Tissues Of Cod Research Articles

Toxicokinetic of perfluorinated compounds - A study of liver sequestration in Baltic cod (Gadus morhua callarias) and human dietary exposure

This study assessed the concentrations and temporal trends of perfluorinated compounds (PFCs) in the muscle and liver tissues of Baltic cod (Gadus morhua) from 2017 to 2023. The Environmental Quality Standard (EQS) for biota and the Estimated Weekly Intake (EWI) for human consumers were calculated to evaluate potential health risks associated with PFC exposure. Significant variations in PFC concentrations were observed across different compounds and sampling years. Perfluorooctanoic acid (PFOA) had a mean concentration ranging from 0.03 ng g⁻1 wet weight (ww) to 0.17 ng g⁻1 ww (mean: 0.093 ng g⁻1 ww), while perfluorononanoic acid (PFNA) ranged from 0.05 ng g⁻1 ww to 0.97 ng g⁻1 ww (mean: 0.46 ng g⁻1 ww). Perfluorooctane sulfonate (PFOS) demonstrated mean concentrations between 1.98 ng g⁻1 ww and 9.03 ng g⁻1 ww (mean: 4.78 ng g⁻1 ww). PFOSA exhibited the lowest liver sequestration factor, indicating a higher elimination potential. The EQS for biota, expressed in PFOA-equivalents, ranged from 9.36 ng g⁻1 ww to 28.5 ng g⁻1 ww (mean: 18.5 ng g⁻1 ww), showing an overall increasing trend over the study period. The EWI for Baltic cod muscle (ΣPFAS-4) indicated an average exposure of 1.84 ng kg⁻1 body weight (bw) per week for adults, with a maximum of 3.46 ng kg⁻1 bw per week. For cod liver consumers, the maximum exposure reached 6.45 ng kg⁻1 bw per week, exceeding the Tolerable Weekly Intake (TWI) in some cases. The rising PFC concentrations in Baltic cod, especially in liver tissues, pose health risks to consumers. Ongoing monitoring and risk assessments are essential to reduce the impacts of PFC exposure from seafood.

Dysregulation of microRNAs may contribute to neurosensory impairment in Arctic cod (Boreogadus saida) following CO2 exposure

MicroRNAs (miRNAs) are epigenetic markers with a key role in post-transcriptional gene regulation. Several studies have described the dysregulation of miRNAs in temperature and hypoxic stress responses of marine organisms, but their role in the response to acidification conditions has remained relatively underexplored. We investigated the differential expression of miRNAs in whole brain tissue of Arctic cod (Boregogadus saida) exposed to elevated aqueous CO2 levels representative of future climate change predictions. We detected the expression of 17 miRNAs of interest that are either directly or indirectly associated with reduced auditory performance; 12 of the 17 miRNAs showed significant differential expression in high treatment vs. low (control) aqueous CO2 conditions. Target gene predictions indicated that these miRNAs are likely involved with inner ear maintenance, hair cell degradation, age-related hearing loss, neural inflammation, and injury. The highest differential expression was observed in mir-135b, which is linked with increased neural inflammation and injury that may be associated with neurosensory dysfunction. Collectively, these results elucidate the contributions of miRNA mechanisms underlying CO2-induced sensory deficits in fishes facing abiotic environmental change and suggest strong potential for this approach to yield novel insights into the mechanistic effects of climate change on marine organisms.

Comparative histopathology of livers from Baltic cod infected with the parasitic nematode Contracaecum osculatum

Infection levels with the parasitic nematode Contracaecum osculatum in Eastern Baltic cod have increased in the last decades. Eastern Baltic cod is transport host for this parasite that has a high affinity for the liver of the fish. The liver is a highly vital organ and damage to the liver tissue can result in reduced functionality of the organ. Previous studies have revealed that cod with high infections loads reveal impaired physiological performance, reduced nutritional condition and show signs of having a liver disease. Yet, little is known about the pathological changes and inflammatory reactions of the cod liver related to the infections. In this study, we performed histological examinations on 30 Baltic cod livers caught in the eastern part of the Baltic Sea (length; 38 ± 0.9cm, weight; 454 ± 34.8gram) and three Sound cod livers (length; 63 ± 2.9cm, weight; 3396 ± 300.2gram) to categorize the degree of inflammation and its relation to pathological changes in infected cod livers. We further investigated how C.osculatum infection levels varied with intensity of inflammation and co-infections. We found that high infection loads with C.osculatum caused severe inflammation in the liver tissue of cod and reduced fat content of the hepatocytes. Conspicuous amounts of glycogen were found in the muscle and intestinal epithelial cells of the nematodes and parasitic co-infections occurred more frequently in the most heavily infected livers.

