This paper investigates the robust attitude tracking control problem for a rigid-flexible coupling spacecraft. First, the dynamic model for a rigid-flexible coupling spacecraft is established based on the first-order approximation method to fully reveal the coupling effect between rigid movement and flexible displacement when the spacecraft is in rapid maneuver. In the condition that flexible vibration measurements are not available, an robust output feedback controller which is independent of model is presented using Lyapunov method with considering state-independent disturbances. To resolve the chattering problem caused by the discontinuous sign function, a modified continuous output feedback controller is proposed by introducing functions with continuous property. Rigorous proof is achieved showing that the proposed control law ensures asymptotic stability and guarantees the attitude of a rigid-flexible spacecraft to track a time-varying reference attitude based on angle and angular velocity measurements only. Finally, simulations are carried out to verify the simplicity and effectiveness of the proposed control scheme.