Time-dependent Fluorescence Spectroscopy Research Articles

Exploration of the impact of graphene oxide, acetylenic gemini, and CTAT on the photophysical and aggregation properties of dipolar coumarin 153.

Advanced spectroscopic techniques have been utilized to study the interaction between the laser dye coumarin 153 (C153) and graphene oxide (GO) nanoparticles. GO was synthesized using a modified Hummers' method and characterized by UV-vis spectroscopy, Raman laser spectroscopy, FTIR-ATR spectroscopy, FESEM, HR-TEM, and XRD techniques. The GO@C153 composite was formed by mixing two aqueous solutions of GO and C153 due to their strong interaction through stacking and hydrophobic interactions. In this case, GO acts as an effective fluorescence quencher for C153 molecules, which undergo H-type aggregation in the presence of GO. The Stern-Volmer equation and time-dependent fluorescence studies were utilized to analyse the mechanism of fluorescence quenching. According to the findings, both static and dynamic quenching processes are responsible for the reduction in fluorescence intensity. The effect of surfactants (both cetyltrimethylammonium p-toluenesulfonate (CTAT) and synthesized N,N'-dihexadecyl-N,N,N',N'-tetramethyl-N,N'-but-2-ynediyl-di-ammonium chloride (16-4-16)) on the aggregation and photophysical properties of the dye was investigated using surface tensiometry, conductometry, UV-vis absorption spectroscopy, steady-state fluorescence measurements, DLS, and time-dependent fluorescence spectroscopy. Surfactants change the microenvironment of the C153 dye, leading to spectrum shifting and a higher quantum yield, which causes a rapid rise in fluorescence intensity in the micellar medium. It has been noted that in a micellar medium rather than in an aqueous one, the luminous intramolecular charge transfer (ICT) state of C153 stabilises. Lastly, we investigated the photophysical behavior of the GO-C153-micelle ternary system and discovered that, in the presence of a micellar medium, the quenched and blue-shifted (H-type aggregation) fluorescence peak of C153 (in the presence of GO) began to intensify once more. The main goal of this work is to create an effective and fairly cost powerful fluorescence sensor. Additionally, the ternary system (GO-C153-micelle) analytical idea can be employed to identify the onset of micelle formation. In wastewater treatment analysis, the GO-C153-surfactant ternary system concept can also be used to regenerate the adsorbent (in this case, GO) from dye molecules by allowing the dye molecules to exit the adsorbent and enter the micellar medium.

Oxidation-Sensitive Core-Multishell Nanocarriers for the Controlled Delivery of Hydrophobic Drugs.

A synthetic route for oxidation-sensitive core-multishell (osCMS) nanocarriers was established, and their drug loading and release properties were analyzed based on their structural variations. The nanocarriers showed a drug loading of 0.3-3 wt % for the anti-inflammatory drugs rapamycin and dexamethasone and the photosensitizer meso-tetra-hydroxyphenyl-porphyrin (mTHPP). Oxidative processes of the nanocarriers were probed in vitro by hydrogen peroxide, and the degradation products were identified by infrared spectroscopy supported by ab initio calculations, yielding mechanistic details on the chemical changes occurring in redox-sensitive nanocarriers. Oxidation-triggered drug release of the model drug Nile Red measured and assessed by time-dependent fluorescence spectroscopy showed a release of up to 80% within 24 h. The drug delivery capacity of the new osCMS nanocarriers was tested in ex vivo human skin with and without pretreatments to induce local oxidative stress. It was found that the delivery of mTHPP was selectively enhanced in skin under oxidative stress. The number and position of the thioether groups influenced the physicochemical as well as drug delivery properties of the carriers.

