Shoot Tissues Research Articles

Comparative RNA-seq analysis reveals transposable element-mediated transcriptional reprogramming under phosphorus-starvation stress in rice (Oryza sativa L.)

Phosphorus (P) deficiency hinders crop productivity of 50 % of the rice grown in Asia, Africa, and South America. About 90 % of the phosphate in fertilizers applied to the crops gets fixed in the soil, reducing its availability to plants. This necessitates increased use of phosphatic fertilizers leading to higher cost of cultivation and environmental pollution. Although molecular mechanisms of P-deficiency tolerance in rice are being deciphered, the role of transposable elements (TEs) in transcriptional reprogramming under P-starvation/deficiency stress has not yet been reported. To investigate the role of Pup1 QTL in controlling TE-mediated reprogramming of gene expression, a pair of contrasting rice [Pusa-44 and its Near-Isogenic Line (NIL)-23] genotypes were grown hydroponically under control and stressed (0 ppm Pi) conditions. Comparative RNA-seq analysis of root and shoot tissues from 45-day-old plants of the rice genotypes revealed TE-mediated transcriptional reprogramming affecting biological processes and cellular components. Significantly up-regulated expression of several TEs under P-starvation stress, controlled by Pup1 QTL, particularly in shoots of NIL-23 indicates their crucial role in P homeostasis. Moreover, comparative physio-biochemical analyses confirmed the stress tolerance of NIL-23. Several biological processes including DNA replication/repair, metabolism, signaling, and phosphorylation were modulated through differential (mainly up-regulated) expression of TEs (controlled by Pup1 QTL) in shoots of NIL-23 under P-starvation. To the best of our knowledge, this is a pioneer study on the role of TEs in reprogramming biological processes/molecular functions/cellular components involved in P-use efficiency in rice under stress. The findings advance our understanding of the functions of Pup1 to improve the P-use efficiency/productivity of rice in P-deficient soils.

Quantitative Proteomic Analysis of Brassica Napus Reveals Intersections Between Nutrient Deficiency Responses.

Macronutrients such as nitrogen (N), phosphorus (P), potassium (K) and sulphur (S) are critical for plant growth and development. Field-grown canola (Brassica napus L.) is supplemented with fertilizers to maximize plant productivity, while deficiency in these nutrients can cause significant yield loss. A holistic understanding of the interplay between these nutrient deficiency responses in a single study and canola cultivar is thus far lacking, hindering efforts to increase the nutrient use efficiency of this important oil seed crop. To address this, we performed a comparative quantitative proteomic analysis of both shoot and root tissue harvested from soil-grown canola plants experiencing either nitrogen, phosphorus, potassium or sulphur deficiency. Our data provide critically needed insights into the shared and distinct molecular responses to macronutrient deficiencies in canola. Importantly, we find more conserved responses to the four different nutrient deficiencies in canola roots, with more distinct proteome changes in aboveground tissue. Our results establish a foundation for a more comprehensive understanding of the shared and distinct nutrient deficiency response mechanisms of canola plants and pave the way for future breeding efforts.

The effect of spermidine supplementation on polyamine metabolism and Fusarium infection in Linum usitatissimum

Flax (Linum usitatissimum) is a valuable industrial crop in temperate climate zones. However, the prevalence of fungal diseases, particularly those caused by Fusarium oxysporum sp. linii, poses a substantial threat, leading to significant crop losses and diminished interest in flax cultivation. In this study, flax plants were treated with spermidine and subsequently infected with Fusarium oxysporum to investigate multiple aspects: (1) the uptake of exogenous spermidine by the plants, (2) the impact of this uptake on the levels of other polyamines and the expression of polyamine biosynthesis genes, and (3) the effects of fungal infection on these parameters. The results demonstrated that flax plants effectively absorb spermidine, leading to substantial changes in the levels of polyamines and the expression of related genes in both roots and shoots. Notably, spermidine treatment resulted in significant alterations in the levels of putrescine and spermine, as well as in the transcript levels of key genes involved in polyamine biosynthesis. Moreover, Fusarium oxysporum infection itself induced changes in polyamine content and gene expression, which varied between root and shoot tissues. When spermidine-treated plants were infected with Fusarium oxysporum, a more complex response was observed, characterized by modifications in polyamine levels and gene expression that suggest an enhanced defense mechanism against the pathogen. These findings indicate that polyamine treatment not only affects the infection process but also modulates the plant's internal polyamine metabolism and gene expression, contributing to an improved resistance to fungal attack. This study highlights the potential of spermidine as a protective agent in flax and provides a foundation for further exploration of polyamine-related defense mechanisms.

