Taxonomic Delimitation Research Articles

Phylogenomic insights into Neotropical Magnolia relationships

Despite extensive research into the phylogenetic relationships of the genus Magnolia, Neotropical taxa have been neglected. This is partly because their numbers have recently doubled and now account for almost half of the global richness. Therefore, by sampling one-third of all Neotropical taxa their relationships were studied using morphological, nuclear, and plastome data. Two major clades were identified: Clade I, comprising Magnolia sect. Talauma, Magnolia sect. Splendentes from the Neotropics, and the Asian Magnolia sect. Gwillimia; while Clade II included the Neotropical clades Magnolia sect. Macrophylla and Magnolia sect. Magnolia, along with the remaining non-Neotropical sections. Within Clade I, Magnolia sect. Talauma was geographically divided into a northern subclade grouping Mexican and Central American taxa, and a southern subclade comprising South American and Caribbean taxa. Magnolia sect. Splendentes was also dichotomously divided, corresponding to the former Magnolia sect. Talauma subsect. Cubenses and Magnolia sect. Talauma subsect. Dugandiodendron. In Clade II, the relationships within Magnolia sect. Macrophylla and Magnolia sect. Magnolia were unclear, suggesting a species complex in all Magnolia sect. Macrophylla taxa. In total, 25 morphological traits were assessed, and ancestral state reconstructions were carried out. Only the joined clustering of mature follicles was a synapomorphy for the southern subclade of Magnolia sect. Talauma. In conclusion, this highlights the need to re-assess the taxonomic delimitation of certain groups, to update the infrageneric classification of Neotropical clades and to explore morphological traits to support them.

Leaf micromorphology and anatomical traits of leaves as potential taxonomic markers for infrageneric classification of<em> Cinnamomum</em> (Lauraceae)

This study aimed to examine the leaf anatomy of the eight species of Cinnamomum (family Lauraceae) that occur in Sri Lanka to evaluate its potential utility in taxonomic delimitation. Leaf surface micromorphology and internal anatomy were studied using standard light and scanning electron microscopy. Infrageneric and interspecific variation in micromorphology of cuticular materials was observed in both abaxial and adaxial surfaces. Both abaxial and adaxial surfaces had undulating, thick cuticles with different patterns of wax deposition. Leaves were hypostomatic with no special arrangement for epidermal pavement cells. Simple, unicellular, unbranched, solitary and non-glandular trichomes were observed in different species on both surfaces of the leaves. Both adaxial and abaxial surfaces in C. dubium and C. capparu-coronde were densely covered with simple, unicellular/ falcate, long and thin trichomes. Transverse sections (TS) of the leaves were different in shape (symmetrical, asymmetrical, irregular, saucer). The midrib contained one open arch central vascular bundle that was different in shape (oval, elongated, irregular, ‘V’shaped, partially dissected into 2 or 3 segments) in different species. The number of collateral vessels was dissimilar between the species and varied in number (±10 - ±17). Isolated or aggregated crystals were observed in different parts of the leaf and oval-to-round schizogenous secretory cells were present in C. capparu-coronde, C. citriodorum and C. dubium. Leaf cuticular features together with the presence/absence of secretory cavities, trichome shape and density, midrib cross-section outline and shape of vascular bundles are taxonomically informative characteristics that can be used to differentiate the eight species of Cinnamomum that occur in Sri Lanka.

Linear Morphometry of Male Genitalia Distinguishes the Ant Genera Monomorium and Syllophopsis (Hymenoptera: Formicidae) in Madagascar.

Morphometric analyses of male genitalia are routinely used to distinguish genera and species in beetles, butterflies, and flies, but are rarely used in ants, where most morphometric analyses focus on the external morphology of the worker caste. In this work, we performed linear morphometric analysis of the male genitalia to distinguish Monomorium and Syllophopsis in Madagascar. For 80 specimens, we measured 10 morphometric characters, especially on the paramere, volsella, and penisvalvae. Three datasets were made from linear measurements: mean (raw data), the ratios of characters (ratio data), and the Removal of Allometric Variance (RAV data). The following quantitative methods were applied to these datasets: hierarchical clustering (Ward's method), unconstrained ordination methods including Principal Component Analysis (PCA), Non-Metric Multidimensional Scaling analyses (NMDS), Linear Discriminant Analysis (LDA), and Conditional Inference Trees (CITs). The results from statistical analysis show that the ratios proved to be the most effective approach for genus-level differentiation. However, the RAV method exhibited overlap between the genera. Meanwhile, the raw data facilitated more nuanced distinctions at the species level compared with the ratios and RAV approaches. The CITs revealed that the ratios of denticle length of the valviceps (SeL) to the paramere height (PaH) effectively distinguished between genera and identified key variables for species-level differentiation. Overall, this study shows that linear morphometric analysis of male genitalia is a useful data source for taxonomic delimitation.