Temperature-dependent radiative lifetime of Yb:YLF: refined cross sections and potential for laser cooling

We revisit the spectroscopic characterization of ytterbium-doped LiYF4 (Yb:YLF) for the application of laser cooling. Time-dependent fluorescence spectroscopy reveals a temperature dependence of the radiative lifetime which we explain by the Boltzmann distribution of excited ions in the upper Stark levels. The emission cross sections of Yb:YLF from 17 K to 440 K are revised using the temperature-dependent radiative lifetimes from fluorescence spectra. We provide fit equations for the peak values of important transitions as a function of temperature, which is also useful for the design of Yb:YLF laser oscillators and amplifiers operated at cryogenic temperatures. Based on our spectroscopic data, we show the prerequisite crystal purity to achieve laser cooling below liquid nitrogen temperatures.

Redox-Responsive Nanocarrier for Controlled Release of Drugs in Inflammatory Skin Diseases.

A synthetic route for redox-sensitive and non-sensitive core multi-shell (CMS) carriers with sizes below 20 nm and narrow molecular weight distributions was established. Cyclic voltammetric measurements were conducted characterizing the redox potentials of reduction-sensitive CMS while showcasing its reducibility through glutathione and tris(2-carboxyethyl)-phosphine as a proof of concept. Measurements of reduction-initiated release of the model dye Nile red by time-dependent fluorescence spectroscopy showed a pronounced release for the redox-sensitive CMS nanocarrier (up to 90% within 24 h) while the non-sensitive nanocarriers showed no release in PBS. Penetration experiments using ex vivo human skin showed that the redox-sensitive CMS nanocarrier could deliver higher percentages of the loaded macrocyclic dye meso-tetra (m-hydroxyphenyl) porphyrin (mTHPP) to the skin as compared to the non-sensitive CMS nanocarrier. Encapsulation experiments showed that these CMS nanocarriers can encapsulate dyes or drugs with different molecular weights and hydrophobicity. A drug content of 1 to 6 wt% was achieved for the anti-inflammatory drugs dexamethasone and rapamycin as well as fluorescent dyes such as Nile red and porphyrins. These results show that redox-initiated drug release is a promising strategy to improve the topical drug delivery of macrolide drugs.

Time-Dependent Fluorescence Spectroscopy to Quantify Complex Binding Interactions.

Measuring the binding affinity for proteins that can aggregate or undergo complex binding motifs presents a variety of challenges. In this study, fluorescence lifetime measurements using intrinsic tryptophan fluorescence were performed to address these challenges and to quantify the binding of a series of carbohydrates and carbohydrate-functionalized dendrimers to recombinant human galectin-3. Collectively, galectins represent an important target for study; in particular, galectin-3 plays a variety of roles in cancer biology. Galectin-3 binding dissociation constants (KD) were quantified: lactoside (73 ± 4 μM), methyllactoside (54 ± 10 μM), and lactoside-functionalized G(2), G(4), and G(6)-PAMAM dendrimers (120 ± 58 μM, 100 ± 45 μM, and 130 ± 25 μM, respectively). The chosen examples showcase the widespread utility of time-dependent fluorescence spectroscopy for determining binding constants, including interactions for which standard methods have significant limitations.

Hybrid equilibrium-nonequilibrium molecular dynamics approach for two-dimensional solute-pump/solvent-probe spectroscopy.

There has been a tremendous effort in accessing liquid-phase solvation dynamics using ultrafast spectroscopies for decades. It is recently demonstrated that one can go beyond tracking the relaxation of the solute-solvent interaction energy as reported in traditional time-dependent fluorescence spectroscopy. Combining a resonant solute pump with a subsequent nonresonant 4-wave-mixing light-scattering solvent probe gives rise to two-dimensional solute-pump/solvent probe (SPSP) spectroscopy, which displays the nonequilibrium relaxation of the intermolecular vibrations after the solute gets electronically excited. However, the response function of the SPSP spectra has been challenging to calculate, even on the classical-mechanical level, due to the difficulty of evaluating the surviving Poisson bracket. In this work, a hybrid equilibrium-nonequilibrium molecular dynamics simulation approach is proposed where the Poisson bracket can be estimated using nonequilibrium molecular dynamics. Applying the resulting numerically exact formalism and the previously proposed hybrid instantaneous-normal-mode/molecular-dynamics approach to a preferential solvation model system reveals that the SPSP spectroscopy provides an alternative measure for solvation dynamics, which is more sensitive to the local solvent structures than the traditional energetic dynamics measured in the time-dependent fluorescence spectroscopy.