Ultrasensitive and selective determination of mercury in water, beverages and food samples by EDXRF and TXRF using graphene oxide modified with thiosemicarbazide

The paper presents novel analytical methods for sensitive mercury determination in various samples, i.e., waters, beverages, seafood, plants, and biological samples. The procedure is based on selective preconcentration/separation of Hg(II) ions using graphene oxide/thiosemicarbazide in dispersive micro-solid phase extraction (DMSPE) and detection by energy-dispersive (EDXRF) and total-reflection X-ray fluorescence spectrometry (TXRF). The DMSPE/EDXRF and DMSPE/TXRF procedures are characterized by very high enrichment factors and low detection limits (LODs). DMSPE/TXRF allows obtaining LODs of 2.1 pg mL−1 for liquids and 1.8 ng g−1 for solid samples. In the case of DMSPE/EDXRF, the LODs are higher, 60 pg mL−1 for liquid and 73 ng g−1 for solid samples, due to the worse sensitivity of EDXRF measurement. The method was validated using spiked samples (water, apple juice, beer, wine) and certified reference materials (seawater, groundwater, wastewater, herring, cormorant and cod tissues, pig kidney, lobster, tobacco, scallion, celery, and spinach).

Distribution of anisakid nematodes in the muscle tissue of cod (Gadus morhua) from the Norwegian Sea

Atlantic cod (Gadus morhua) is an important commercial fish species on the world market. The aim of our studies was to explore the presence, intensity of infection and distribution of the zoonotic nematodes of the different genera of Anisakidae in the muscle tissue of G. morhua from the Norwegian Sea. Cod from fishing areas FAO IIa1 (n = 50) and FAO IIa2 (n = 56) were sampled in March 2017. The unskinned flesh of each fish was examined using a white-light transilluminator. Collected parasites were identified to the genus level, and a subsample was identified using molecular methods. We found a higher prevalence of infection with Anisakis than with Pseudoterranova in the musculature of cod from both fishing areas. In FAO IIa1, a lower prevalence of infection with Pseudoterranova was recorded (14%) than in FAO IIa2 (∼39%). However, the intensity of infection was higher (53) in FAO IIa2 than in FAO IIa1 (8 parasites per fish). The opposite was found with Anisakis (prevalence 88% in FAO IIa1 and ∼55% in FAO IIa2, intensity up to 30 and up to 25 parasites per fish respectively). Most Anisakis larvae were present in the belly flaps (predominantly the left side), while Pseudoterranova spp. were dispersed with descending frequency in belly flaps, dorsal fillet and caudal fillet. Molecular identification revealed the presence of A. simplex (s.s.), P. decipiens (s.s.) and P. krabbei in both areas, and a hybrid of P. decipiens and P. krabbei in FAO IIa2.

Preparation of Three New Certified Reference Materials for Food and Environmental Analysis and Certification Using Laboratory Intercomparison as well as Primary Reference Measurement Procedures

Three new reference materials: MODAS-3 Herring Tissue (M-3 HerTis), MODAS-4 Cormorant Tissue (M-4 CormTis), and MODAS-5 Cod Tissue (M-5 CodTis) were prepared and certified on the basis of results of a worldwide intercomparison exercise. Independently of our proven method of establishing the certified and information values, the content of several essential and toxic elements was additionally determined by the use of ratio primary reference measurement procedures (definitive methods) based on radiochemical neutron activation analysis (RNAA) in the case of As, Cd, Co, Cr, Fe, Mo, Se, and U and isotope dilution mass spectrometry (IDMS) in the case of Hg, respectively. Good agreement of the established certified values and the results obtained by ratio primary reference measurement procedures confirmed the validity of the certification procedure. The total number of elements which could be certified amounted to 30, 21, 18 in M-3 HerTis, M-4 CormTis, and M-5 CodTis, respectively. The relative frequency of use of individual analytical techniques in this intercomparison campaign was calculated and discussed. Inductively coupled plasma mass spectrometry (ICP-MS) is now a dominant technique, followed by atomic absorption spectroscopy (AAS), NAA, and emission spectroscopy (ES). The decreasing share of NAA as compared to several earlier intercomparison exercises should be noticed. NAA is the only method in the array of highly sensitive methods of inorganic trace analysis, which is essentially free from blank. The lack of this method in the foreseeable future may be an obstacle in the prospective certification campaigns and may endanger the implementation of quality assurance in trace analysis.

