Symbiotic Characteristics Research Articles

Utilizing Flaxseed as an Antimicrobial Alternative in Chickens: Integrative Review for Salmonella enterica and Eimeria

This review provides an integrative framework for understanding flaxseed (Linum utassitissimum) as an antimicrobial alternative for poultry production. We begin by familiarizing the reader with the global legislation of antibiotics in animal husbandry; highlighting gaps and current issues for Salmonella enterica (S. enterica) and Eimeria (coccidiosis-inducing). We then discuss the natural, symbiotic characteristics of the Galliformes order (chicken-like birds) and Linum (the flaxes). The key immunological themes in this review include: (i) flaxseed’s regulation of innate and adaptive immunity in chickens, (ii) flaxseed’s ability to accelerate chicken recovery from infection with S. enterica and Eimeria, and (iii) flaxseed’s strengthening of immunity via vitamin B6 antagonism. Research indicates that whole flaxseed increases adaptive immune capacity by augmenting cecal Bacteroides and short-chain fatty acids while also attenuating the heterophil to lymphocyte ratio in chickens. Moreover, flaxseed accelerates chicken recovery from infection with Salmonella Enteritidis or Eimeria tenella; however, future work is needed to better understand (i) defatted flaxseed’s superior performance against Eimeria species and (ii) Eimeria maxima’s resilience against whole flaxseed. In the context of vitamin B6 antagonism, we propose that 15% whole flaxseed overcomes S. enterica’s insult to estrogen synthesis by sustaining the activity of phosphatidylethanolamine methyltransferase (PEMT) in liver. We also propose that 10% defatted flaxseed (as a metformin homologue) strengthens chicken immunity by safeguarding gonadal physiology and by increasing plasma thymidine bioavailability. The concepts in this review can be used as a template for conducting advanced immunological studies in poultry science.

Residues of Symbiont Cover Crops Improving Corn Growth and Soil-Dependent Health Parameters

Cover crops have emerged as a crucial tool in promoting sustainable agricultural practices, particularly in improving soil quality and soil–plant health. This study investigates the impact of single cover crop plants each with varying fungal and/or bacterial symbiosis capacities in a pot experiment. The growth of non-symbiont Ethiopian mustard (Brassica carinata), the associative bacterium symbiont black oat (Avena strigosa) and the double (fungus–bacterium) endosymbiont broad bean (Vicia faba) was studied on three distinct soil types, namely a less-fertile sandy soil (Arenosol), an average value of loam soil (Luvisol) and a more productive chernozem soil (Chernozem). Beside the biomass production, nitrogen content and frequency of AM fungi symbiosis (MYCO%) of cover crops, the main soil health characteristics of electrical conductivity (EC), labile carbon (POXC) and fluorescein diacetate enzyme activity (FDA) were assessed and evaluated by detailed statistical analysis. Among the used soil types, the greatest biomass production was found on Chernozem soil with the relatively highest soil organic matter (2.81%) content and productivity. Double symbiotic activity, assessed by soil nitrogen content and mycorrhiza frequency (MYCO%), were significantly improved on the lowest-quality Arenosols (SOM 1.16%). In that slightly humous sandy soil, MYCO% was enhanced by 45%, indicating that symbiosis was crucial for plant growth in the less-fertile soil investigated. After the initial cover crop phase, the accumulated biomass was incorporated into the Luvisol (SOM 1.64%) soil, followed by the cultivation of corn (Zea mays, DK 3972) as the main crop. The results indicate that incorporating cover crop residues enhanced labile carbon (POXC) by 20% and significantly increased the FDA microbial activity in the soil, which positively correlated with the nutrient availability and growth of the maize crop. This study emphasizes the importance of selecting suitable cover crops based on their symbiotic characteristics to improve soil quality and enhance soil–plant health in sustainable agricultural systems.