A Chemiluminescent Metal-Organic Framework.

The synthesis and characterization of a chemiluminescent metal-organic framework with high porosity is reported. It consists of Zr6 O6 (OH)4 nodes connected by 4,4'-(anthracene-9,10-diyl)dibenzoate as the linker and luminophore. It shows the topology known for UiO-66 and is therefore denoted PAP-UiO. The MOF was not only obtained as bulk material but also as a thin film. Exposure of PAP-UiO as bulk or film to a mixture of bis-(2,4,6-trichlorophenyl) oxalate, hydrogen peroxide, and sodium salicylate in a mixture of dimethyl and dibutyl phthalate evoked strong and long lasting chemiluminescence of the PAP-UiO crystals. Time dependent fluorescence spectroscopy on bulk PAP-UiO and, for comparison, on dimethyl 4,4'-(anthracene-9,10-diyl)dibenzoate provided evidence that the chemiluminescence originates from luminophores being part of the PAP-UiO, including the luminophores inside the crystals.

Photoluminescence of Solvent-Selected Fluorescent Moieties in MEH-PPV Solutions and Films

In this work, we examined how photoluminescence in poly[2-methoxy-5-(2-ethylhexyloxy)-1,4-phenylenevinylene] (MEH-PPV) is affected by morphology, dictated by the mode of preparation. For that, MEH-PPV dilute solutions in good and non-solvents, thick cast films with poly[methylmethacrylate] (PMMA) as inert matrix and spin-coated thin films were prepared. These systems were studied by steady-state and time-dependent fluorescence spectroscopy and electronic microscopy. Unexpected photoluminescent behavior was detected in solutions and films and it was related to different excitons modulated by MEH-PPV conformation. By semi empirical calculations we obtained the singlet and triplet state energies of an MEH-PPV model system and, from time-resolved fluorescence spectroscopy, the existence of short-lived excited states was revealed, enabling us to infer on possible singlet fission in MEH-PPV-based systems.

Nanoengineering of a Supramolecular Gel by Copolymer Incorporation: Enhancement of Gelation Rate, Mechanical Property, Fluorescence, and Conductivity.

In the quest to engineer the nanofibrillar morphology of folic acid (F) gel, poly(4-vinylpyridine-co-styrene) (PVPS) is judiciously integrated as a polymeric additive because of its potential to form H-bonding and π-stacking with F. The hybrid gels are designated as F-PVPSx gels, where x denotes the amount of PVPS (mg) added in 2 mL of F gel (0.3%, w/v). The assistance of PVPS in the gelation of F is manifested from the drop in critical gelation concentration and increased fiber diameter and branching of F-PVPSx gels compared to that of F gel. PVPS induces a magnificent improvement of mechanical properties: a 500 times increase of storage modulus and ∼62 times increase of yield stress in the F-PVPS5 gel compared to the F gel. The complex modulus also increases with increasing PVPS concentration with a maximum in F-PVPS5 gel. Creep recovery experiments suggest PVPS induced elasticity in the otherwise viscous F gel. The fluorescence intensity of F-PVPSx gels at first increases with increasing PVPS concentration showing maxima at F-PVPS5 gel and then slowly decreases. Gelation is monitored by time-dependent fluorescence spectroscopy, and it is observed that F and F-PVPSx gels exhibit perfectly opposite trend; the former shows a sigmoidal decrease in fluorescence intensity during gelation, but the latter shows a sigmoidal increase. The gelation rate constants calculated from Avrami treatment on the time-dependent fluorescence data manifest that PVPS effectively enhances the gelation rate showing a maximum for F-PVPS5 gel. The hybrid gel exhibit 5 orders increase of dc conductivity than that of F-gel showing semiconducting nature in the current-voltage plot. The Nyquist plot in impedance spectra of F-PVPS5 xerogel exhibit a depressed semicircle with a spike at lower frequency region, and the equivalent circuit represents a complex combination of resistance-capacitance circuits attributed to the hybrid morphology of the gel fibers.