Development, Chlorophyll Content, and Nutrient Accumulation in In Vitro Shoots of Melaleuca alternifolia under Light Wavelengths and 6-BAP.

In vitro cultivation of Melaleuca could contribute to the cloning of superior genotypes. Studies of factors affecting micropropagation are needed, such as the interaction with light-emitting diodes (LEDs) and plant growth regulators added to the culture media. This study aimed at better understanding the effects of spectra on the development and physiology of melaleuca cultivated in vitro, as well as the interaction of LEDs with the main cytokinin used in micropropagation, N6-Benzylaminopurine (6-BAP). 6-BAP, spectra, and their interaction had a significant effect on most of the variables analyzed, altering the in vitro development and chlorophyll concentrations in the plants, as well as changing different variables in the culture medium, such as pH, EC, and levels of Ca2+, Mg2+, and P, and nutrient accumulation in the shoots. The results demonstrate that the main effects of adding BAP to the in vitro cultivation of melaleuca are an increase in the number of shoots, which resulted in greater fresh and dry masses; a reduction in height and chlorophyll content; complete inhibition of adventitious rooting; higher consumption of Mg, and lower consumption of Ca and P from the culture medium; higher content of Fe, and lower content of P, S, Mn, Cu and B in the in vitro shoot tissues.

Midwinter Flower Bud and Shoot Tissue Cold Hardiness in 33 Peach Cultivars Grown in New Hampshire, USA

Cold tolerance was measured midwinter in a New Hampshire, USA, orchard collection of 33 peach and nectarine cultivars over 3 years using natural and artificial freezing methods. Flower bud survival and xylem and cambium hardiness were based on the inflection point from nonlinear regression, as well as comparisons of injury at about −20 °C. Flower bud hardiness was greatest in ‘BuenOs’, ‘Contender’, ‘Cresthaven’, ‘Redhaven’, and ‘Scarlet Rose’. The lowest hardiness occurred in ‘Brigantine’, ‘Desiree’, ‘Emeraude’, ‘Evelynn’, ‘Galaxy’, ‘Glenglo’, ‘Jade’, ‘PF5D’, ‘PF23’, ‘Silverglo’, ‘Spring Snow’, and ‘Sugar May’. Other cultivars had either intermediate or inconsistent year-to-year bud hardiness. Bud hardiness in 2021 was weakly correlated with bud hardiness in 2023, but neither were correlated with bud mortality in 2022 after a severe freeze. Cambial hardiness in one year was not correlated with hardiness in other years. ‘August Rose’, ‘BuenOs’, ‘Cresthaven’, ‘Desiree’, and ‘Silverglo’ had the hardiest cambium which was consistent from year to year. Xylem hardiness was greatest in ‘BuenOs’, ‘Contender’, ‘Desiree’, ‘John Boy’, ‘PF17’, ‘Redhaven’, ‘Silvergem’, and ‘TangOs’. Xylem injury was significantly correlated across years indicating that this tissue responds more consistently to midwinter freezing temperatures than flower buds and cambium.