Species-dependent effect of rhizobacteria co-inoculation in legume plants: A global meta-analysis

The microorganisms living in the rhizosphere significantly impact the growth and development of the plants they associate with. For instance, leguminous plants form relationships with both rhizobia and other rhizobacteria, and these partnerships can be influenced by the presence of a third microorganism. Given this context, this meta-analysis aims to assess the effect of co-inoculation of rhizobia and plant growth-promoting rhizobacteria on legumes of agricultural interest under different cultivation conditions. We collected quantitative data from 123 articles and 32 countries, encompassing various regions of the world, where the impact of rhizobia-rhizobacteria co-inoculation on the productivity and symbiotic characteristics of legume crops was evaluated. The moderating variables included the experimental conditions, legume species, rhizobia and rhizobacteria genera, the presence or absence of stress, and the soil's chemical attributes. The field and greenhouse data demonstrate that co-inoculation enhanced the attributes of all the included legume plants. Co-inoculation of legume crops with both rhizobia and plant growth-promoting rhizobacteria increased the yields of the common bean (+34%), chickpea (+19%), and soybean (+2%). The most effective genera in increasing grain yield were Pseudomonas and Bacillus, followed by Azospirillum. Co-inoculation improved plant attributes under all stress conditions, with the best response observed in saline environments (mean increase of 37%). Co-inoculation proved beneficial regardless of the chemical composition of the soil, with a higher yield response observed at pH > 7 and soil organic carbon ≤1%. In summary, this study demonstrates that co-inoculation is superior to single inoculation with rhizobia, resulting in improved productivity of legume plants across various agronomic and environmental conditions.

The elite strain INPA03-11B approved as a cowpea inoculant in Brazil represents a new Bradyrhizobium species and it has high adaptability to stressful soil conditions.

The strain INPA03-11BT, isolated in the 1980s from nodules of Centrosema sp. collected in Manaus, Amazonas, Brazil, was approved by the Brazilian Ministry of Agriculture as a cowpea inoculant in 2004. Since then, several studies have been conducted regarding its phenotypic, genetic, and symbiotic characteristics under axenic and field conditions. Phenotypic features demonstrate its high adaptability to stressful soil conditions, such as tolerance to acidity, high temperatures, and 13 antibiotics, and, especially, its high symbiotic efficiency with cowpea and soybean, proven in the field. The nodC and nifH phylogenies placed the INPA strain in the same clade as the species B. macuxiense BR 10303T which was also isolated from the Amazon region. The sequencing of the 16S rRNA ribosomal gene and housekeeping genes, as well as BOX-PCR profiles, showed its potential as a new species, which was confirmed by a similarity percentage of 94.7% and 92.6% in Average Nucleotide Identity with the closest phylogenetically related species Bradyrhizobium tropiciagri CNPSo1112T and B. viridifuturi SEMIA690T, respectively. dDDH values between INPA03-11BT and both CNPSo 1112T and SEMIA690T were respectively 58.5% and 48.1%, which are much lower than the limit for species boundary (70%). Therefore, we propose the name Bradyrhizobium amazonense for INPA03-11BT (= BR3301 = SEMIA6463).

Fern species and seasonal variation alter arbuscular mycorrhizal fungal colonization and co-occurrence patterns in the Heishiding Natural Reserve, South China

The establishment of arbuscular mycorrhizal fungi (AMF) symbiosis is generally considered an important pathway that assists ferns in their adaption to a variable environment in the forest ecosystem. However, how both fern species and seasonal variation affect the symbiotic characteristics and AMF community structure remains largely unknown. In this study, the AMF colonization status of 19 fern species in the Heishiding Nature Reserve located in south China was assessed. The effects of seasons on AMF colonization and community structure were also determined. The results showed that both seasons and species significantly affected AMF colonization rate (1.88–56.03 %) and spore density (94–546/25 g dry soil). In addition, according to principal component analysis, in spring, AMF colonization and spore density differed considerably from other seasons. The total AMF sequences detected in spring were significantly higher than in winter (p < 0.05). Glomus was the dominant genus, accounting for >75 % of all sequences. The AMF Chao1 and Faith PD indexes of Blechnum orientale Linn as well as the Shannon and Simpson indexes of Selaginella doederleinii Hieron were significantly higher in spring than in winter (p < 0.05). According to partial least squares path modeling, season had a significant influence on AMF colonization by varying the AMF alpha diversity rather than their community composition. Notably, network analysis showed that seasonal variation induced differences in AMF network structure, keystone taxa, and the number of links between species. This study highlights the symbiotic relationship between ferns and AMF in different seasons. The results provide novel insights on terrestrial ecosystem management and fern conservation from the perspective of plant-AM symbiosis.