Arsenic speciation in fish from Baltic Sea close to chemical munitions dumpsites

Chemical weapons that were dumped in seas and oceans after World War II, including the Baltic Sea, are sources of pollution of marine areas. Sunken containers can corrode, unseal, and numerous compounds pass into the environment, including toxic forms of arsenic, which are then taken up by marine animals. This study aims to quantify concentration of total arsenic, inorganic arsenic (III + V), and organic compounds arsenobetaine, monomethylarsonic acid, dimethylarsinic acid in the muscle tissues of cod, herring, sprat, and flounder and the associated risk to consumer health. Sprat muscle (0.636 mg kg−1) had the highest content of total arsenic, significantly less was noted in the muscles of herring (0.460 mg kg−1) and flounder (0.588 mg kg−1), and the least was in cod (0.390 mg kg−1). Toxic inorganic arsenic compounds were present in the fish tested at levels below 0.02 mgkg−1 and constituted from 3.45 to 5.75% of total arsenic. Arsenobetaine dominated among organic forms, and concentrations of it, like total arsenic, varied depending on the fish species. Consumer health risk was determined with the estimated daily intake, the target hazard quotient, and the carcinogenic risk. Estimated daily intake values for inorganic arsenic in herring, cod, sprat, and flounder were below the reference dose at 0.51 × 10−5 mg kg−1 b. w. day. The target hazard quotient factor of 0.0017 indicated there was no threat. Carcinogenic risk values were within the permissible range of 10−6 to 10−4. Current data indicate that inorganic arsenic compounds pose no risk to the health of consumers of Baltic fishes.

Leaching of polybrominated diphenyl ethers from microplastics in fish oil: Kinetics and bioaccumulation

Microplastics (MPs) contain high levels of polybrominated diphenyl ethers (PBDEs), which can leach to organism tissues upon ingestion, thereby leading to increased chemical exposure. However, leaching kinetics of inherent contaminants from ingested MPs are poorly studied. The present study characterized the leaching kinetics of PBDEs from sub-millimeter sized MPs in fish oil at relevant body temperatures for marine organisms and assessed exposure risk of MPs for cod fish by a biodynamic model. Diffusion coefficients (Dp) of PBDEs are in the ranges of 1.98 × 10-19–2.35 × 10-16 m2·s-1 in polystyrene, 1.89 × 10-20–2.07 × 10-18 m2·s-1 in acrylonitrile butadiene styrene, and 4.26 × 10-18–1.72 × 10-15 m2·s-1 in polypropylene. A linear function obtained between log Dp of BDE-209 and glass-transition temperature of MPs allows estimation of Dp of BDE-209 contained in other common types of MPs present in the gastrointestinal lipid. The biota-plastic accumulation factors of PBDEs for three plastics were in the range of 4.77 × 10-14–4.03 × 10-7. Although bioaccumulation of MPs-affiliated PBDEs is accelerated by oil in the gastrointestinal tract, the modeled steady-state concentrations of PBDEs in cod tissue lipid through ingestion of MPs under the most likely conditions were below the lower end of the global PBDE concentration, implicating that ingestion of MPs by organisms remains a negligible pathway in general.

Temporal Trends (1981-2013) of Per- and Polyfluoroalkyl Substances and Total Fluorine in Baltic cod (Gadus morhua).