New simple sequence repeat markers reveal undetected diversity in Spanish and Californian Diplodia sapinea populations

Diplodia sapinea is the causal agent of Diplodia shoot blight, an emerging disease affecting pine forests worldwide. The range expansion of this pathogen in northern Europe has been suggested to be partially facilitated by recent warmer conditions. Although D. sapinea has been studied extensively, critical aspects of its infection biology and population structure remain unexplored. In this study, we developed nine simple sequence repeat (SSR) markers mined from D. sapinea genomes to assess the genetic diversity at higher resolution. Isolates from northern Spain, an area formerly regarded as having low genetic diversity and samples from a Californian population that was formerly regarded as clonal, were analysed in the study. In Spain, the nine SSR markers identified 56 genotypes in 285 samples. Isolates from symptomatic shoots, cones and asymptomatic tissues collected from different stands, suggested admixture between local populations. The same genotype tended to dominate within a single cone, and the same genotypes were usually found in both symptomatic and asymptomatic shoot tissues. The nine new SSR markers developed in this study revealed a high level of genetic diversity in both the northern Spanish and northern Californian populations than previous anticipated. Analyses using these nine SSR markers should contribute to a better understanding of the epidemiology, evolution and origin of D. sapinea, a pathogen that is gaining prominence in many parts of the world.

Phosphorus uptake 1 (Pup1) QTL performs major regulatory functions under phosphorus starvation/deficiency stress in rice (Oryza sativa L.)

Phosphorus (P) is an essential macronutrient required for respiration, photosynthesis/carbohydrate metabolism, redox homeostasis, signaling, and synthesis/function of nucleic acids, cellular membranes, enzymes, etc. To cope with P-deficiency, plants reprogram gene expression for necessary alterations in metabolic/signaling pathways. To attain P homeostasis, plants readjust metabolism through transcriptional, post-transcriptional, and/or post-translational machinery involving biochemical, physiological, genomic, epigenomic, proteomic, and metabolomic functions. However, the underlying molecular mechanisms/pathways/genes for P-deficiency tolerance in crop plants remain elusive. To decipher the mechanisms/pathways adopted by rice under P-starvation/deficiency stress, a pair of contrasting rice [Pusa-44 (high-yielding, P-deficiency sensitive) and its near-isogenic line (NIL)-23, P-deficiency tolerant) for Pup1 QTL] genotype was used for comparative analyses. Omics analyses of shoot and root tissues from 45-day-old plants grown hydroponically in P-sufficient (16 ppm Pi), P-deficient (4 ppm Pi) or P-starved (0 ppm Pi) medium revealed important roles of P transporters, transcription factors (TFs), Transposable elements (TEs), auxin-responsive proteins, cell wall modulation, fatty acid metabolism, and chromatin architecture/epigenetic modifications in making NIL-23 tolerant to stress. The proteins involved in photosynthesis, sucrose-/starch-/energy-metabolism, transcription factors, and phytohormone signaling were observed to be differentially expressed in NIL-23. Since only a few coding genes are located on the QTL, modulations in morpho-physio-biochemical and molecular parameters under P-starvation/deficiency stress were attributed to the regulatory functions of Pup1 through TFs, TEs, epigenetic/chromatin architectural changes, etc. introgressed in Pusa-44 genetic background. Thus, the study provides new insights into molecular/regulatory functions of Pup1 under P-starvation/deficiency stress in rice, which might be useful to improve P-use efficiency in rice for better productivity in P-deficient soils.

Heat stress tolerance in wheat seedling: Clustering genotypes and identifying key traits using multivariate analysis