Social Workers’ Perceptions of the Effect of Interpersonal Factors on Older Adults’ Decision to Remain in Abusive Relationships

Abstract Older adults who are abused by their offspring often find it difficult to cooperate with professionals to end the abuse. In these situations, social workers face an ethical dilemma between respecting the older adult’s right to autonomy and intervening in a paternalistic way to prevent harm. This qualitative study aimed to examine the effect of interpersonal factors on the decision-making ability of older adults who do not experience significant cognitive and mental decline and choose to remain in abusive relationships. Twenty-one social workers specialising in the field of aging participated in a semi-structured interview based on a vignette. The analysis was encoded inductively, informed by the principles of content analysis. Two themes emerged: (i) Older adults’ feelings towards their abusive adult children, including love and concern, shame and guilt and relationships with symbiotic characteristics; (ii) Older adults’ motivation to stay in the abusive relationships, based either on utilitarian motivation or on their fear of the abuser. The study’s findings can serve as a foundation for the development of a tool for evaluating the influence of abusive relationships on older adults’ decision-making ability, which considers not only their personal characteristics but also their interactions and relationships with their surroundings.

Effect of Herbicidal Weed Management on Productivity and Profitability of Summer Cowpea

Background: The presence of weeds in cowpea reduced the yield to the tune of 60-82% depending on the weed flora and density. The critical period of weed competition in cowpea was 20-25 DAS. Therefore it is essential to control weeds effectively to harness the maximum yield potential of the crop. To manage weeds in cowpea it is also important to determine the efficacy of pre and post-emergence herbicides. Sequential application of herbicides in a short duration crop not only increases the cost of production but also create cumbersome in its application. Therefore ready mix herbicides are now becoming popular among farming community. These new ready mix herbicides need to be tested for its bio-efficacy to manage weeds and its effect on crop productivity and symbiotic characters of cowpea. Therefore, a field experiment was carried out to evaluate the impact of herbicides on the productivity and profitability of summer cowpea (Vigna unguiculata L.) at Agronomy Main Research Farm, Odisha University of Agriculture and Technology, Bhubaneswar, Odisha (India) during summer season. Methods: The experiment was laid out at Agronomy Main Research Farm, Odisha University of Agriculture and Technology, Bhubaneswar, Odisha (India) during the summer season of 2021 and2022 in a randomized block design (RBD) comprised of eight treatment with three replications. Standard procedures were followed for the observations and statistical analysis of the data. Result: The experimental results revealed that ready mix of pendimethalin+imazethapyr-750 g/ha significantly control the mixed flora of weeds which resulted significant increase in growth and yield. Ready mix application of pendimethalin + imazethapyr 750 g/ha registered the highest benefit to cost ratio.

Diversity, Genomics and Symbiotic Characteristics of Sinorhizobia That Nodulate Desmanthus spp. in Northwest Argentina.

Desmanthus spp. are legumes with the ability to associate with diverse α-proteobacteria-a microsymbiont-in order to establish nitrogen-fixing root nodules. A previous investigation from our laboratory revealed that the main bacteria associated with Desmanthus paspalaceus in symbiosis in central Argentina (Province of Santa Fe) were quite diverse and belonged to the genera Rhizobium and Mesorhizobium. To achieve a more extensive view of the local microsymbionts associated with Desmanthus spp., we sampled three different sites in Jujuy and Salta, in northwest Argentina. Matrix-assisted Laser-Desorption-Ionization Time-of-Flight mass spectrometry (MALDI-TOF) typing, 16S-rDNA analysis, and genome sequencing demonstrated that the dominant root-nodule microsymbionts belonged to the genus Sinorhizobium, with some sequenced genomes related to Sinorhizobium mexicanum, Sinorhizobium chiapanecum, and Sinorhizobium psoraleae. An analysis of nodA and nodC markers indicated that, in some of the isolates, horizontal gene transfer appeared to be responsible for the lack of congruence between the phylogenies of the chromosome and of the symbiotic region. These results revealed diverse evolutionary strategies for reaching the current Desmanthus-microsymbiont diversity. What is remarkable beside their observed genetic diversity is that the tolerance profiles of these isolates to abiotic stresses (temperature, salt concentration, pH) were quite coincident with the separation of the sinorhizobia according to place of origin, suggesting possible ecoedaphic adaptations. This observation, together with the higher aerial dry-weight matter that some isolates generated in Desmanthus virgatus cv. Marc when compared to the biomass generated by the commercial strain Sinorhizobium terangae CB3126, distinguish the collected sinorhizobia as constituting valuable germplasm for evaluation in local fields to select for more efficient symbiotic pairs.

Ensifer canadensis sp. nov. strain T173T isolated from Melilotus albus (sweet clover) in Canada possesses recombinant plasmid pT173b harbouring symbiosis and type IV secretion system genes apparently acquired from Ensifer medicae.