Different species or altitudinal morphotypes? Testing the taxonomic value of Dianthus brachycalyx (Caryophyllaceae)

AbstractDefining species boundaries within plant groups distributed along wide elevational and geographic gradients may lead to unstable taxonomic delimitations using morphological data only. Within the taxonomically challenging genus Dianthus, through an integrative approach we tested the taxonomic value of D. brachycalyx, a putative species endemic to mountain peaks of the central‐southern Apennines, with respect to the widespread central‐Mediterranean D. virgineus. We measured 30 morphological characters in 452 individuals from 25 populations and obtained 3202 single nucleotide polymorphisms using ddRAD‐seq techniques in 394 individuals from 36 populations. For climatic niche comparison, we built a dataset of 348 occurrence points. By comparing morphometric, genetic, and climatic niche data, we showed that D. brachycalyx cannot be considered a distinct species. Morphometric separation between the two species is detectable, but high‐elevation populations of D. virgineus are similar to D. brachycalyx. Genetic analyses revealed that the genetic structure of populations of D. brachycalyx and D. virgineus is mainly shaped by isolation‐by‐distance, irrespective of their taxonomic attribution. The climatic niches of the two species are overlapping, and the niche differences are just due to different availability of climatic conditions in their ranges. Accordingly, multiple lines of evidence do not support a separation of D. brachycalyx from D. virgineus, and the former should be considered a heterotypic synonym of the latter.

Reproductive biology as a tool to elucidate taxonomic delimitation: Howdifferent can two highly specialized subspecies of Parodia haselbergii (cactaceae)be?

Reproductive isolation is one of the mechanisms of speciation. The two currently accepted subspecies of Parodia haselbergii (P. haselbergii subsp. haselbergii and P. haselbergii subsp. graessneri) were studied regarding flower traits, phenology, breeding systems and pollination. In addition, a principal component analysis with 18 floral characters and germination tests under controlled conditions were performed for both taxa. Pollination was studied in the field, in two localities of Southern Brazil. Pollinators were recorded through photos and film. Breeding system experiments were performed by applying controlled pollinations to plants excluded from pollinators. Both taxa mostly differ in asynchronous flowering periods, floral traits (including floral part measurements and nectar concentration) and pollinators. The flowers of both subspecies are functionally protogynous and perform remarkably long lifespans (≥ 15 days), both traits being novelties for Cactaceae. Whereas the reddish flowers of P. haselbergii subsp. haselbergii (nectar concentration: ca. 18%) are pollinated by hummingbirds of Thalurania glaucopis, the greenish flowers of P. haselbergii subsp. graessneri (nectar concentration: ca. 29%) are pollinated by Augochlora bees (Halictidae). Both subspecies are self-compatible, yet pollinator-dependent. The principal component analysis evidenced that both subspecies are separated, regarding flower traits. The seeds of both subspecies performed differently in the germination tests, but the best results were recovered at 20°C and germination considerably decreased around 30°C. In conclusion, all these results support that both taxa are in reproductive isolation, and can be treated as different species.

Petal epidermal micromorphology of Korean Peucedanum L. species (Apiaceae) and its systematic significance

Peucedanum L. (Apiaceae) is broadly distributed in the Old World, and 11 taxa, including five endemic species, have been reported in Korea. In this study, we used scanning electron microscopy to describe petal epidermal cell patterns and evaluated their systematic implications for all Korean Peucedanum species except for one. This included two recently reported endemic species, P. miroense and P. tongkangense, which are closely associated with Heracleum moellendorffii. The epidermal characteristics of the petals, including cell type (papillose conical, papillose knobby rugose, tabular conical, or tabular rugose), anticlinal wall shape (straight, sinuous, or curved), cuticle sculpture (striate or wrinkled), and stomata (presence or absence) were observed. The petal epidermis could be categorized into three types and two subtypes. We concluded that petal epidermal characteristics provide evidence supporting the recent robust phylogeny that suggests the non-monophyly of the genus Peucedanum. In particular, P. japonicum and P. praeruptorum, which are positioned in different clades to the other species in the recent phylogeny, had different types of petal epidermis among the studied species. These petal epidermal micro-characteristics were evaluated as possible consistent parameters for the taxonomic delimitation of species of the genus Peucedanum.

