABCB48 and GmABCB52 were induced only in the roots, especially in the root tips. Both GmABCB48 and GmABCB52 were localized at the plasma membrane. Overexpression of GmABCB48 or GmABCB52 in Arabidopsis reduced Al accumulation in roots and enhanced Al tolerance. However, expression of GmABCB48 or GmABCB52 in yeast cells did not affect Al uptake. Furthermore, transgenic lines expressing GmABCB48 or GmABCB52 had lower Al content in root cell walls than wild-type plants under Al stress. Further investigation showed that the Al content in cell wall fractions (pectin and hemicellulose 1) of transgenic lines was significantly lower than that of wild-type plants, which was coincident with the changes of pectin and hemicellulose 1 content under Al exposure. These results indicate that GmABCB48 and GmABCB52 confer Al tolerance by regulating the cell wall polysaccharides metabolism to reduce Al accumulation in roots.

Characterization of the Regulatory Network under Waterlogging Stress in Soybean Roots via Transcriptome Analysis.

Flooding stress caused by climate change is a serious threat to crop productivity. To enhance our understanding of flooding stress in soybean, we analyzed the transcriptome of the roots of soybean plants after waterlogging treatment for 10 days at the V2 growth stage. Through RNA sequencing analysis, 870 upregulated and 1129 downregulated differentially expressed genes (DEGs) were identified and characterized using Gene Ontology (GO) and MapMan software (version 3.6.0RC1). In the functional classification analysis, "alcohol biosynthetic process" was the most significantly enriched GO term in downregulated DEGs, and phytohormone-related genes such as ABA, cytokinin, and gibberellin were upregulated. Among the transcription factors (TFs) in DEGs, AP2/ERFs were the most abundant. Furthermore, our DEGs encompassed eight soybean orthologs from Arabidopsis and rice, such as 1-aminocyclopropane-1-carboxylate oxidase. Along with a co-functional network consisting of the TF and orthologs, the expression changes of those genes were tested in a waterlogging-resistant cultivar, PI567343. These findings contribute to the identification of candidate genes for waterlogging tolerance in soybean, which can enhance our understanding of waterlogging tolerance.

QTL Detection of Salt Tolerance at Soybean Seedling Stage Based on Genome-Wide Association Analysis and Linkage Analysis.

The utilization of saline land is a global challenge, and cultivating salt-tolerant soybean varieties is beneficial for improving the efficiency of saline land utilization. Exploring the genetic basis of salt-tolerant soybean varieties and developing salt-tolerant molecular markers can effectively promote the process of soybean salt-tolerant breeding. In the study, the membership function method was used to evaluate seven traits related to salt tolerance and comprehensive salt tolerance at the soybean seedling stage; genome-wide association analysis (GWAS) was performed in a natural population containing 200 soybean materials; and linkage analysis was performed in 112 recombinant inbred lines (RIL) population to detect quantitative trait loci (QTLs) of salt tolerance. In the GWAS, 147 SNPs were mapped, explaining 5.28-17.16% of phenotypic variation. In the linkage analysis, 10 QTLs were identified, which could explain 6.9-16.16% of phenotypic variation. And it was found that there were two co-located regions between the natural population and the RIL population, containing seven candidate genes of salt tolerance in soybean. In addition, one colocalization interval was found to contain qZJS-15-1, rs47665107, and rs4793412, all of which could explain more than 10% of phenotypic variation rates, making it suitable for molecular marker development. The physical positions of rs47665107 and rs47934112 were included in qZJS-15-1. Therefore, a KASP marker was designed and developed using Chr. 15:47907445, which was closely linked to the qZJS-15-1. This marker could accurately and clearly cluster the materials of salt-tolerant genotypes in the heterozygous population tested. The QTLs and KASP markers found in the study provide a theoretical and technical basis for accelerating the salt-tolerant breeding of soybean.

Melatonin promotes nodule development enhancing soybean nitrogen metabolism under low nitrogen levels

Nitrogen availability profoundly impacts crop productivity, especially for soybeans, which exhibit a substantial demand for nitrogen. In response to the over-reliance on nitrogen fertilizers, which poses both inefficiencies and environmental concerns, the potential of melatonin in enhancing nitrogen uptake and utilization in soybeans through root irrigation was investigated. Melatonin significantly increased the activity of ammonium assimilating enzymes, thereby enhancing plant tolerance to low nitrogen levels, particularly at a concentration of 10 μM. This phenomenon has been conclusively linked to the augmented nitrogen fixation and utilization capacity, attributed to the facilitating rhizobial infection. Notably, melatonin influenced flavonoid content, specifically inducing genistein levels, essential for rhizobial infection. The malonyltransferase-encoding gene GmMaT2, which modifies isoflavones, was found to be crucial for the effects of melatonin on nodulation and nitrogen metabolism. The silence of GmMaT2 hindered the beneficial effects of melatonin on nodule development and attenuated its ability to enhance aspects of low nitrogen tolerance in soybean. It was elucidated that the potential of melatonin as a sustainable strategy for enhancing nitrogen utilization efficiency in soybeans. It provided insights into the underlying mechanisms and underscored the significance of GmMaT2 in mediating the beneficial effects induced by melatonin under low nitrogen conditions. The findings present a promising solution for mitigating agricultural costs and environmental impacts.