A bacterial strain, designated T173T, was previously isolated from a root-nodule of a Melilotus albus plant growing in Canada and identified as a novel Ensifer lineage that shared a clade with the non-symbiotic species, Ensifer adhaerens. Strain T173T was also previously found to harbour a symbiosis plasmid and to elicit root-nodules on Medicago and Melilotus species but not fix nitrogen. Here we present data for the genomic and taxonomic description of strain T173T. Phylogenetic analyses including the analysis of whole genome sequences and multiple locus sequence analysis (MLSA) of 53 concatenated ribosome protein subunit (rps) gene sequences confirmed placement of strain T173T in a highly supported lineage distinct from named Ensifer species with E. morelensis Lc04T as the closest relative. The highest digital DNA-DNA hybridization (dDDH) and average nucleotide identity (ANI) values of genome sequences of strain T173T compared with closest relatives (35.7 and 87.9%, respectively) are well below the respective threshold values of 70% and 95-96% for bacterial species circumscription. The genome of strain T173T has a size of 8,094,229 bp with a DNA G + C content of 61.0 mol%. Six replicons were detected: a chromosome (4,051,102 bp) and five plasmids harbouring plasmid replication and segregation (repABC) genes. These plasmids were also found to possess five apparent conjugation systems based on analysis of TraA (relaxase), TrbE/VirB4 (part of the Type IV secretion system (T4SS)) and TraG/VirD4 (coupling protein). Ribosomal RNA operons encoding 16S, 23S, and 5S rRNAs that are usually restricted to bacterial chromosomes were detected on plasmids pT173d and pT173e (946,878 and 1,913,930 bp, respectively) as well as on the chromosome of strain T173T. Moreover, plasmid pT173b (204,278 bp) was found to harbour T4SS and symbiosis genes, including nodulation (nod, noe, nol) and nitrogen fixation (nif, fix) genes that were apparently acquired from E. medicae by horizontal transfer. Data for morphological, physiological and symbiotic characteristics complement the sequence-based characterization of strain T173T. The data presented support the description of a new species for which the name Ensifer canadensis sp. nov. is proposed with strain T173T (= LMG 32374T = HAMBI 3766T) as the species type strain.

Genetic diversity, symbiotic efficiency, stress tolerance, and plant growth promotion traits of rhizobia nodulating Vachellia tortilis subsp. raddiana growing in dryland soils in southern Morocco

In the present study, we analyzed the genetic diversity, phylogenetic relationships, stress tolerance, phytobeneficial traits, and symbiotic characteristics of rhizobial strains isolated from root nodules of Vachellia tortilis subsp. raddiana grown in soils collected in the extreme Southwest of the Anti-Atlas Mountains in Morocco. Subsequent to Rep-PCR fingerprinting, 16S rDNA gene sequencing of 15 representative strains showed that all of them belong to the genus Ensifer. Phylogenetic analysis and concatenation of the housekeeping genes gyrB, rpoB, recA, and dnaK revealed that the entire collection (except strain LMR678) shared 99.08 % to 99.92% similarity with Ensifer sp. USDA 257 and 96.92% to 98.79% with Sinorhizobium BJ1. Phylogenetic analysis of nodC and nodA sequences showed that all strains but one (LMR678) formed a phylogenetic group with the type strain “E. aridi” LMR001T (similarity over 98%). Moreover, it was relevant that most strains belong to the symbiovar vachelliae. In vitro tests revealed that five strains produced IAA, four solubilized inorganic phosphate, and one produced siderophores. All strains showed tolerance to NaCl concentrations ranging from 2 to 12% and grew at up to 10% of PEG6000. A greenhouse plant inoculation test conducted during five months demonstrated that most rhizobial strains were infective and efficient. Strains LMR688, LMR692, and LMR687 exhibited high relative symbiotic efficiency values (respectively 231.6 %, 171.96 %, and 140.84 %). These strains could be considered as the most suitable candidates for inoculation of V. t. subsp. raddiana, to be used as a pioneer plant for restoring arid soils threatened with desertification.

Different species of Bradyrhizobium from symbiovars genistearum and retamae nodulate the endemic Retama dasycarpa in the High Atlas Mountains.