Plastid Phylogenetics, Biogeography, and Character Evolution of the Chinese Endemic Genus Sinojackia Hu

Sinojackia Hu. comprises five to eight Chinese endemic species with high ornamental and medicinal value. However, the generic limits, interspecific relationships and evolutionary history of the genus remain unresolved. In this study, we newly sequenced three plastomes of S. oblongicarpa and compared them with those of the other congeneric species to explore the taxonomic delimitation of the species and the evolutionary history of the genus. The plastome structure of Sinojackia species was extremely conserved in terms of number of genes, sequence length, and GC content. The codon usage patterns revealed that natural selection may be the main factor shaping codon usage bias. Our phylogenetic tree shows that Sinojackia is monophyletic and can be divided into two clades. Sinojackia oblongicarpa as a distinct species is supported for it is distantly related to S. sarcocarpa. The evolutionary analysis of morphological features indicates that the woody mesocarp is an ancestral feature. Sinojackia originated in central Southeast China during the early Miocene. In this period, it experienced elevated diversification and migrated from central Southeast China to the Hunan Province and the Sichuan Province with the development of the Asian monsoon and East Asian flora. Glacial–interglacial interactions with the monsoon climate may provide favorable expansion conditions for Sinojackia on a small scale.

Foliar epidermal micromorphology of genus Glochidion J.R.Forst. & G.Forst. (Phyllanthaceae) by using light and electron microscopy

The present study was conducted to compare both qualitative and quantitative characteristics of foliar epidermal micromorphology on some members of Glochidion in Assam. As taxonomic attributes, the foliar epidermal micromorphology study of nine taxa of both abaxial and adaxial surfaces was performed by using light microscopy (LM) and field emission scanning electron microscopy (FESEM). The result showed both amphistomatic and hypostomatic types of leaf surfaces. On the same surface of the leaf, multiple types of stomata were observed such as anomocytic, anisocytic, hemiparacytic, and paracytic types. Significant diversity and variations were observed in stomatal number, size, area, epidermal cell number, subsidiary cells, and trichomes. The stomatal index, stomatal shape, epidermal cell shape, length and width of the stomata, and trichomes showed variation among the studied taxa. Glands were absent in all studied members. Papillae and epicuticular wax crystals were observed in some taxa. In addition, a taxonomic key was also provided based on foliar leaf epidermal characteristics using qualitative and quantitative data from LM and FESEM. Based on quantitative data of foliar leaf micromorphology, principal component analysis (PCA) and cluster analysis were carried out to authenticate the micromorphological data. These would aid in the identification of taxa as well as in taxonomic delimitation.

Characterization of the complete chloroplast genome sequence of Agave durangensis (Asparagales: Asparagaceae: Agavoideae)

Agave durangensis commonly known as agave cenizo, is an endemic Agave species in Mexico used for mescal production, yet its taxonomic delimitation is still controversial. This study aimed to enhance taxonomic clarity by characterizing its chloroplast genome. Chloroplast DNA was isolated from 2-year-old A. durangensis leaves. The complete chloroplast genome size was 156,441 bp, comprising a large single-copy region (LSC), a pair of inverted repeat regions (IR), and a small single-copy region (SSC). Annotation revealed 87 protein-coding genes, 38 tRNAs, and 8 rRNAs, with notable gene inversions. Phylogenetic analysis suggests, A. durangensis forms a separate lineage within the Agave genus.

Taxonomic delimitation in Aspidosperma sect. Pungentia (Apocynaceae) based on morphological and leaf anatomical traits