2-Carbamido-1,3-indandione - a Fluorescent Molecular Probe and Sunscreen Candidate.

The present work reports theoretical and experimental studies on the photophysical properties of two tautomeric forms of 2-carbamido-1,3-indandione (CAID). By means of UV-vis, steady-state and time-dependent fluorescence spectroscopy it is shown that both enol forms, 2-(hydroxylaminomethylidene)-indan-1,3-dione and 2-carboamide-1-hydroxy-3-oxo-indan, coexist in solution. On the base of spectroscopic studies of CAID interaction with human serum albumin and DNA sequences, it was shown that the compound has potential and it is suitable for use as fluorescent molecular probe for investigation of different biomolecules. CAID shows relatively high photostability within 3h irradiation period. Such behavior of the investigated compound supposes possibilities for using of the CAID molecule as sunscreen because of strong absorption in UVA, UVB and UVC light spectra.

Triggering hairpin-free chain-branching growth of fluorescent DNA dendrimers for nonlinear hybridization chain reaction.

We present a nonlinear hybridization chain reaction (HCR) system in which a trigger DNA initiates self-sustained assembly of quenched double-stranded substrates into fluorescent dendritic nanostructures. During the process, an increasing number of originally sequestered trigger sequences labeled with fluorescent reporters are freed up from quenched substrates, leading to chain-branching growth of the assembled DNA dendrimers and an exponential increase in the fluorescence intensity. The triggered assembly behavior was examined by PAGE analysis, and the morphologies of the grown dendrimers were verified by AFM imaging. The exponential kinetics of the fluorescence accumulation was also confirmed by time-dependent fluorescence spectroscopy. This method adopts a simple sequence design strategy, the concept of which could be adapted to program assembly systems with higher-order growth kinetics.

Adsorption of naphthalene and indole on F300 MOF in liquid phase by the complementary spectroscopic, kinetic and DFT studies

Metal–organic frameworks (MOFs) are the promising functional materials for adsorption in liquid phase. It is important to understand the details of chemical bonding between the aromatic and heteroaromatic adsorbates and major structural units in the MOF sorbent—metal coordinatively unsaturated sites (CUS) and organic linkers. In this paper, we report the mechanistic studies of adsorption of naphthalene and indole on F300 Basolite MOF by two complementary spectroscopic methods and density functional theory (DFT) calculations. Fluorescence spectra, the near-UV/visible diffuse reflectance spectroscopy (near-UV/VIS DRS) and DFT calculations suggest that naphthalene forms an adsorption complex with F300 MOF where naphthalene is quantum confined within the cavity of the F300, weakly electronically bound to the Fe(III) CUS, and strongly dispersively stabilized by side interactions with the benzene rings of the linker of F300. On the other hand, indole forms an adsorption complex with F300 MOF in which indole is electronically bound to the Fe(III) CUS and dispersively stabilized by the side interactions with benzene rings of the linker. Coordination bonds between indole and F300 MOF in the adsorption complex are detected by geometry optimization using the DFT method, and electronic spectra are calculated by the time-dependent-DFT method. The direct spectroscopic proof of the formation of adsorption complex with coordination bonds between indole and F300 MOF is provided by the complementary near-UV/VIS DRS spectroscopy (new absorption bands at 460–660 nm), the wavelength-dependent fluorescence spectroscopy (new fluorescence bands at 410 and 430 nm) and by the time-dependent fluorescence spectroscopy.