Elevated atmospheric heat is considered as one of the bottlenecks for global wheat production. Screening potential wheat genotypes against heat stress and selecting some suitable indicators to assist in understanding thermotolerance could be crucial for sustaining wheat cultivation. Accordingly, 80 diverse bread wheat genotypes were evaluated in controlled lab condition by imposing a week-long heat stress (35/25 °C D/N) at the seedling stage. The response of heat stress was evaluated using multivariate analysis techniques on 20 morpho-physiological traits. Results showed significant variations in the studied traits due to the imposition of heat stress. Eleven seedling traits that contributed significantly to the genotypic variability were identified using principal component analysis (PCA). A substantial correlation between most of the selected seedling attributes was observed. Hierarchical cluster analysis identified three distinct clusters among the tested wheat genotypes. Cluster 1, consisting of 33 genotypes, exhibited the highest tolerance to heat stress, followed by Cluster 2 (18 genotypes) with moderate tolerance and Cluster 3 (29 genotypes) showing susceptibility. Linear discriminant analysis (LDA) approved that nearly 93 % of the wheat genotypes were appropriately ascribed to each cluster. The squared distance analysis confirmed the distinct nature of the clusters. Using multi-trait genotype-ideotype distance index (MGIDI), all 12 identified tolerant genotypes (BG-30, BD-468, BG-24, BD-9908, BG-32, BD-476, BD-594, BD-553, BD-488, BG-33, BD-495, and AS-10627) originated from Cluster 1. Selection gain in MGIDI analysis, broad-sense heritability, and multiple linear regression analysis together identified shoot and root dry and fresh weights, chlorophyll contents (a and total), shoot tissue water content, root-shoot dry weight ratio, and efficiency of photosystem II (PS II) as the most vital discriminatory factors explaining heat stress tolerance of 80 wheat genotypes. The identified genotypes with superior thermotolerance would offer resourceful genetic tools for breeders to improve wheat yield in warmer regions. The traits found to have greater contribution in explaining heat stress tolerance will be equally important in prioritizing future research endeavors.

Optimization of phosphorus and potassium use efficiency of rice (Oryza sativa L) under different flood depths within the Everglades Agricultural Area

Rice cultivation in South Florida, especially within crop rotation systems, presents a promising avenue for mitigating phosphorus (P) levels in drainage water by optimizing nutrient absorption across varying flooding conditions. This study aimed to assess the impacts of different flooding depths on rice growth and nutrient efficiency while exploring the interrelationships among these factors. Conducted over a two-year period, the field study involved planting a single rice variety (Diamond: 95 kg ha−1, long-grain, short-season) at four distinct flooding depths (5, 10, 15, and 20 cm) without fertilizer application. Results revealed minimal effects of flooding depths on root and shoot length or dry matter accumulation. Additionally, concentrations of total P and potassium (K) in both shoot and root tissues remained consistent across the different flooding depths. Despite the absence of P and K fertilizer inputs, no significant changes were observed in P use efficiency (PUE), K use efficiency (KUE), or water use efficiency (WUE). Cultivating rice under optimal flood depths of 5 cm within the Everglades Agricultural Area (EAA) demonstrated potential for conserving water and essential nutrients such as P and K. These findings highlight the feasibility of rice cultivation in fertile soils as a means to decrease nutrient (P and K) concentrations in drainage water, thereby promoting sustainable agricultural practices in the region.

Microbial colonisation rewires the composition and content of poplar root exudates, root and shoot metabolomes

BackgroundTrees are associated with a broad range of microorganisms colonising the diverse tissues of their host. However, the early dynamics of the microbiota assembly microbiota from the root to shoot axis and how it is linked to root exudates and metabolite contents of tissues remain unclear. Here, we characterised how fungal and bacterial communities are altering root exudates as well as root and shoot metabolomes in parallel with their establishment in poplar cuttings (Populus tremula x tremuloides clone T89) over 30 days of growth. Sterile poplar cuttings were planted in natural or gamma irradiated soils. Bulk and rhizospheric soils, root and shoot tissues were collected from day 1 to day 30 to track the dynamic changes of fungal and bacterial communities in the different habitats by DNA metabarcoding. Root exudates and root and shoot metabolites were analysed in parallel by gas chromatography-mass spectrometry.ResultsOur study reveals that microbial colonisation triggered rapid and substantial alterations in both the composition and quantity of root exudates, with over 70 metabolites exclusively identified in remarkably high abundances in the absence of microorganisms. Noteworthy among these were lipid-related metabolites and defence compounds. The microbial colonisation of both roots and shoots exhibited a similar dynamic response, initially involving saprophytic microorganisms and later transitioning to endophytes and symbionts. Key constituents of the shoot microbiota were also discernible at earlier time points in the rhizosphere and roots, indicating that the soil constituted a primary source for shoot microbiota. Furthermore, the microbial colonisation of belowground and aerial compartments induced a reconfiguration of plant metabolism. Specifically, microbial colonisation predominantly instigated alterations in primary metabolism in roots, while in shoots, it primarily influenced defence metabolism.ConclusionsThis study highlighted the profound impact of microbial interactions on metabolic pathways of plants, shedding light on the intricate interplay between plants and their associated microbial communities.2SWtA3_gUD-Xt4Z7N25436Video