Insights into the ameliorative effect of ZnONPs on arsenic toxicity in soybean mediated by hormonal regulation, transporter modulation, and stress responsive genes.

Arsenic (As) contamination of agricultural soils poses a serious threat to crop productivity and food safety. Zinc oxide nanoparticles (ZnONPs) have emerged as a potential amendment for mitigating the adverse effects of As stress in plants. Soybean crop is mostly grown on marginalized land and is known for high accumulation of As in roots than others tissue. Therefore, this study aimed to elucidate the underlying mechanisms of ZnONPs in ameliorating arsenic toxicity in soybean. Our results demonstrated that ZnOB significantly improved the growth performance of soybean plants exposed to arsenic. This improvement was accompanied by a decrease (55%) in As accumulation and an increase in photosynthetic efficiency. ZnOB also modulated hormonal balance, with a significant increase in auxin (149%), abscisic acid (118%), gibberellin (160%) and jasmonic acid content (92%) under As(V) stress assuring that ZnONPs may enhance root growth and development by regulating hormonal signaling. We then conducted a transcriptomic analysis to understand further the molecular mechanisms underlying the NPs-induced As(V) tolerance. This analysis identified genes differentially expressed in response to ZnONPs supplementation, including those involved in auxin, abscisic acid, gibberellin, and jasmonic acid biosynthesis and signaling pathways. Weighted gene co-expression network analysis identified 37 potential hub genes encoding stress responders, transporters, and signal transducers across six modules potentially facilitated the efflux of arsenic from cells, reducing its toxicity. Our study provides valuable insights into the molecular mechanisms associated with metalloid tolerance in soybean and offers new avenues for improving As tolerance in contaminated soils.

Protein homeostasis and cell wall remodeling in response to jasmonate and gibberellin signals improve flood tolerance in soybean (Glycine max L.)

The establishment of soybean seedlings is sensitive to flooding, and colocalization of proteins and quantitative trait loci (QTLs) advances to narrow down the hub genes. To reveal soybean seedling tolerance to flooding, Qihuang34 (QH34), Jidou17(JD17), and their recombinant inbred lines were used in this study. Severe plant death, shorter root length, and more stress-induced proteins were observed in JD7 compared to QH34 under flooding. The major functional categories of proteins altered by flooding were similar in both cultivars, and formed a cohesive network. Protein abundance and gene expression of ribosomal protein S3 decreased in flooded JD17 compared to QH34. Through proteomics and QTL mapping, beta-glucosidase 44 and dehydrin were involved in flood tolerance. Beta-glucosidase 44 abundance, beta-glucosidase activity, and glucose content decreased in QH34 compared to JD17 during flooding. The dehydrin contained the cis-acting elements of methyl jasmonate (Me-JA) and gibberellin (GA), accompanied by increased levels of Me-JA and GA3 in flooded QH34 and JD17, respectively. These findings suggest that integrating proteomics with QTL is advantageous to identify genes associated with flood tolerance, proposing that enhanced protein homeostasis and cell wall stiffening in root tips may confer soybean seedling tolerance to flooding via GA and JA signals.

Mechanisms of Lanthanum-mediated mitigation of salt stress in soybean (Glycine max L.).

Salinity is considered one of the abiotic stresses that have the greatest impact on soybean production worldwide. Lanthanum (La) is a rare earth element that can reduce adverse conditions on plant growth and productivity. However, the regulatory mechanism of La-mediated plant response to salt stress has been poorly studied, particularly in soybeans. Therefore, our study investigated the mechanisms of La-mediated salt stress alleviation from the perspectives of the antioxidant system, subcellular structure, and metabolomics responses. The results indicated that salt stress altered plant morphology and biomass, resulting in an increase in peroxidation, inhibition of photosynthesis, and damage to leaf structure. Exogenous La application effectively promoted the activity of superoxide dismutase (SOD) and peroxidase (POD), as well as the soluble protein content, while decreasing the Na+ content and Na+/K+ ratio in roots and leaves, and reducing oxidative damage. Moreover, transmission electron microscopy (TEM) demonstrated that La prevented the disintegration of chloroplasts. Fourier-transform infrared spectroscopy (FTIR) analysis further confirmed that La addition mitigated the decline in protein, carbohydrates, and pectin levels in the leaves. Lanthanum decreased the leaf flavonoid content and synthesis by inhibiting the content of key substances in the phenylalanine metabolism pathway during NaCl exposure. Collectively, our research indicates that La reduces cell damage by regulating the antioxidant system and secondary metabolite synthesis, which are important mechanisms for the adaptive response of soybean leaves, thereby improving the salt tolerance of soybeans.