Retama dasycarpa is an endemic Retama species native to the cold semi-arid bioclimates of the High Atlas Mountains in Morocco. In this work, we analyzed the diversity of the microsymbionts nodulating this plant and their different phenotypic and symbiotic characteristics. Phylogenetic analysis of the 16S rRNA gene revealed that the tested isolates clustered in the Bradyrhizobium genus. Multilocus sequence analyses of four housekeeping genes (recA, gyrB, glnII and atpD) for 12 selected strains grouped them into four clusters close to B. lupini USDA 3051T, B. frederickii CNPSo 3446T, B. valentinum LmjM3T and B. retamae Ro19T. The individual phylogenies of these core genes and the symbiotic genes nodC, nodA and nifH were congruent. These isolates showed a broad host range, being able to nodulate different legume hosts, such as R. sphaerocarpa, R. monosperma, Lupinus luteus, Cytisus grandiflorus andChamaecytisus albidus, but not Phaseolus vulgaris or Glycine max. They all had a similar metabolic capacity, using the majority of the carbohydrates and amino acids tested as sole sources of carbon and nitrogen. Furthermore, out of the 12 selected strains, some displayed plant growth-promoting features, with six of them solubilizing phosphate and three of them producing siderophores. The present work provides, for the first time, a detailed description about the microsymbionts associated with the endemic legume R. dasycarpa.

Symbiotic Combination and Accumulation of Coal Measure Gas in the Daning–Jixian Block, Eastern Margin of Ordos Basin, China

Coal measure gas resources, including coalbed methane (CBM), shale gas, and tight gas are abundant in the Daning–Jixian Block. The complexity of the source–reservoir–cap relationship in the coal measure strata leads to unclear symbiotic characteristics and gas accumulation, which in turn, restrict the exploration and exploitation of the coal measure gas. In this study, the enrichment and accumulation of coal measure gas are discussed and summarized in detail. The results show that there are eight lithofacies and six reservoir combinations in the superposed strata of the coal measures in the study area. Controlled by the tidal flat-lagoon facies, the “sand-mud-coal” type mainly distributes in P1s2 and P1t, showing a good gas indication. Based on the variation of the total hydrocarbon content, key strata, and pressure coefficient of the coal measure gas reservoir, four superposed gas-bearing systems are identified in the vertical direction. According to the relationship between the gas-bearing system and gas reservoir, the enrichment of coal measure gas in the study area can be divided into three modes, including an intra-source enrichment mode, a near-source migration enrichment mode, and a far-source migration enrichment mode. The symbiotic accumulation of a coal measure gas model is further proposed, that is, an “Adjacent to co-source reservoir” type superimposed coalbed methane and shale gas reservoir model, a “Three gas symbiosis” superimposed reservoir model in the local gas-bearing system, and a “Co-source far reservoir” tight sandstone gas reservoir model. Clarifying the symbiotic relationship of coal measure gas reservoirs is beneficial to the exploration and further production of unconventional gas in the study area.

Strains of Bradyrhizobium barranii sp. nov. associated with legumes native to Canada are symbionts of soybeans and belong to different subspecies (subsp. barranii subsp. nov. and subsp. apii subsp. nov.) and symbiovars (sv. glycinearum and sv. septentrionale).

Four bacterial strains isolated from root nodules of soybean plants that had been inoculated with root-zone soils of legumes native to Canada were previously identified as a novel Bradyrhizobium lineage consisting of symbiovars (sv.) glycinearum and septentrionale. Our purpose was to verify the taxonomic status of these strains using phylogenetic, genomic and phenotypic analyses. Multiple phylogenetic analyses including analysis of 51 full-length ribosome protein subunit (rps) gene sequences confirmed placement of the novel strains in a highly supported lineage distinct from named Bradyrhizobium species with B. japonicum USDA 6T as the closest relative. The results of genomic and phylogenomic analyses based on digital DNA–DNA hybridization and genome blast distance phylogeny showed that novel strains in comparisons with type strains of closest relatives were below the established threshold (70 %) for species delineation. Moreover, the novel strains were divided into two subspecies clusters based on the established threshold of 79 %. The genomes of strains 144S4T, 323S2, 1S5 and 38S5T have sizes of 11 399 526, 11 474 152, 10580853 and 10 530 141 bp with DNA G+C contents of 63.1, 63.0, 63.4 and 63.3 mol%, respectively. These strains possess symbiosis islands harbouring key nodulation, nitrogen-fixation and type III secretion system genes as well as abundant insertion sequences and between two and four putative plasmids. Strains 144S4T and 323S2 (sv. glycinearum) are effective with regard to nitrogen fixation in symbiotic association with soybeans whereas strains 1S5 and 38S5T (sv. septentrionale) are ineffective. Data for morphological, physiological and symbiotic characteristics complement the sequence-based results. The data presented here support the description of a new species and two new subspecies for which the names Bradyrhizobium barranii sp. nov. subsp. barranii subsp. nov. (sv. glycinearum) and Bradyrhizobium barranii sp. nov. subsp. apii subsp. nov. (sv. septentrionale) are proposed with strain 144S4T (=LMG 31552T=HAMBI 3722T) as the species type strain and type strain of subsp. barranii subsp. nov., and strain 38S5T (=LMG 31556T=HAMBI 3721T) as the type strain of subsp. apii subsp. nov.