Genome-Wide Identification and Characterization of Alternative Oxidase (AOX) Genes in Foxtail Millet (Setaria italica): Insights into Their Abiotic Stress Response.

Alternative oxidase (AOX) serves as a critical terminal oxidase within the plant respiratory pathway, playing a significant role in cellular responses to various stresses. Foxtail millet (Setaria italica), a crop extensively cultivated across Asia, is renowned for its remarkable tolerance to abiotic stresses and minimal requirement for fertilizer. In this study, we conducted a comprehensive genome-wide identification of AOX genes in foxtail millet genome, discovering a total of five SiAOX genes. Phylogenetic analysis categorized these SiAOX members into two subgroups. Prediction of cis-elements within the promoter regions, coupled with co-expression network analysis, intimated that SiAOX proteins are likely involved in the plant's adaptive response to abiotic stresses. Employing RNA sequencing (RNA-seq) and real-time quantitative PCR (RT-qPCR), we scrutinized the expression patterns of the SiAOX genes across a variety of tissues and under multiple abiotic stress conditions. Specifically, our analysis uncovered that SiAOX1, SiAOX2, SiAOX4, and SiAOX5 display distinct tissue-specific expression profiles. Furthermore, SiAOX2, SiAOX3, SiAOX4, and SiAOX5 exhibit responsive expression patterns under abiotic stress conditions, with significant differences in expression levels observed between the shoot and root tissues of foxtail millet seedlings. Haplotype analysis of SiAOX4 and SiAOX5 revealed that these genes are in linkage disequilibrium, with Hap_2 being the superior haplotype for both, potentially conferring enhanced cold stress tolerance in the cultivar group. These findings suggest that both SiAOX4 and SiAOX5 may be targeted for selection in future breeding programs aimed at improving foxtail millet's resilience to cold stress.

Soil heavy metals contamination and health risk of an endemic plant in southeast of Damavand Mt., Iran

Considering the toxicological effects of some heavy metals (HMs) in which directly related to mortality and carcinogenicity in the population by their entrance from plants through livestock grazing, and medical skin cream, the rehabilitation of contaminated sites through phytoremediation by native plants might be quite challenging. Diplotaenia damavandica Mozaff. ex-Hedge & Lamond, is used as medical skin creams due to the existence of specific ingredients, which can be effective in treating skin disease. In the present study, the plant and associated soil sampling were performed around the boundary of D. damavandica. The concentration was measured using the Inductively coupled plasma mass spectrometry (ICP-MS). The results revealed the effect of existing endemic plants on reducing the average concentration of lead and zinc in soil by 40 and 60%, respectively, due to phytoremediation. EDX confirmed the presence of Pb and Zn in root and shoot tissues. Based on the results of this study, D. damavandica is an endemic perennial herbaceous plant with 60% biomass and prosperous root systems, which can grow in low contaminated areas of Pb in the southeast of Damavand Mt. Hence, the HMs pattern indicated less often in the aerial parts except for lead, which should be examined more carefully for skin cream uses.