Aspidosperma is one of the most representative genera in Apocynaceae in Brazil, composed of trees or small trees popularly known as perobas. The genus is distributed throughout tropical America, from Mexico to Argentina, with the exception of Chile. It comprises 80 species, 42 of which occur in Brazil, which is the center of diversity for the genus. Aspidosperma triternatum and Aspidosperma quebracho-blanco, name the Aspidosperma sect. Pungentia, section is easily distinguished from the others, even in the vegetative state, by grouping species that have leaves with pungent apexes, unique in the genus. However, A. triternatum and A. quebracho-blanco are difficult to distinguish due to the morphological similarities they present, such as the pungent apex of their whorled leaves and the yellowish white color of their flowers. Therefore, our objective was to develop a study to obtain leaf morphological using the usual methods of microscopy. The most important diagnostic characters useful for delimiting the species were: the number of pairs of secondary veins; the patterns of distance between these and the median and distal region, as well as the reticulation of these veins; the branching of the tertiary veins; the impression of the quaternary veins as well as their development and the shape of the areola; shape of epidermal cells; cuticular ornamentation pattern; types and distribution of trichomes; distribution of stomata; organization and number of cell layers in mesophyll. We have shown from the performed study that the species have remarkable morphological and anatomical differences which made possible a better circumscription of the group.

Actualización de la flora epífita del Perú

Despite the high diversity of vascular epiphytes (VE) reported in Peru, there is no updated checklist that is in line with the new taxonomic delimitations and the new concepts of epiphytes. In this study, we update the list of VE in Peru, based on a bibliographic search and visits to local herbaria. Species names were updated according to the World Flora Online, their presence in the EpiList was confirmed, as well as their altitudinal distribution and distribution by department, risk category, and endemism. Finally, the epiphyte coefficient was estimated. We found 2462 species, belonging to 18 orders, 25 families, and 249 genera. The families with the highest richness were Orchidaceae (1606), Bromeliaceae (201), and Piperaceae (139 spp.); 85% of the species were in the EpiList (2088 spp.). The department with the highest richness was Amazonas (709) and the lowest were Ica and Tacna (2 spp.). The altitudinal range with the highest richness is between 1501 – 2000 m (649); 689 species are endemic and 220 are in some risk category; the epiphyte quotient is 13.12. This update represents an approximate 40% increase, positioning Peru as the third country with the highest VE diversity. A more comprehensive list was obtained, in line with the concept of epiphytism, highlighting the need to include 384 species in the EpiList, which would help complement the global list of VE worldwide.

Structure of the ligule in American species of Selaginella P. Beauv. (Selaginellaceae)

The ligule is an important character in the taxonomic delimitation of Selaginella species. Here, the morphology of this organ is described in 11 American species. Four of these species are xerophytic: Selaginella convoluta, S. microphylla, S. peruviana, and S. sellowii, and seven are mesophytic: S. anceps, S. diffusa, S. flagellata, S. flexuosa, S. mollis, S. silvestris, and S. sulcata. Morphological data were obtained by traditional histological techniques. Observations were made by light and scanning electron microscopy. Variations in ligule size in vegetative leaves and sporophylls were determined using a correlation analysis with Spearman's coefficient. The ligule was found to have five body shapes: campanulate, linguiform, elliptic, fan-shaped, and rectangular. Each shape can have a lobed (bi-, tri-, or multi-lobed), rounded, or truncate apex. Size, shape, and apex are characteristic of each species and remain constant in young and mature leaves. No significant differences were observed between xerophytic and mesophytic species. The ligule of all species studied is described for the first time. Micrographs of all the species studied are presented, and the morphological results of this study have been mapped into the recent phylogeny of the genus.

Structure, diversity, and genetic delimitation of two Magnolia species endemic to eastern Mexico

Abstract In Mexico, Magnolia species of the section Macrophylla have been segregated based on phenotypic characteristics. However, the wide environmental variation throughout their distribution area in the eastern region of the country could be the main cause of the high degree of morphological variation among the taxa of this section. Therefore, it is necessary to carry out studies at the genetic level to confirm the taxonomic identity of these species. In the present study, the diversity and genetic structure of the populations of Magnolia rzedowskiana and M. zotictla were estimated using simple sequence repeat markers. We evaluated whether the taxonomic delimitation as independent species is consistent with their degree of genetic differentiation, comparing three regions of chloroplast DNA: trnH-psbA, ORF350, and rpl32-trnL. The DNA was obtained from four populations of the two species, which are distributed in the states of Hidalgo, Querétaro and San Luis Potosí. The populations presented intermediate–high genetic diversity (He = 0.52–0.60), limited gene flow (Nm = 0.62) and high genetic differentiation (Fst = 0.288), which may be related to their low density and strong geographic isolation, caused by the high degree of fragmentation of their habitat. The phylogenetic analysis and the genetic differentiation values indicate that each of the populations of the two Magnolia species analyzed behaves as an independent evolutionary unit, so the taxonomic delimitation of the three M. rzedowskiana populations must be reconsidered. The results obtained could be very useful for implementing management and conservation strategies for these populations in the short term.