Classification and attribute analysis of water-storing structures in water deficient bedrock mountainous areas

Since 2002, the China Geological Survey has successively organized and implemented hydrogeological survey and groundwater exploration in water deficient areas, such as severe water shortage areas in west China, Wumeng Mountain area, Yimeng mountain area and red bed area in southern Jiangxi, obtained a large number of exploration data conducive to promoting discipline development, and summarized the law of water abundance. In recent decades, water prospecting and well drilling in bedrock mountainous areas serving poverty alleviation have not been systematically summarized based on water storage structures and their attributes. This paper takes the water storage structure as the theoretical guidance, considers geomorphic catchment, lithological water accumulation, structural water control and other control factors, and takes structure as the main control factor. The factors such as topography, formation lithology, vegetation development and actual value of development and utilization are systematically summarized and 8 types of 20 type 35 type water storage structures are divided, such as the horizontal rock stratum, monocline formation, fold, fault, contact zone, weathered crust, composite and cave reservoir. The common characteristics of different scales and types of water storage structures are analyzed and summarized with reference to and in combination with the neotectonic water control theory and groundwater system theory. From the aspects of spatial combination characteristics of water storage structure, boundary hydrogeological properties, hydrodynamic conditions, scale effect, symbiotic characteristics of water control and practical value of development and utilization, this paper puts forward the correlation between the lithology and geological structure, the relativity of permeability and water separation, the balance between catchment and water storage, the unity of scale and system, the inheritance of formation and transformation and the matching of scale and purpose. The research results refine and improve the classification of groundwater storage structure types in bedrock mountain areas with water shortage, summarize the attribute characteristics of water storage structure, deepen the understanding of the concept and connotation of water storage structure, not only further promote the research of hydrogeology in bedrock mountain areas, but also provide references for water prospecting and well locating in water shortage areas, and guide the sustainable utilization of water resources in water shortage areas.

Rhizobia and endophytic bacteria isolated from rainforest fragments within an iron ore mining site of the Eastern Brazilian Amazon.

The aim of the present study was to isolate and evaluate the diversity of rhizobial and endophytic bacterial strains from undisturbed native rainforests within an iron ore mining site of the Serra Norte de Carajás in the Eastern Brazilian Amazon region to assess their biotechnological utility in reclamation of areas. Experiments were conducted to capture strains from samples of the soil of these forests at the sites Arenito II, Noroeste II, and Sul IV using Macroptilium atropurpureum and Mimosa acutistipula var. ferrea as trap host plants. Only M. atropurpureum nodulated, and the different bacterial strains were isolated from its nodules. There was no difference in the number of nodules among the areas, but the Arenito II bacterial community was the most efficient, indicated by the aboveground biomass production and suitable shoot mass/root mass ratio. Fifty-two (52) bacterial isolates were obtained, distributed in five groups, including nodulating and endophytic bacteria: 32 from Arenito II, 12 from Noroeste II, and 8 from Sul IV. The nodulating Bradyrhizobium genus was common to the three areas, whereas Paraburkholderia was found only in Arenito II. The nodD1 gene was amplified in all the strains of both nodulating genera. Strains of the nodulating genus Methylobacterium were also isolated from the three areas; however, they did not nodulate the host of origin, and their nodD1 gene was not amplified. Endophytic strains were also isolated from the genera Paenibacillus, Pantoea, and Leifsonia in Arenito II, Leifsonia in Noroeste I, and Paenibacillus in Sul IV. The greater nodulation and rhizobial and endophytic bacterial diversity observed in Arenito II were probably due to the more suitable edaphic properties of the area. The isolated strains were incorporated in the collection of the Department of Soil Science of UFLA and will be investigated in relation to their symbiotic characteristics with native host plants, as well as their ability to perform other biological processes.

Bradyrhizobium septentrionale sp. nov. (sv. septentrionale) and Bradyrhizobium quebecense sp. nov. (sv. septentrionale) associated with legumes native to Canada possess rearranged symbiosis genes and numerous insertion sequences.