Implementing electrostatic polarization cannot fill the gap between experimental and theoretical measurements for the ultrafast fluorescence decay of myoglobin

Over the past few years, time-dependent ultrafast fluorescence spectroscopy method has been applied to the study of protein dynamics. However, observations from these experiments are in a controversy with other experimental studies. Participating of theoretical methods in this debate has not reconciled the contradiction, because the predicted initial relaxation from computer simulations is one-order faster than the ultrafast fluorescence spectroscopy experiment. In those simulations, pairwise force fields are employed, which have been shown to underestimate the roughness of the free energy landscape. Therefore, the relaxation rate of protein and water molecules under pairwise force fields is falsely exaggerated. In this work, we compared the relaxations of tryptophan/environment interaction under linear response approximation employing pairwise, polarized, and polarizable force fields. Results show that although the relaxation can be slowed down to a certain extent, the large gap between experiment and theory still cannot be filled.

Does the Dynamic Stokes Shift Report on Slow Protein Hydration Dynamics?

The time-dependent fluorescence frequency shift of protein-attached probes has a much slower decay than that for the free probe. The decay times, ranging from 10 ps to several nanoseconds, have been attributed to hydration water motions several orders of magnitude slower than those in the hydration shell of small solutes. This interpretation deviates strongly from the prevailing picture of protein hydration dynamics. We argue here that the slow decay in the fluorescence shift can be explained by a ubiquitous solvent polarization mechanism, with no need to invoke slow water motions or a dynamic coupling with protein motions. This mechanism can be qualitatively understood with the aid of a dielectric continuum model. We therefore conclude that the long decay times measured with time-dependent fluorescence spectroscopy contain no information about protein hydration dynamics.

Photophysics of 1-ethynylpyrene-modified RNA base adenine

The photophysical behaviour of a pyrene-modified adenine base is examined. Time-dependent absorption and fluorescence spectroscopy is used to shed light on the fluorescence behavior and the charge transfer between the fluorophore and the nucleobase. The results from TCSPC, fluorescence upconversion and pump-probe absorption spectroscopy are reported, compared and analyzed. This study is a prerequisite for the detailed characterization of RNA dynamics in real time and on a molecular time scale.

The Nucleotide-Binding Site of the <I>Escherichia coli</I> DnaC Protein: Molecular Topography of DnaC Protein–Nucleotide Cofactor Complexes

The structure of the nucleotide-binding site of the Escherichia coli replication factor DnaC protein and the effect of the nucleotide cofactor on the protein structure have been examined using ultraviolet, steady-state, and time-dependent fluorescence spectroscopy. Emission spectra and quenching studies of the fluorescent nucleotide analogs, 3'-O-(N-methylantraniloyl)-5'-triphosphate (MANT-ATP) and 3'-O-(N-methylantraniloyl)-5'-diphosphate (MANT-ADP), bound to the DnaC protein indicate that the nucleotide-binding site forms a hydrophobic cleft on the surface of the protein. Fluorescence decays of free and bound MANT-ATP and MANT-ADP indicate that cofactors exist in two different conformations both, free and bound to the protein. However, the two conformations of the bound nucleotides differ in their solvent accessibilities. Moreover, there are significant differences in the solvent accessibility between ATP and ADP complexes. Specific binding of magnesium to the protein controls the structure of the binding site, particularly, in the case of the ATP complex, leading to additional opening of the binding site cleft. Both tyrosine and tryptophan residues are located on the surface of the protein. The tryptophans are clustered at a large distance from the nucleotide-binding site. However, in spite of a large spatial separation, binding of both cofactors induces significant and different changes in the structure of the environment of tryptophans, indicating long-range structural effects through the DnaC molecule. Moreover, only ATP induces changes in the distribution of the tyrosine residues on the surface of the protein. The data reveal that the nucleotide-DnaC protein complex is a sophisticated allosteric system, responding differently to the ATP and ADP binding.