Looking into 16th-century botanical history to understand the complex taxonomy of Tulipa sylvestris in Europe

Tulipa sylvestris is a small yellow tulip that was introduced to northern Europe in the 16th century. Unlike the tulips that came from the Ottoman empire and gave birth to modern cultivars, T. sylvestris came from the Mediterranean and became a garden escapee that successfully naturalized across Europe. Its taxonomy is complex due to morphological diversity, polyploidy and naturalization of cultivated plants. Two subspecies are provisionally accepted in Europe: subsp. australis, a diploid native in the Mediterranean (up to Central Asia) that grows on mountainous rocky grasslands, on poor soils; and subsp. sylvestris a tetraploid that is naturalized across Europe and grows in rich soils at low altitudes, mainly at field margins, vineyards and gardens. Sometimes these two subspecies are regarded as distinct species, but their taxonomic delimitation is unclear.

Enhancing the taxonomic delimitation of Lippia origanoides Kunth (Verbenaceae) by analyzing volatile terpenes and molecular markers in micropropagated accessions

Enhancing the taxonomic delimitation of Lippia origanoides Kunth (Verbenaceae) by analyzing volatile terpenes and molecular markers in micropropagated accessions

Sporangial arrangement patterns in Selaginella strobili of Arunachal Pradesh, a state in North East India: An insightful analysis

The study on sporangial arrangement patterns in strobili of Selaginella species from Arunachal Pradesh, India aims to provide a morphological analysis of strobili in 20 species of Selaginella. The study recorded variations in the distributional patterns of sporangia in the strobili within and among the Selaginella species. It provides a detailed description of the position and features of strobili, the number and position of microsporangia and megasporangia per strobili, the shape, size and margin of sporophylls and the number of megaspores per megasporangium which are useful in taxonomic delimitation. We provided photo plates of strobili in 20 species of the genus, 16 patterns of sporangial arrangement and a table which includes sampling details along with statistical analysis based on the size of strobili and sporophylls.

Patterns of speciation in a parapatric pair of Saturnia moths as revealed by target capture.

The focus of this study has been to understand the evolutionary relationships and taxonomy of a widely distributed parapatric species pair of wild silk moths in Europe: Saturnia pavonia and Saturnia pavoniella (Lepidoptera: Saturniidae). To address species delimitation in these parapatric taxa, target enrichment and mtDNA sequencing was employed alongside phylogenetic, admixture, introgression, and species delimitation analyses. The dataset included individuals from both species close to and farther away from the contact zone as well as two hybrids generated in the lab. Nuclear markers strongly supported both S. pavonia and S. pavoniella as two distinct species, with hybrids forming a sister group to S. pavoniella. However, the Maximum Likelihood (ML) tree generated from mtDNA sequencing data presented a different picture, showing both taxa to be phylogenetically intermixed. This inconsistency is likely attributable to mitonuclear discordance, which can arise from biological factors (e.g., introgressive hybridization and/or incomplete lineage sorting). Our analyses indicate that past introgressions have taken place, but that there is no evidence to suggest an ongoing admixture between the two species, demonstrating that the taxa have reached full postzygotic reproductive isolation and hence represent two distinct biological species. Finally, we discuss our results from an evolutionary point of view taking into consideration the past climatic oscillations that have likely shaped the present dynamics between the two species. Overall, our study demonstrates the effectiveness of the target enrichment approach in resolving shallow phylogenetic relationships under complex evolutionary circumstances and that this approach is useful in establishing robust and well-informed taxonomic delimitations involving parapatric taxa.

Genome-environment association analyses reveal geographically restricted adaptive divergence across the range of the widespread Eurasian carnivore Lynx lynx (Linnaeus, 1758).