Temporal trends from 1981 to 2013 of 28 per‐ and polyfluoroalkyl substances (PFASs) were investigated in liver tissue of cod (Gadus morhua) sampled near southeast Gotland, in the Baltic Sea. A total of 10 PFASs were detected, with ∑28PFAS geometric mean concentrations ranging from 6.03 to 23.9 ng/g ww. Perfluorooctane sulfonate (PFOS) was the predominant PFAS, which increased at a rate of 3.4% per year. Most long‐chain perfluoroalkyl carboxylic acids increased at rates of 3.9 to 7.3% per year except for perfluorooctanoate (PFOA), which did not change significantly over time. The perfluoroalkyl acid precursors perfluorooctane sulfonamide (FOSA) and 6:2 fluorotelomer sulfonic acid were detected, of which the former (FOSA) declined at a rate of –4.4% per year, possibly reflecting its phase‐out starting in 2000. An alternate time trend analysis from 2000 to 2013 produced slightly different results, with most compounds increasing at slower rates compared to the entire study period. An exception was perfluorohexane sulfonate (PFHxS), increasing at a faster rate of 3.7% measured from 2000 on, compared to the 3.0% per year measured starting from 1981. Analysis of the total fluorine content of the samples revealed large amounts of unidentified fluorine; however, its composition (organic or inorganic) remains unclear. Significant negative correlations were found between concentrations of individual PFASs (with the exception of PFOS) and liver somatic index. In addition, body length was negatively correlated with PFOA and perfluorononanoate, but positively correlated with perfluorododecanoate (PFDoDA) and FOSA. Additional studies on endocrine, immunological, and metabolic effects of PFAS in marine fish are essential to assess the environmental risk of these substances. Environ Toxicol Chem 2020;39:300–309. © 2019 SETAC

Fish embryo vulnerability to combined acidification and warming coincides with a low capacity for homeostatic regulation.

The vulnerability of fish embryos and larvae to environmental factors is often attributed to a lack of adult-like organ systems (gills) and thus insufficient homeostatic capacity. However, experimental data supporting this hypothesis are scarce. Here, by using Atlantic cod (Gadus morhua) as a model, the relationship between embryo vulnerability (to projected ocean acidification and warming) and homeostatic capacity was explored through parallel analyses of stage-specific mortality and in vitro activity and expression of major ion pumps (ATP-synthase, Na+/K+-ATPase, H+-ATPase) and co-transporters (NBC1, NKCC1). Immunolocalization of these transporters was used to study ionocyte morphology in newly hatched larvae. Treatment-related embryo mortality until hatching (+20% due to acidification and warming) occurred primarily during an early period (gastrulation) characterized by extremely low ion transport capacity. Thereafter, embryo mortality decreased in parallel with an exponential increase in activity and expression of all investigated ion transporters. Significant changes in transporter activity and expression in response to acidification (+15% activity) and warming (-30% expression) indicate some potential for short-term acclimatization, although this is probably associated with energetic trade-offs. Interestingly, whole-larvae enzyme activity (supported by abundant epidermal ionocytes) reached levels similar to those previously measured in gill tissue of adult cod, suggesting that early-life stages without functional gills are better equipped in terms of ion homeostasis than previously thought. This study implies that the gastrulation period represents a critical transition from inherited (maternal) defenses to active homeostatic regulation, which facilitates enhanced resilience of later stages to environmental factors.

Production of certified reference materials - homogeneity and stability study based on the determination of total mercury and methylmercury

ABSTRACT Reference materials (RMs) play an important role in all elements of the quality assurance system of measurements. In this work, ``package'' 4 new CRMs (bottom sediment, herring tissue, cod tissue, cormorant tissue) were prepared and characterised to carry out the quality control in monitoring analysis of mercury and methylmercury in environmental samples. Materials - candidates were collected in Poland and south part of the Czech Republic. All materials were freeze-dried, milled, sieved, homogenised, sterilized and distributed in amber bottles. For the homogeneity and stability study of the samples of materials several statistical tests were applied. Materials - candidates for CRMs with certified mercury and methylmercury content meet the heterogeneity requirement and can be considered homogenous both between bottle and within bottle. Each material meets also the requirements for the stability condition of reference material with certified mercury content.