The RNA Helicase DbpA Exhibits a Markedly Different Conformation in the ADP-bound State When Compared with the ATP- or RNA-Bound States

The motor enzymes that belong to the family of RNA helicases catalyze the strand separation of duplex RNA via ATP hydrolysis. Among these enzymes, Escherichia coli DbpA is a unique RNA helicase because it possesses ATPase-specific activity toward the peptidyl transferase center in 23 S ribosomal RNA. For this reason, it has been the subject of numerous biochemical and structure-function studies. The ATP-stimulated unwinding activity of DbpA toward specific and nonspecific RNA duplexes has been demonstrated. However, the underlying molecular and structural basis, which facilitates its helicase activities, is presently not known. We combined time-dependent limited proteolysis digestion, fluorescence spectroscopy, and three-dimensional structural homology modeling techniques to study the structural conformations of DbpA with respect to its binding to stoichiometric ratios of RNA and cofactors. We show that the conformational state of DbpA is markedly different in the ADP-bound state than in any other state (ATP- or RNA-bound). These results, together with structural homology studies, suggest that a hinge region located in the core domain of DbpA mediates such conformational changes.

Differential effects of tricyclic antidepressant drugs on membrane dynamics—a fluorescence spectroscopic study

The effect of tricyclic antidepressant drugs amitriptyline, nortriptyline, imipramine and desipramine on synaptosomal membrane and lipid bilayer was studied using steady state and time dependent fluorescence spectroscopy of lipid specific fluorescent probe 1,6-diphenyl-1,3,5-hexatriene (DPH). The synaptosomal membrane was prepared from rat brain while liposomes were prepared from dimyristoyl phosphatidyl choline (DMPC) alone and a mixture of DMPC and cholesterol. Upon treatment with amitriptyline and nortriptyline a decrease was observed in the steady state anisotropy of DPH in DMPC liposomes as well as in rat brain synaptosomes. On the other hand, imipramine and desipramine did not cause any significant change. Amitriptyline and nortriptyline also decreased the steady state anisotropy of DPH in liposomes prepared from a mixture of DMPC and cholesterol. Fluorescence decay time and time dependent anisotropy of DPH in both the membranes were measured and the decay of anisotropy was analyzed using wobbling in cone model. Amitriptyline and nortriptyline treatment decreased the limiting anisotropy and order parameter, while the cone angle increased. Imipramine and desipramine did not cause significant change in these parameters. In addition to structural alterations, these drugs inhibited the activity of Na +-K +-ATPase in synaptosomal membrane, however, the decrease was more in case of amitriptyline and nortriptyline as compared to imipramine and desipramine. Our results suggest that the perturbation in membrane order caused by antidepressant drugs could depend on the net charge on the drug molecule.

Interactions of the beta-ionone ring with the protein in the visual pigment rhodopsin control the activation mechanism. An FTIR and fluorescence study on artificial vertebrate rhodopsins.

The photoreactions of rhodopsin regenerated with three 9-cis retinal analogs, modified at or in the vicinity of the beta-ionone ring (namely 5,6-epoxy, 7,8-diH, diethyl-acyclic) have been investigated by UV-vis and FTIR difference spectroscopy. In parallel, the ability to catalyze the GDP-->GTP exchange of G-protein (transducin) has been monitored by time-dependent fluorescence spectroscopy. The first photoproduct obtained with all three pigments at liquid nitrogen temperature is a blue-shifted intermediate (BSI), followed by a lumi-like intermediate at 170 K. For the 5,6-epoxy-ISO and 7,8-diH-ISO pigment we obtain two further intermediates similar to the META-I and META-II states of native RHO. For the diethyl-acyclic-ISO pigment only one further intermediate can be stabilized at 280 K. As compared to META-II the respective photoproduct exhibits striking differences. The latter two pigments have also been investigated in the solubilized lipid-free state (detergent: dodecyl maltoside) at 280 K. For the 5,6-epoxy-ISO pigment, the UV-vis, FTIR, and activation data agree with the formation of a META-II-like photoproduct (81% activation). Less META-II formation is observed for the 7,8-dihydro-ISO pigment in membranes (65% activation), but full formation in detergent (100% activation). Neither the membrane-bound nor the solubilized diethyl-acyclic-ISO pigment forms a META-II-like intermediate (18% and 0% activation, respectively). Therefore, we conclude that the substitution of the beta-ionone ring by two ethyl groups abolishes steric interactions with the protein, which are essential for META-II formation.(ABSTRACT TRUNCATED AT 250 WORDS)