Six bacterial strains isolated from root nodules of soybean plants that had been inoculated with root-zone soil of legumes native to Canada were previously characterized and 1) placed in two novel lineages within the genus Bradyrhizobium and 2) assigned to symbiovar septentrionale. Here we verified the taxonomic status of these strains using genomic and phenotypic analyses. Phylogenetic analyses of five protein encoding partial gene sequences as well as 52 full length ribosome protein subunit gene sequences confirmed placement of the novel strains in two highly supported lineages distinct from named Bradyrhizobium species. The highest average nucleotide identity values of strains representing these two lineages relative to type strains of closest relatives were 90.7 and 92.3% which is well below the threshold value for bacterial species circumscription. The genomes of representative strains 1S1T, 162S2 and 66S1MBT have sizes of 10598256, 10733150 and 9032145 bp with DNA G+C contents of 63.5, 63.4 and 63.8 mol%, respectively. These strains possess between one and three plasmids based on copy number of plasmid replication and segregation (repABC) genes. Novel strains also possess numerous insertion sequences, and, relative to reference strain Bradyrhizobium diazoefficiens USDA110T, exhibit inversion and fragmentation of nodulation (nod) and nitrogen-fixation (nif) gene clusters. Phylogenetic analyses of nodC and nifH gene sequences confirmed placement of novel strains in a distinct lineage corresponding to symbiovar septentrionale. Data for morphological, physiological and symbiotic characteristics complement the sequence-based results. The data presented here support the description of two new species for which the names Bradyrhizobium septentrionale sp. nov. (sv. septentrionale) and Bradyrhizobium quebecense sp. nov. (sv. septentrionale) are proposed, with 1S1T (=LMG 29930T=HAMBI 3676T) and 66S1MBT (=LMG 31547T=HAMBI 3720T) as type strains, respectively.

Ilizarov technology and chinese philosophy (To commemorate the 100th anniversary of the birth of Professor Ilizarov)

The Ilizarov technology was honored as a "milestone" in the history of orthopedics in the 20th century, benefiting tens of thousands of patients around the world, including Chinese patients. The paper presents an analysis of the integration of the method into Chinese medicine, taking into account national traditions, culture and clinical thinking. Ilizarov technology has revolutionized the orthopaedic surgery and clinical limb regeneration medicine in China. Ilizarov's methodology arose suddenly and brought about revolutionary changes in terms of theoretical guidance, methods of thinking, tools used and medical procedures. For the first time, Ilizarov's discovery made people realize that the human body, natural selection in biology and joint symbiotic evolutionary characteristics are common, namely, as long as the levers activate the tissue regeneration switch and changes in regulation, any tissue at any age and to any degree can complete the self-healing process in according to the requirements of doctors and the expectations of patients, similar to the growth of children. The process of working with an external Ilizarov fixator is like playing chess and changing a kaleidoscope, and the countless number of free combinations of stress configurations can be changed in accordance with the needs of the treatment. In China, Qin Xihe integrated the Chinese culture into the Ilizarov technology, thus forming the Chinese Ilizarov technology. He proposed new concepts such as the concept of natural reconstruction, evolutionary orthopedics, interpretation of body language, one walk, two lines, the principle of three balances, happy orthopedics, etc., which were introduced into clinical practice in the field of limb deformity correction and functional reconstruction. As of December 31, 2018, 35,075 cases of various deformities and disorders of the limbs were entered into the Qinsihe orthopedic database, of which 8113 cases were treated with external fixation (Ilizarov technology). The statistics of a large number of cases showed striking results: diseases treated with this technique covered almost all sections of orthopedic pathology and more than 10 sections of non-orthopedic and traumatological pathology, including vascular, nervous, genetic, metabolic, and skin diseases. In addition to orthopedic, there are more than 170 diseases in total. When Ilizarov's technology is applied, it can magically transform the old into the young. Therefore it is known as a "lifeboat". Conclusion Over the past 70 years, Ilizarov's ideas and technologies have been preserved, updated and augmented. Ilizarov's technology serves as an evolutionary phenomenon that transcends bone science. If you understand this technique, you will understand the direction of modern orthopedic surgery and regenerative medicine. Professor Ilizarov's morale and the spirit of fighting to alleviate the suffering of patients were transferred to the Chinese medical community. This awakened many Chinese doctors who followed the norms of the old and stereotyped medicine. After celebrating the centenary of the birth of Professor Ilizarov, ASAMI China will also prepare for the “Sixth ASAMI &amp; ILLRS-BR World Conference (Beijing – 2023)”. We believe that orthopedics and allied disciplines around the world have a bright future.