Local adaptations to the environment are an important aspect of the diversity of a species and their discovery, description and quantification has important implications for the fields of taxonomy, evolutionary and conservation biology. In this study, we scan genomes from several populations across the distributional range of the Eurasian lynx, with the objective of finding genomic windows under positive selection which may underlie local adaptations to different environments. A total of 394 genomic windows are found to be associated to local environmental conditions, and they are enriched for genes involved in metabolism, behaviour, synaptic organization and neural development. Adaptive genetic structure, reconstructed from SNPs in candidate windows, is considerably different than the neutral genetic structure of the species. A widespread adaptively homogeneous group is recovered occupying areas of harsher snow and temperature climatic conditions in the north-western, central and eastern parts of the distribution. Adaptively divergent populations are recovered in the westernmost part of the range, especially within the Baltic population, but also predicted for different patches in the western and southern part of the range, associated with different snow and temperature regimes. Adaptive differentiation driven by climate does not correlate much with the subspecies taxonomic delimitations, suggesting that subspecific divergences are mostly driven by neutral processes of genetic drift and gene flow. Our results will aid the selection of source populations for assisted gene flow or genetic rescue programs by identifying what climatic patterns to look for as predictors of pre-adaptation of individuals. Particularly, the Carpathian population is confirmed as the best source of individuals for the genetic rescue of the endangered, isolated and genetically eroded Balkan population. Additionally, reintroductions in central and western Europe, currently based mostly on Carpathian lynxes, could consider the Baltic population as an additional source to increase adaptive variation and likely improve adaptation to their milder climate.

Geometric Morphometrics sheds light on the systematics affinities of two enigmatic dwarf Neotropical sedges (Carex, Cyperaceae).

Geometric morphometrics (GM) is a powerful analytical tool that enables complete quantification of shapes. Its use in Botany has a great potential for complementing plant evolutionary and ecological studies. Taxonomic delimitation in Carex has been complicated due to reduction of characters and frequent homoplasy. This problem is more marked in cases where the species exhibit dwarfism. South America is the continent with the least understood Carex flora. The systematic relationships of some bizarre-looking groups were not unraveled until molecular phylogenetic studies resolved their relationships. In particular, there are two species only known from their type material whose affinities remain uncertain: Carexherteri and C.hypsipedos. These two taxa are acaulescent plants that respectively grow in the Uruguayan pampa and Peruvian high-altitude meadows. Recently, both species were ascribed to the Carexphalaroides group (subgen. Psyllophorae, sect. Junciformes) due to superficial morphological similarities, such as the androgynous peduncled spikes. However, their character combination is also coincident for its circumscription to sect. Abditispicae species. Nevertheless, in the absence of confirmation from molecular analyses, their placement must be considered preliminary until additional data can be provided. In this work we employ for the first time geometric morphometrics (GM) tools to assess the systematic affinities of two taxonomically problematic sedge species based on fruit shape. We compared utricle morphology of C.herteri and C.hypsipedos with that of C.phalaroides group and species in sect. Abditispicae. To this end we used GM and traditional morphometric approaches. Utricle shape variation along with other morphological features support the exclusion of these two species from the C.phalaroides gr. and, at the same time, show clear affinities of C.herteri to sect. Abditispicae. Carexhypsipedos remains as an incertae sedis species. Our work shows the potential utility of GM for the exploration of systematic affinities in sedges and in other graminoids.

Nightmare or delight: Taxonomic circumscription meets reticulate evolution in the phylogenomic era

Phylogenetic studies in the phylogenomics era have demonstrated that reticulate evolution greatly impedes the accuracy of phylogenetic inference, and consequently can obscure taxonomic treatments. However, the systematics community lacks a broadly applicable strategy for taxonomic delimitation in groups characterized by pervasive reticulate evolution. The red-fruit genus, Stranvaesia, provides an ideal model to examine the influence of reticulation on generic circumscription, particularly where hybridization and allopolyploidy dominate the evolutionary history. In this study, we conducted phylogenomic analyses integrating data from hundreds of single-copy nuclear (SCN) genes and plastomes, and interrogated nuclear paralogs to clarify the inter/intra-generic relationship of Stranvaesia and its allies in the framework of Maleae. Analyses of phylogenomic discord and phylogenetic networks showed that allopolyploidization and introgression promoted the origin and diversification of the Stranvaesia clade, a conclusion further bolstered by cytonuclear and gene tree discordance. With a well-inferred phylogenetic backbone, we propose an updated generic delimitation of Stranvaesia and introduce a new genus, Weniomeles. This new genus is distinguished by its purple-black fruits, thorns trunk and/or branches, and a distinctive fruit core anatomy characterized by multilocular separated by a layer of sclereids and a cluster of sclereids at the top of the locules. Through this study, we highlight a broadly-applicable workflow that underscores the significance of reticulate evolution analyses in shaping taxonomic revisions from phylogenomic data.