Screening and identification of salt tolerance soybean varieties and germplasms

Soil salinization is a globally prevalent abiotic environmental stress. The imbalance of ions caused by high concentrations of sodium chloride results in a 40% reduction in soybean yield. Soybean, as an important crop for soil quality improvement, necessitates the identification of salt-tolerant varieties and germplasms to effectively utilize and enhance saline-alkali land. In this study, we assessed the salt tolerance of 435 soybean varieties and germplasms during the seedling stage. Among them, Qihuang34, You2104, Hongzhudou, Pamanheidou, and Osage exhibited grade 1 salt tolerance rates surpassing other tested materials. Furthermore, Hongzhudou and Qihuang34 demonstrated higher salt tolerance during germination and emergence stages based on their elevated rates of emergence, salt tolerance index, chlorophyll content, and shoot fresh weights. Overall findings provide valuable resources for molecular breeding efforts aimed at developing salt-tolerant soybean varieties suitable for cultivation in saline-alkali soils.

Selenium Nanoparticles Boost the Drought Stress Response of Soybean by Enhancing Pigment Accumulation, Oxidative Stress Management and Ultrastructural Integrity

Drought is a persistent and devastating obstacle to crop production, affecting both humanity and livestock. The application of selenium (Se) effectively mitigates various types of abiotic stresses and enhances crop yield under unfavorable conditions. However, our understanding of how nano-Se (nSe) alleviates drought stress (DS) in soybeans is still limited. To address this gap, our study focused on assessing the effectiveness of foliar nSe application during the reproductive stage of soybeans. Three concentrations of nSe were applied to plants grown in pots filled with clay loam soil, simulating DS conditions. Our findings reveal that nSe spraying significantly promoted the accumulation of above-ground dry biomass and enhanced relative water content (RWC) and photosynthetic pigment over alone-DS treatment. Furthermore, nSe application boosted the activity and contents of protective enzymes and osmolytes, resulting in a dose-dependent reduction in electrolyte leakage (EL), reactive oxygen species (ROS) accumulation, and malondialdehyde (MDA) content. Additionally, nSe improved stomatal characteristics and mesophyll cell ultrastructure, further mitigating the adverse effects of drought stress. These findings suggest the potential of nSe as an effective strategy to enhance soybean tolerance and potentially improve crop yields under drought conditions.

GA3 and BAP phytohormone seed priming enhances germination and PEG induced drought stress tolerance in soybean by triggering the expression of osmolytes, antioxidant enzymes and related genes at the early seedling growth stages

Drought stress strongly affects seed germination and seedling development during the early stages of plant growth in soybean (Glycine max L.). Seed priming with phytohormone (PH) is known to regulate various physiological and biochemical processes that govern plant growth and yield under optimal and stress conditions. In the present study, the effects of seed priming with Gibberellic acid (GA3) (0.28 mM), 6-Benzyl aminopurine (BAP) (20 mM) and Methyl Jasmonate (MJ) (2.5 mM) was studied during germination and at early seedling growth stages in JS-335 (drought sensitive) and MAUS-71 (moderately drought tolerant) soybean varieties under PFG induced drought stress conditions. The seed priming effects were studied in terms of germination percentage and rate (Timson Index), accumulation of osmolytes (proline and glycine betaine), antioxidant enzymes activity (superoxide dismutase (SOD), ascorbate peroxidase (APX) and catalase (CAT)), and the relative expression of genes viz., Cu/Zn-superoxide dismutase copper chaperone (SOD-CCS) , iron-superoxide dismutase (SODB2) , betaine aldehyde dehydrogenase (BADH2) and dehydration-responsive element binding protein (DREB2A). The germination percentage of non-primed soybean seeds decreased under drought stress but significantly increased upon GA3 and BAP priming. Interestingly, seed priming with MJ completely inhibited the germination in both the varieties. GA3 and BAP seed priming increased proline and glycine betaine accumulation under PEG induced drought stress in both the soybean varieties. The results showed that the activities of SOD, APX and CAT were significantly enhanced in the leaves of seedlings raised from GA3 and BAP-primed seeds, as compared to the non-primed seeds under the drought stress conditions. Isozyme profiling of SOD and APX revealed that the GA3 and BAP seed priming treatments enhanced the drought-inducible expression of SOD isozymes rather than inducing novel isoforms. In case of APX isozymes, GA3 seed priming appears to preserve APX isozyme diversity in both varieties, and BAP seed priming elevated the expression of APX isoforms in both soybean varieties under the drought conditions. In response to the drought stress, relative expression of the genes associated with superoxide dismutase and glycine betaine viz., SOD CCS, SODB2, BADH2 and DREB2A was markedly upregulated in the leaves of seedlings raised from the GA3 and BAP primed seeds in both the soybean varieties. The global correlation analysis designated that the osmolyte Proline, antioxidant enzyme APX and CAT, and SOD CCS, SODB2, BADH2 and DREB2A genes were potent regulator for drought stress tolerance mechanism in soybean. This study illuminates the intricate interplay of GA3 and BAP hormonal seed priming during the germination and early seedling stages in soybean plants under the drought stress. This finding emphasizes the critical consideration of genotype specific reactions to the hormonal seed priming under PEG induced drought stress conditions.

