Symmetric Image Registration Research Articles

SymReg-GAN: Symmetric Image Registration With Generative Adversarial Networks.

Symmetric image registration estimates bi-directional spatial transformations between images while enforcing an inverse-consistency. Its capability of eliminating bias introduced inevitably by generic single-directional image registration allows more precise analysis in different interdisciplinary applications of image registration, e.g., computational anatomy and shape analysis. However, most existing symmetric registration techniques especially for multimodal images are limited by low speed from the commonly-used iterative optimization, hardship in exploring inter-modality relations or high labor cost for labeling data. We propose SymReg-GAN to shatter these limits, which is a novel generative adversarial networks (GAN) based approach to symmetric image registration. We formulate symmetric registration of unimodal/multimodal images as a conditional GAN and train it with a semi-supervised strategy. The registration symmetry is realized by introducing a loss for encouraging that the cycle composed of the geometric transformation from one image to another and its reverse should bring an image back. The semi-supervised learning enables both the precious labeled data and large amounts of unlabeled data to be fully exploited. Experimental results from six public brain magnetic resonance imaging (MRI) datasets and 1 our own computed tomography (CT) and MRI dataset demonstrate the superiority of SymReg-GAN to several existing state-of-the-art methods.

Fast and Robust Symmetric Image Registration Based on Distances Combining Intensity and Spatial Information.

Intensity-based image registration approaches rely on similarity measures to guide the search for geometric correspondences with high affinity between images. The properties of the used measure are vital for the robustness and accuracy of the registration. In this study a symmetric, intensity interpolationfree, affine registration framework based on a combination of intensity and spatial information is proposed. The excellent performance of the framework is demonstrated on a combination of synthetic tests, recovering known transformations in the presence of noise, and real applications in biomedical and medical image registration, for both 2D and 3D images. The method exhibits greater robustness and higher accuracy than similarity measures in common use, when inserted into a standard gradientbased registration framework available as part of the open source Insight Segmentation and Registration Toolkit (ITK). The method is also empirically shown to have a low computational cost, making it practical for real applications. Source code is available.

S‐HAMMER: Hierarchical attribute‐guided, symmetric diffeomorphic registration for MR brain images

Deformable registration has been widely used in neuroscience studies for spatial normalization of brain images onto the standard space. Because of possible large anatomical differences across different individual brains, registration performance could be limited when trying to estimate a single directed deformation pathway, i.e., either from template to subject or from subject to template. Symmetric image registration, however, offers an effective way to simultaneously deform template and subject images toward each other until they meet at the middle point. Although some intensity-based registration algorithms have nicely incorporated this concept of symmetric deformation, the pointwise intensity matching between two images may not necessarily imply the matching of correct anatomical correspondences. Based on HAMMER registration algorithm (Shen and Davatzikos, [2002]: IEEE Trans Med Imaging 21:1421-1439), we integrate the strategies of hierarchical attribute matching and symmetric diffeomorphic deformation to build a new symmetric-diffeomorphic HAMMER registration algorithm, called as S-HAMMER. The performance of S-HAMMER has been extensively compared with 14 state-of-the-art nonrigid registration algorithms evaluated in (Klein et al., [2009]: NeuroImage 46:786-802) by using real brain images in LPBA40, IBSR18, CUMC12, and MGH10 datasets. In addition, the registration performance of S-HAMMER, by comparison with other methods, is also demonstrated on both elderly MR brain images (>70 years old) and the simulated brain images with ground-truth deformation fields. In all experiments, our proposed method achieves the best registration performance over all other registration methods, indicating the high applicability of our method in future neuroscience and clinical applications.

Consistent multi-time-point brain atrophy estimation from the boundary shift integral

Brain atrophy measurement is increasingly important in studies of neurodegenerative diseases such as Alzheimer's disease (AD), with particular relevance to trials of potential disease-modifying drugs. Automated registration-based methods such as the boundary shift integral (BSI) have been developed to provide more precise measures of change from a pair of serial MR scans. However, when a method treats one image of the pair (typically the baseline) as the reference to which the other is compared, this systematic asymmetry risks introducing bias into the measurement. Recent concern about potential biases in longitudinal studies has led to several suggestions to use symmetric image registration, though some of these methods are limited to two time-points per subject. Therapeutic trials and natural history studies increasingly involve several serial scans, it would therefore be useful to have a method that can consistently estimate brain atrophy over multiple time-points. Here, we use the log-Euclidean concept of a within-subject average to develop affine registration and differential bias correction methods suitable for any number of time-points, yielding a longitudinally consistent multi-time-point BSI technique. Baseline, 12-month and 24-month MR scans of healthy controls, subjects with mild cognitive impairment and AD patients from the Alzheimer's Disease Neuroimaging Initiative are used for testing the bias in processing scans with different amounts of atrophy. Four tests are used to assess bias in brain volume loss from BSI: (a) inverse consistency with respect to ordering of pairs of scans 12 months apart; (b) transitivity consistency over three time-points; (c) randomly ordered back-to-back scans, expected to show no consistent change over subjects; and (d) linear regression of the atrophy rates calculated from the baseline and 12-month scans and the baseline and 24-month scans, where any additive bias should be indicated by a non-zero intercept. Results indicate that the traditional BSI processing pipeline does not exhibit significant bias due to its use of windowed sinc interpolation, but with linear interpolation and asymmetric registration, bias can be pronounced. Either improved interpolation or symmetric registration alone can greatly reduce this bias, and our proposed method combining both aspects shows no significant bias in any of the four experiments.

Symmetric image registration

This paper presents an original non-rigid image registration approach, which tends to improve the registration by establishing a symmetric image interdependence. In order to gather more information about the image transformation it measures the image similarity in both registration directions. The presented solution is based on the interaction between the images involved in the registration process. Images interact through forces, which according to Newton’s action–reaction law form a symmetric relationship. These forces may transform both of the images, although in our implementation one of the images remains fixed. The experiments performed to demonstrate the advantages of the symmetric registration approach involve the registration of simple objects, the recovery of synthetic deformation, and the inter-patient registration of real images of the head. The results show that the symmetric approach improves both the registration consistency and the registration correctness.