Screening potential plants in the gold mining area for phytoremediation approach

Abstract Heavy metal waste can be caused by anthropogenic activity. This waste can pollute soil and water far from the source. One of the ways to immobilize the heavy metals is using a plant that can accumulate them. This research aimed to screen potential plants that can be used as remediation agents due to ASGM activity in the post-mining area. This study was conducted at PT Napal Umbar Picung (NUP), Tanggamus Regency, Lampung. The study collected the potential hyperaccumulator plant from contaminated areas. Plant samples were dried at 80°C for three days in a ventilated oven. The dried samples were powdered using the Philips Blender 5000 series into fine-grained sizes. The powder samples were analyzed using X-ray fluorescence (XRF). The highest concentrations of As, Cd, Fe, Hg, Ni, Pb, and Zn in the shoot tissues of ASGM at PT NUP were 285.8 mg/kg, 11.7 mg/kg, 258,320 mg/kg, 501.6 mg/kg, 57.4 mg/kg, 806.2 mg/kg, and 4,520 mg/kg. The results showed that the hyperaccumulator plant of Hg was Alpinia galanga. Christella sp. Chromolaena odorata, Clidemia hirta, Melastoma malabathricum, and Nephrolepis cordifolia. This study can conclude that the plants can be used as a phytoremediation approach to heavy metals contamination such as As, Cd, Fe, Ni, Pb, Zn, and especially Hg.

Conservation and Divergence of PEPC Gene Family in Different Ploidy Bamboos.

Phosphoenolpyruvate carboxylase (PEPC), as a necessary enzyme for higher plants to participate in photosynthesis, plays a key role in photosynthetic carbon metabolism and the stress response. However, the molecular biology of the PEPC family of Bambusoideae has been poorly studied, and the function of its members in the growth and development of Bambusoideae is still unclear. Here, we identified a total of 62 PEPC family members in bamboo. All the PEPC genes in the bamboo subfamily were divided into twelve groups, each group typically containing significantly fewer PEPC members in Olyra latifolia than in Phyllostachys edulis, Dendrocalamus latiflorus and Dendrocalamus brandisii. The results of an intraspecific and interspecies collinearity analysis showed that fragment replication and whole genome replication were the main driving forces of bamboo PEPC members. Furthermore, the Ka/Ks values of collinear genes showed that bamboo PEPC experienced purification selection. In addition, the promoter region of PEPC genes contains cis-acting elements related to light response, plant hormone response and response to stress. An analysis of the expression levels of the PEPC family in different developmental stages and tissues of bamboo shoots has shown that PhePEPC7, PhePEPC9 and PhePEPC10 were highly expressed in the leaves of non-flowering plants and culms. Furthermore, PhePEPC6 was significantly upregulated in leaves after GA treatment. Further research has shown that PhePEPC6 was mainly localized in the cell membrane. This provides a solid bioinformatics foundation for further understanding the biological functions of the bamboo PEPC family.

Nitrogen and zinc supplements can enhance morphology and physiology traits of maize at early growth stages

Several studies emphasized the importance of zinc for better morpho-physiology in plants. The co-application of Zn can reduce N loss by increasing its uptake rates, but whether N level can affect Zn accumulation in different plant organs is not well studied. This experiment aimed to examine the impact of different levels of nitrogen and zinc on the morphology, physiology and nutrient uptake of maize, and whether different N levels would affect Zn accumulation. Two maize genotypes were grown hydroponically. Nitrogen was supplemented in two different concentrations, combined with two Zn concentrations. Zn level did not affect the shoot or the root dry weight of either genotype under optimal N level, but did under reduced N level. Reduced N level resulted in significantly higher root dry weight under both Zn concentrations in both genotypes. Significantly higher nitrogen remobilization rate was found at reduced N level in both genotypes. Optimal N level resulted in higher shoot and root N and Zn contents in both genotypes. The uptake of Zn was enhanced by optimal N compared to reduced N level, where the impact of genotypes was also observable. Reduced N level decreased both optimal and actual photochemical efficiency of photosystem II, and pigment contents of both genotypes. It could be concluded that N and Zn use efficiency is highly dependent on the genetic characteristics of maize genotypes, but optimal N supply is required for better incorporation of Zn into shoot and root tissues.