Retraction: The intervention of classical and molecular breeding approaches to enhance flooding stress tolerance in soybean - An review.

[This retracts the article DOI: 10.3389/fpls.2022.1085368.].

Understanding the molecular mechanisms of drought tolerance in wild soybean (Glycine soja) through multi-omics-based alternative splicing predictions

The absence of adequate moisture resulting from drought poses a significant threat to both the viability and productivity of soybean cultivation. Genetic variation in common soybeans has been noticeably reduced through continuous breeding, and wild relatives with wider genetic diversity are one of the best tools in the search for new tolerance genes. In this study, we selected 139 genes co-expressed at transcript and protein levels in response to drought in Glycine soja through a multi-omics analysis. Drought stress induced co-expression of transcripts and proteins involved in dopamine synthesis within tyrosine metabolism. Polyphenol oxidase, involved in the dopamine synthesis process, was uniquely identified in both DEGs and DEPs, with its protein abundance increased. Co-expression of 9-lipoxygenase during linoleic acid metabolism was confirmed, along with consistent protein accumulation. The co-expression profiling of transcripts and proteins suggests that they may influence their regulatory feedback loops or unknown regulatory mechanisms. Additionally, we predicted the regulation of alternative splicing (AS) in response to drought. AS was predicted for 139 co-expressed genes, and four drought-tolerance-related gene candidate groups were selected. The expression levels of four genes, FT1, CCR1L, RPL18, and uncharacterized LOC114422617, varied depending on their transcript isoforms under drought stress. The occurrence of AS under drought stress may play a role in eliminating susceptibility genes or inducing tolerance genes to adapt to drought stress. Overall, this study reveals a novel mechanism of drought adaptation in wild soybean by predicting the regulation of metabolic pathways and AS events at the transcriptome and proteome levels and presents potential targets for soybean breeding.

Microwave-assisted method to morpholinyl analogue and its effect on cadmium tolerance of soybean

A series of morpholiny analogues were efficiently obtained through nucleophilic aromatic substitution (SNAr) under microwave irradiation with simple operation. Furthermore, the molecular docking studies suggested that the compound 4m could bind receptor PYR1 much more strongly than abscisic acid. Significantly, the application of 4m could reduce the permeability of cell membranes to enhance the tolerance. Furthermore, the growth of root and above-ground parts and the fresh weight was improved when treatment with 4m under cadmium stress at 200–500 mg/L. Thus, compound 4m was successfully designed and synthesized as the most potent candidate.

Identification and functional characterization of ABC transporters for selenium accumulation and tolerance in soybean

ATP-binding cassette (ABC) transporters were crucial for various physiological processes like nutrition, development, and environmental interactions. Selenium (Se) is an essential micronutrient for humans, and its role in plants depends on applied dosage. ABC transporters are considered to participate in Se translocation in plants, but detailed studies in soybean are still lacking. We identified 196 ABC genes in soybean transcriptome under Se exposure using next-generation sequencing and single-molecule real-time sequencing technology. These proteins fell into eight subfamilies: 8 GmABCA, 51 GmABCB, 39 GmABCC, 5 GmABCD, 1 GmABCE, 10 GmABCF, 74 GmABCG, and 8 GmABCI, with amino acid length 121–3022 aa, molecular weight 13.50–341.04 kDa, and isoelectric point 4.06–9.82. We predicted a total of 15 motifs, some of which were specific to certain subfamilies (especially GmABCB, GmABCC, and GmABCG). We also found predicted alternative splicing in GmABCs: 60 events in selenium nanoparticles (SeNPs)-treated, 37 in sodium selenite (Na2SeO3)-treated samples. The GmABC genes showed differential expression in leaves and roots under different application of Se species and Se levels, most of which are belonged to GmABCB, GmABCC, and GmABCG subfamilies with functions in auxin transport, barrier formation, and detoxification. Protein-protein interaction and weighted gene co-expression network analysis suggested functional gene networks with hub ABC genes, contributing to our understanding of their biological functions. Our results illuminate the contributions of GmABC genes to Se accumulation and tolerance in soybean and provide insight for a better understanding of their roles in soybean as well as in other plants.