There have been ongoing efforts to improve membrane surfaces by adding specific functional groups through physical or chemical approaches to minimize fouling propensity. This study introduces a facile grafting and deposition approach to enhance the performance of thin film composite polyamide reverse osmosis (TFC PA RO) membrane. The synergistic effects of l-glutamine and Cu nanoparticles in altering the physico-chemical properties and improving desalination performances were investigated. The l-glutamine improved the hydrophilicity of membrane, while Cu NPs offered significant antibacterial characteristics to improve the functionality of membrane. The findings revealed that TFC-l-glutamine/Cu3 showed optimum performance with water flux of 16.5 L.m−2 h−1 and salt rejection of 96.8 % at an operating pressure of 1.5 MPa. The TFC-l-glutamine/Cu3 membrane exhibited an absence of dense colonies against both S. aureus and E. coli, on account of the antibacterial effectiveness of Cu NPs. The S. aureus- and E. coli-fouled TFC-l-glutamine/Cu3 membrane showed the lowest flux decline of 20 % and 25 % for, respectively. The TFC-l-glutamine/Cu3 membrane exhibited promising antifouling performance, with a flux recovery ratio (FRR) of 95.2 % for bovine serum albumin (BSA) foulants. The TFC-l-glutamine/Cu3 membrane exhibited a low copper leaching of ≤3 %, suggesting its high stability. The modification strategy demonstrated in this study provides a feasible solution to simultaneously address multiple issues of TFC RO membranes, which potentially leading to more efficient desalination.