The Arabidopsis thaliana ecotype Ct-1 achieves higher salt tolerance relative to Col-0 via higher tissue retention of K+ and NO3-

Agriculture is vital for global food security, and irrigation is essential for improving crop yields. However, irrigation can pose challenges such as mineral scarcity and salt accumulation in the soil, which negatively impact plant growth and crop productivity. While numerous studies have focused on enhancing plant tolerance to high salinity, research targeting various ecotypes of Arabidopsis thaliana has been relatively limited. In this study, we aimed to identify salt-tolerant ecotypes among the diverse wild types of Arabidopsis thaliana and elucidate their characteristics at the molecular level. As a result, we found that Catania-1 (Ct-1), one of the ecotypes of Arabidopsis, exhibits greater salt tolerance compared to Col-0. Specifically, Ct-1 exhibited less damage from reactive oxygen species (ROS) than Col-0, despite not accumulating antioxidants like anthocyanins. Additionally, Ct-1 accumulated more potassium ions (K+) in its shoots and roots than Col-0 under high salinity, which is crucial for water balance and preventing dehydration. In contrast, Ct-1 plants were observed to accumulate slightly lower levels of Na+ than Col-0 in both root and shoot tissues, regardless of salt treatment. These findings suggest that Ct-1 plants achieve high salinity resistance not by extruding more Na+ than Col-0, but rather by absorbing more K+ or releasing less K+. Ct-1 exhibited higher nitrate (NO3-) levels than Col-0 under high salinity conditions, which is associated with enhanced retention of K+ ions. Additionally, genes involved in NO3- transport and uptake, such as NRT1.5 and NPF2.3, showed higher transcript levels in Ct-1 compared to Col-0 when exposed to high salinity. However, Ct-1 did not demonstrate significantly greater resistance to osmotic stress compared to Col-0. These findings suggest that enhancing plant tolerance to salt stress could involve targeting the cellular processes responsible for regulating the transport of NO3- and K+. Overall, our study sheds light on the mechanisms of plant salinity tolerance, emphasizing the importance of K+ and NO3- transport in crop improvement and food security in regions facing salinity stress.

Comparative analysis of bacterial populations in sulfonylurea-sensitive and -resistant weeds: insights into community composition and catabolic gene dynamics

This study aimed to compare the impact of iodosulfuron-methyl-sodium and an iodosulfuron-based herbicidal ionic liquid (HIL) on the microbiomes constituting the epiphytes and endophytes of cornflower (Centaurea cyanus L.). The experiment involved biotypes of cornflower susceptible and resistant to acetolactate synthase inhibition, examining potential bacterial involvement in sulfonylurea herbicide detoxification. We focused on microbial communities present on the surface and in the plant tissues of roots and shoots. The research included the synthesis and physicochemical analysis of a novel HIL, evaluation of shifts in bacterial community composition, analysis of the presence of catabolic genes associated with sulfonylurea herbicide degradation and determination of their abundance in all experimental variants. Overall, for the susceptible biotype, the biodiversity of the root microbiome was higher compared to shoot microbiome; however, both decreased notably after herbicide or HIL applications. The herbicide-resistant biotype showed lower degree of biodiversity changes, but shifts in community composition occurred, particularly in case of HIL treatment.Graphical

Integrative phenotyping analyses reveal the relevance of the phyB-PIF4 pathway in Arabidopsis thaliana reproductive organs at high ambient temperature

BackgroundThe increasing ambient temperature significantly impacts plant growth, development, and reproduction. Uncovering the temperature-regulating mechanisms in plants is of high importance, for increasing our fundamental understanding of plant thermomorphogenesis, for its potential in applied science, and for aiding plant breeders in improving plant thermoresilience. Thermomorphogenesis, the developmental response to warm temperatures, has been primarily studied in seedlings and in the regulation of flowering time. PHYTOCHROME B and PHYTOCHROME-INTERACTING FACTORs (PIFs), particularly PIF4, are key components of this response. However, the thermoresponse of other adult vegetative tissues and reproductive structures has not been systematically evaluated, especially concerning the involvement of phyB and PIFs.ResultsWe screened the temperature responses of the wild type and several phyB-PIF4 pathway Arabidopsis mutant lines in combined and integrative phenotyping platforms for root growth in soil, shoot, inflorescence, and seed. Our findings demonstrate that phyB-PIF4 is generally involved in the relay of temperature signals throughout plant development, including the reproductive stage. Furthermore, we identified correlative responses to high ambient temperature between shoot and root tissues. This integrative and automated phenotyping was complemented by monitoring the changes in transcript levels in reproductive organs. Transcriptomic profiling of the pistils from plants grown under high ambient temperature identified key elements that may provide insight into the molecular mechanisms behind temperature-induced reduced fertilization rate. These include a downregulation of auxin metabolism, upregulation of genes involved auxin signalling, miRNA156 and miRNA160 pathways, and pollen tube attractants.ConclusionsOur findings demonstrate that phyB-PIF4 involvement in the interpretation of temperature signals is pervasive throughout plant development, including processes directly linked to reproduction.