Contaminant accumulation and biological responses in Atlantic cod (Gadus morhua) caged at a capped waste disposal site in Kollevåg, Western Norway

The aim of this study was to assess whether fish in Kollevåg, a sheltered bay on the western coast of Norway, previously utilized as a waste disposal site, could be affected by environmental contaminants leaking from the waste. Farmed, juvenile Atlantic cod (Gadus morhua) were caged for six weeks at three different locations in Kollevåg bay and at one reference location. Sediments and cod samples (bile and liver) were analyzed for polychlorinated biphenyls (PCBs), organochlorine pesticides (OCPs), brominated flame retardants (BFRs), per-and polyfluoroalkyl substances (PFASs) and polycyclic aromatic hydrocarbon (PAH) metabolites, revealing a contamination gradient at the four stations. Furthermore, hepatosomatic index (HSI) and Fulton's condition factor (CF) were significantly lower in cod caged closest to the disposal site. Levels and activities of biomarker proteins, such as vitellogenin (Vtg), metallothionein (Mt), and biotransformation and oxidative stress enzymes, including cytochrome P450 1a and 3a (Cyp1a, Cyp3a), glutathione s-transferase (Gst) and catalase (Cat), were quantified in blood plasma and liver tissue. Hepatic Cat and Gst activities were significantly reduced in cod caged at the innermost stations in Kollevåg, indicating modulation of oxidative stress responses. However, these results contrasted with reduced hepatic lipid peroxidation. Significant increases in transcript levels were observed for genes involved in lipid metabolism (fasn and acly) in cod liver, while transcript levels of ovarian steroidogenic enzyme genes such as p450scc, cyp19, 3β-hsd and 20β-hsd showed significant station-dependent increases. Cyp1a and Vtg protein levels were however not significantly altered in cod caged in Kollevåg. Plasma levels of estradiol (E2) and testosterone (T) were determined by enzyme immunoassay (EIA) and showed elevated E2 levels, but only at the innermost station. We conclude that the bay of Kollevåg did not fullfill adequate environmental condition based on environmental quality standards (EQSs) for chemicals in coastal waters. Following a six weeks caging period, environmental contaminants accumulated in cod tissues and effects were observed on biomarker responses, especially those involved in reproductive processes in cod ovary.

Ratio primary reference measurement procedure (RPRMP) for the certification of chromium content in biological reference materials

Abstract Primary reference measurement procedure for Cr determination in biological samples by radiochemical neutron activation analysis (RNAA) has been elaborated. The procedure is based on quantitative and selective separation of chromium from neutron irradiated sample by column chromatography using MnO2-Resin and determination of 51Cr by γ-ray spectrometry. Quality components have been incorporated into the RNAA method which makes it possible to meet the requirements of the definition of ratio primary reference measurement procedure. The usefulness of the elaborated procedure to assign the certified values for Cr in new certified reference material (CRMs) based on animal tissues is demonstrated. The tentative certified values for Cr have been proposed for: MODAS M-4 Cormorant Tissue and M-5 Cod Tissue CRMs.

Application of real-time quantitative PCR assays for detecting marine Brucella spp. in fish.

Brucella ceti and Brucella pinnipedialis have been documented as occurring in marine mammals, and B. ceti has been identified in 3 naturally acquired human cases. Seroconversion and infection patterns in Pacific Northwest harbor seals ( Phoca vitulina richardii) and North Atlantic hooded seals ( Cystophora cristata) indicate post-weaning exposure through prey consumption or lungworm infection, suggesting fish and possibly invertebrates play an epizootiologic role in marine Brucella transmission and possible foodborne risk to humans. We determined if real-time quantitative PCR (qPCR) assays can detect marine Brucella DNA in fish DNA. Insertion sequence (IS) 711 gene and sequence type (ST)27 primer-probe sets were used to detect Brucella associated with marine mammals and human zoonotic infections, respectively. First, DNA extracts from paired-species fish (containing 2 species) samples were tested and determined to be Brucella DNA negative using both IS 711 and ST27 primer-probe sets. A representative paired-species fish DNA sample was spiked with decreasing concentrations of B. pinnipedialis DNA to verify Brucella detection by the IS 711 primer-probe within fish DNA. A standard curve, developed using isolated DNA from B. pinnipedialis, determined the limit of detection. Finally, the IS 711 primer-probe was used to test Atlantic cod ( Gadus morhua) DNA extracts experimentally infected with the B. pinnipedialis hooded seal strain. In culture-positive cod tissue, the IS 711 limit of detection was ~1 genome copy of Brucella. Agreement between culture and PCR results for the 9 positive and 9 negative cod tissues was 100%. Although a larger sample set is required for validation, our study shows that qPCR can detect marine Brucella in fish.