Molecular Biology in the Improvement of Biological Nitrogen Fixation by Rhizobia and Extending the Scope to Cereals.

The contribution of biological nitrogen fixation to the total N requirement of food and feed crops diminished in importance with the advent of synthetic N fertilizers, which fueled the “green revolution”. Despite being environmentally unfriendly, the synthetic versions gained prominence primarily due to their low cost, and the fact that most important staple crops never evolved symbiotic associations with bacteria. In the recent past, advances in our knowledge of symbiosis and nitrogen fixation and the development and application of recombinant DNA technology have created opportunities that could help increase the share of symbiotically-driven nitrogen in global consumption. With the availability of molecular biology tools, rapid improvements in symbiotic characteristics of rhizobial strains became possible. Further, the technology allowed probing the possibility of establishing a symbiotic dialogue between rhizobia and cereals. Because the evolutionary process did not forge a symbiotic relationship with the latter, the potential of molecular manipulations has been tested to incorporate a functional mechanism of nitrogen reduction independent of microbes. In this review, we discuss various strategies applied to improve rhizobial strains for higher nitrogen fixation efficiency, more competitiveness and enhanced fitness under unfavorable environments. The challenges and progress made towards nitrogen self-sufficiency of cereals are also reviewed. An approach to integrate the genetically modified elite rhizobia strains in crop production systems is highlighted.

Enhanced Symbiotic Characteristics in Bacterial Genomes with the Disruption of rRNA Operon.

Simple SummaryExploring the genomic changes that organisms have undergone to adapt to their specific environment is one of the most important processes in ecology and evolutionary biology. Here, we found that almost all rRNA operon-unlinked bacteria are symbiotic bacteria, which could be evidence of specific selective pressures in symbionts like genome reduction. This is meaningful and suggests that not only does the copy number variation of the rRNA operon sensitively respond to the bacterial lifestyle, but structural modification can also strongly reflect adaptation to the surrounding environmental conditions.Ribosomal RNA is an indispensable molecule in living organisms that plays an essential role in protein synthesis. Especially in bacteria, 16S, 23S, and 5S rRNAs are usually co-transcribed as operons. Despite the positive effects of rRNA co-transcription on growth and reproduction rate, a recent study revealed that bacteria with unlinked rRNA operons are more widespread than expected. However, it is still unclear why the rRNA operon is broken. Here, we explored rRNA operon linkage status in 15,898 bacterial genomes and investigated whether they have common features or lifestyles; 574 genomes were found to have unlinked rRNA operons and tended to be phylogenetically conserved. Most of them were symbionts and showed enhanced symbiotic genomic features such as reduced genome size and high adenine–thymine (AT) content. In an eggNOG-mapper analysis, they were also found to have significantly fewer genes than rRNA operon-linked bacteria in the “transcription” and “energy production and conversion in metabolism” categories. These genomes also tend to decrease RNases related to the synthesis of ribosomes and tRNA processing. Based on these results, the disruption of the rRNA operon seems to be one of the tendencies associated with the characteristics of bacteria requiring a low dynamic range.

STRAINS OF Paraburkholderia ORIGINATED FROM RUPESTRIAN FIELDS PROMOTE THE GROWTH OF Mimosa foliolosa

ABSTRACT Mimosa foliolosa is a promising native species of rupestrian fields for revegetation of degraded areas in this ecosystem. The symbiosis between leguminous plants and N2-fixing bacteria may play an important role in the recovery of these areas, since these plants have better development and are more resistant to the attack of pathogens. In addition to the biological nitrogen fixation (BNF), these bacteria can promote plant growth through other processes, such as phosphate solubilization and siderophore production. We studied the cultural and genetic characteristics of 11 bacterial strains, isolated from rupestrian field soils using Mimosa tenuiflora as “trap” plant. We evaluated these strains considering their symbiotic characteristics such as nodulation, and growth-promotion of Mimosa foliolosa, as well as their ability for siderophore production and phosphate solubilization. Native N2-fixing bacterial strains belonging to the Paraburkholderia genus (UFLA01-750, UFLA01-728, UFLA01-725, and UFLA01-757), showed high symbiotic efficiency with M. foliolosa. These strains also solubilized calcium phosphate and produced siderophores, exhibiting high functional diversity and potential for use in revegetation projects.