With the completed establishment of the Beidou global navigation satellite system (BDS-3), the BDS constellation is qualified for the global positioning, navigation and timing (PNT) services. The simultaneous observed B1I/B3I signals of the BDS-2 and BDS-3 satellites facilitate the BDS-2/BDS-3 joint precise point positioning (PPP) solution. For reasons related to the modulation modes, signal property, receiver front end design, precise satellite clock products arising from the different analysis centers and so on, BDS pseudorange biases are absorbed by the pseudorange measurements, including the pseudorange bias variation, signal distortion bias (SDB) and time delay bias (TDB). The large magnitude of the BDS pseudorange biases will degrade the BDS PPP performance. Herein, the simultaneous estimation of the BDS pseudorange biases are applied in BDS PPP and totally six pseudorange biases processing strategies are presented. The magnitudes of the existed BDS SDB and TDB are analyzed. The statistics showed that the BDS PPP performance in term of the convergence time and positioning accuracy can be remarkably improved by considering the BDS pseudorange biases. By comparing the BDS PPP performance in different scenarios, we recommend three processing schemes that are reducing weight of the BDS-2 pseudorange observations, estimating the BDS TDB as constant and neglecting the SDB, and estimating the BDS SDB as the constant per satellite. The analytical results can facilitate the optimal BDS PPP performance.