Isotopic niche overlap between co-occurring capelin (Mallotus villosus) and polar cod (Boreogadus saida) and the effect of lipid extraction on stable isotope ratios

Climate change is expected to drive shifts in abundance and distribution of marine forage fishes and possibly result in dietary overlap among sub-Arctic and Arctic species. Stable isotopes of carbon and nitrogen (δ13C, δ15N) were used as a proxy of dietary niche breadth and overlap between co-occurring, immature capelin (Mallotus villosus) and polar cod (Boreogadus saida) collected in the western Canadian Arctic, Darnley Bay, NT, during August 2013. Stable isotope ratios were determined from muscle tissue to quantify the range of δ13C and δ15N, along with dietary niche breadth metrics (standard area ellipses and total area) and niche overlap between lipid-extracted and nonextracted muscle tissues of capelin and polar cod. Lipid extraction influenced the values of δ13C, δ15N, and C:N ratio in polar cod, but only δ13C in capelin tissue. Lipid extraction influenced the interpretation of dietary niche breadth and extent of overlap between co-occurring species, such that overlap of capelin within the niche of polar cod increased (from 53.0 to 89.7%) when lipids were extracted. We recommend the use of lipid extraction to standardize δ13C values when assessing dietary niches and extent of overlap between co-occurring fishes that differ in lipid content. Species-specific lipid normalization equations for δ13C ratios provided in this study can be used to correct δ13C ratios from nonextracted tissues of polar cod in future research. Overall, the high degree of dietary niche overlap between immature capelin and polar cod in the western Arctic suggests there is a high potential for competition between these fishes while immature.

A follow-up study of selected biomarkers of health in cod Gadus morhua L. collected from the southern Baltic off the Polish coast.

Selected biomarkers of health were examined in 50 post-spawning cod Gadus morhua collected in November 2015 from the southern Baltic. The biomarkers included condition factor (CF), macroscopic lesions, histopathology of spleen, liver and gonads, and morphometry of follicular atresia and hepatic and splenic melanomacrophage cells (MMC). All fish appeared in good body condition. One fish had a dermal ulcer, and in seven, macroscopic nematodes were noted within body cavity. Microscopic lesions in the liver included biliary myxozoanosis, microsporidial and necrocentric granulomas, parasitic hepatitis, multifocal necrosis, foci of cellular alterations, spongiosis, peliosis and cytoplasmic fibrillar inclusions. The spleen and gonads had microsporidial and/or necrocentric granulomas. Some of the biomarkers showed differences as compared to spawning cod collected in May from the same location in 2012, most importantly values an order of magnitude lower for splenic MMC in post-spawning fish. In post-spawning fish, there were statistically significant correlations between MMC, CF, follicular atresia, parasitic hepatitis and microsporidiosis. This is the first comparison of biomarkers of health in post-spawning and spawning Baltic cod. Future studies need to examine the relationships of biomarkers to levels of pollutants in the environment and in tissues of cod.

Surgical treatment of a metastatic melanoma patient after targeted therapy

The article presents issues of diagnosis, course of disease, results of target therapy and surgery of a patient with metastatic melanoma Material and methods. Patient B., aged 19, referred to the department of tumors of the skin and soft tissues of COD № 1MOH KR with complaints on painful tumors in soft tissues of the body, right thigh and left inguinal area. On the basis of the examination she was diagnosed skin metastatic melanoma with multiple soft tissue lesions in the body, right thigh, left inguinal area and left ovary. The patient had surgical treatment: left laparoscopic adnexectomy, left inguinal-femoral lymphadenectomy, surgical excision of multiple soft tissue tumors in the body and right thigh. Results. We achieved a partial response to vemurafenib in the patient that allowed further surgical treatment. The postsurgical period was rather tolerable; the patient was discharged from the hospital under the surveillance of a cancer specialist near her place of residence.