Effects of Limiting Nitrate Concentration on Morphological and Differential Expression of High- and Low-Affinity Nitrate Transporter Genes of Diverse Wheat Genotypes

Nitrate uptake in wheat is an essential and complex process that involves multiple proteins. Roots are the major plant organs that take nitrate molecules from the soil and transport them to the above-ground parts. They involve several high- and low-affinity nitrate transporters located in the plasma membrane of different root and shoot tissues. In the present study, we investigated the responses of different selected wheat genotypes, released in India for different agroclimatic regions in a different year, for their biomass, root traits, and expression of high- and low-affinity nitrate transporters genes under optimal and limiting nitrate conditions at the 14 days seedling stage. The maximum number of genotypes showed increased biomass and total root size (TRS) under nitrate starvation, which indicates that the variation of TRS traits in different genotypes responds differently to nitrate starvation. Gene expression of TaNRT2.1-4 showed up-regulated expression under low external N-concentration in all genotypes. Among the four TaNRT1.1 orthologs, TaNPF6.1 and TaNPF6.4 showed up-regulated expression, whereas TaNPF6.2 and TaNPF6.3 expressed down-regulated in root at higher nitrate concentrations. TaNRT1.1 (TaNPF7.1 and TaNPF7.2) showed up-regulated in root at optimum nitrate concentrations. TaNPF6.1, TaNPF6.4, TaNPF7.1, and TaNPF7.2 showed a typical expression of low-affinity nitrate transporter genes under optimum external N-concentrations. Our findings indicate that HD2967, NP890, and VL804 showed the highest expression of TaNRT2.1-4, TaNRT1.1, and TaNRT1.5, respectively, possibly involved in nitrate uptake and translocation (from root to shoot).

Arsenic tolerance in Tagetes erecta L.: Phytoaccumulation, physicochemical and anatomical studies through electron microscopy

Arsenic (As), a toxic metalloid that is becoming more and more concentrated in the environment, poses risks to human health, plant production, and species at every trophic level through bioaccumulation and biomagnification. Finding tolerant and hyperaccumulative plant species that can be used in contaminated land is a potential eco-friendly strategy for As removal in terms of its mitigation. Tagetes erecta L. is an ornamental plant species chosen as phytoremediator plant for As removal. To assess the morphological and biochemical changes we conducted pot experiments with plants that were treated with different concentration of sodium arsenate (Na3AsO4) for up to 60 days. Atomic absorption spectrophotometer (AAS) was used to measure the amount of As absorbed in various tissues of the plant. Highest As accumulation was detected in root tissues (12.864 mg kg−1), whereas shoot had least quantity of As (3.443 mg kg−1). With increasing As concentrations, the maximum levels of proline and polyphenol were 14.743 µ mol g−1 and 4.25 mg g−1, respectively. At 60 days, antioxidant enzymes APX (6.952 mM mg−1), CAT (2.143 mM mg−1), and GR (76.631 mM mg−1) were found to be increased. As transport and distribution were confirmed by anatomical analysis in root and shoot tissues by FESEM-EDX, TEM, and light microscopy. The results obtained after morpho-physiological and anatomical studies are in favor of high degree of tolerance of As concentration (25 mg kg−1) by T. erecta suggesting that it could be a potential phytoremediator of As from polluted soil.