SEDIMENT PERMEABILITY AND THE PRESERVATION OF SOFT-TISSUES IN CONCRETIONS: AN EXPERIMENTAL STUDY

Sediment permeability is hypothesized to affect soft tissue fossilization within concretions through its effects on organic decay and concretion growth. The role of permeability was tested in a series of experiments in which cod tissue was decayed in glass beads of varying permeabilities. Decay was measured using infrared gas analysis (IRGA), and mineral precipitation within the beads (a proxy for concretion growth) was measured using micro CT scanning. The interactions of the three variables—sediment permeability, decay, and mineralization—were assessed with MANOVA and with linear regressions of decay and precipitation per unit decay on permeability. These two linear regressions were combined into a more general, nonlinear expression of the relationship between permeability and total mineral precipitation. The results show that sediment permeability has two competing effects on precipitation, the strength of each varying dynamically depending on permeability. Low permeability environments inhibit decay, thus enhancing fossilization but inhibiting overall precipitation because a build-up of decay products is necessary to promote mineral formation (the “decay effect”). However, low permeability environments can also increase precipitation per unit decay by inhibiting the diffusion of decay products away from the carcass, allowing for a faster build-up of decay products (the “mineralization effect”). At low permeabilities, the decay effect dominates (decay controlled), and precipitation is positively correlated with permeability. At higher permeabilities, the mineralization effect dominates (permeability controlled), and precipitation is negatively correlated with permeability. The experiments show that fossilization within concretions is promoted by decay inhibition (at low permeabilities) and rapid concretion growth (at intermediate permeabilities). Thus, the effects of permeability on fossilization are complex, and influence the mechanism of fossilization.

Characterization and expression analyses of five interferon regulatory factor transcripts (Irf4a, Irf4b, Irf7, Irf8, Irf10) in Atlantic cod (Gadus morhua)

The interferon regulatory factor (IRF) family of genes encodes a group of transcription factors that have important roles not only in regulating the expression of Type I interferons (IFNs) and other genes in the IFN pathway, but also in growth, development and the regulation of oncogenesis. In this study, several IRF family members (Irf4a, Irf4b, Irf7, Irf8, Irf10) in Atlantic cod (Gadus morhua) were characterized at the cDNA and putative amino acid levels, allowing for phylogenetic analysis of these proteins in teleost fish, as well as the development of gene-specific primers used in RT-PCR and quantitative PCR (QPCR) analyses. Two Atlantic cod Irf10 splice variants were identified and their presence confirmed by sequencing of the Irf10 genomic region. RT-PCR showed that Irf7, Irf8 and both Irf10 transcripts were expressed in all 15 cod tissues tested, while Irf4a and Irf4b were absent in some tissues. QPCR analysis of spleen expression expanded upon this, and upon previous work. All IRF transcripts in the study were responsive to stimulation by the viral mimic poly(I:C), and all except Irf4a were responsive to exposure to formalin-killed Aeromonas salmonicida (ASAL). These IRF genes, thus, are likely important in the cod immune response to both viral and bacterial infections. Increased temperature (10 °C to 16 °C) was also observed to modulate the antibacterial responses of all IRF transcripts, and the antiviral responses of Irf4b and Irf10-v2. This research supports earlier studies which reported that elevated temperature modulates the expression of many immune genes in Atlantic cod.

Selenium and mercury molar ratios in commercial fish from the Baltic Sea: Additional risk assessment criterion for mercury exposure

BackgroundMercury content in fish poses risks to the fish and to those who consume them. The aim of the current study was to verify the protective role of selenium against toxic mercury in Baltic fish. The assessment criteria were the Se:Hg molar ratio, its variability depending on species and tissue, and correlations among Se:Hg ratios, mercury concentration, and specimen length. Assays were performed in muscle and liver tissues of Baltic Sea commercial fish species, i.e., cod, herring, sprat, plaice, and turbot. ResultsMercury concentrations in fish from the Baltic Sea are at low level. The values of the Se:Hg molar ratio were higher than 1 (with the exception of a few cod specimens), with ranges in muscle tissues as follows: cod 0.75–28.2; herring 2.0–50.3; sprat 14.2–56.2; flatfish 1.5–35.1; and in livers as follows: cod 10.9–268.2; herring 10.7–87.1; flatfish 10.2–232. The values of the Se:Hg ratio in muscle and liver tissues were negatively correlated with mercury content and specimen length. ConclusionMercury concentrations in commercial fish from the Baltic Sea are low and do not pose risks to consumers. The high values of the Se:Hg molar ratio confirm that mercury levels are safe, and also that selenium might offer protection against methylmercury toxicity, which could increase the safety of fish consumption. The values of the Se:Hg molar ratio could be an additional criterion, in addition to measuring Hg concentrations, for evaluating the risk of mercury exposure in fish from the Baltic Sea.