Symbiont Assemblages Research Articles

Pan-genome insights into adaptive evolution of bacterial symbionts in mixed host-microbe symbioses represented by human gut microbiota Bacteroides cellulosilyticus

Animal hosts harbor diverse assemblages of microbial symbionts that play crucial roles in the host's lifestyle. The link between microbial symbiosis and host development remains poorly understood. In particular, little is known about the adaptive evolution of gut bacteria in host–microbe symbioses. Recently, symbiotic relationships have been categorized as open, closed, or mixed, reflecting their modes of inter-host transmission and resulting in distinct genomic features. Members of the genus Bacteroides are the most abundant human gut microbiota and possess both probiotic and pathogenic potential, providing an excellent model for studying pan-genome evolution in symbiotic systems. Here, we determined the complete genome of an novel clinical strain PL2022, which was isolated from a blood sample and performed pan-genome analyses on a representative set of Bacteroides cellulosilyticus strains to quantify the influence of the symbiotic relationship on the evolutionary dynamics. B. cellulosilyticus exhibited correlated genomic features with both open and closed symbioses, suggesting a mixed symbiosis. An open pan-genome is characterized by abundant accessory gene families, potential horizontal gene transfer (HGT), and diverse mobile genetic elements (MGEs), indicating an innovative gene pool, mainly associated with genomic islands and plasmids. However, massive parallel gene loss, weak purifying selection, and accumulation of positively selected mutations were the main drivers of genome reduction in B. cellulosilyticus. Metagenomic read recruitment analyses showed that B. cellulosilyticus members are globally distributed and active in human gut habitats, in line with predominant vertical transmission in the human gut. However, existence and/or high abundance were also detected in non-intestinal tissues, other animal hosts, and non-host environments, indicating occasional horizontal transmission to new niches, thereby creating arenas for the acquisition of novel genes. This case study of adaptive evolution under a mixed host–microbe symbiosis advances our understanding of symbiotic pan-genome evolution. Our results highlight the complexity of genetic evolution in this unusual intestinal symbiont.

Temporal and spatial dynamics of coral symbiont assemblages are affected by local and global impacts

The influence of abiotic variables and anthropogenic pressure on symbiodiniaceans associated with the scleractinian corals Mussismilia hispida and Siderastrea stellata were assessed quarterly at Armação dos Búzios, Brazil, for over 18 months. Thirty-eight Symbiodiniaceae ITS2 rDNA phylotypes were found by metabarcoding, with eight comprising new phylotypes. Both hosts maintained their generalist pattern, with 1–3 dominant lineages. An environmental pressure index and changes in seawater temperature explained the variations in the structure and diversity of Symbiodiniaceae assemblages over time and space. A mild bleaching event affected the photosymbiotic assemblage structure, even in non-bleached colonies. The highly dynamic and diverse photosymbiont assemblages were constantly driven by the influence of environmental variables and human-induced impacts. Furthermore, new strains of Symbiodiniaceae might be associated with lower temperatures caused by upwelling, which is characteristic of this subtropical coral community, highlighting the region's idiosyncrasy and the need for further studies of this coral system.

Phylosymbiosis: The Eco-Evolutionary Pattern of Insect-Symbiont Interactions.

Insects harbor diverse assemblages of bacterial and fungal symbionts, which play crucial roles in host life history. Insects and their various symbionts represent a good model for studying host-microbe interactions. Phylosymbiosis is used to describe an eco-evolutionary pattern, providing a new cross-system trend in the research of host-associated microbiota. The phylosymbiosis pattern is characterized by a significant positive correlation between the host phylogeny and microbial community dissimilarities. Although host-symbiont interactions have been demonstrated in many insect groups, our knowledge of the prevalence and mechanisms of phylosymbiosis in insects is still limited. Here, we provide an order-by-order summary of the phylosymbiosis patterns in insects, including Blattodea, Coleoptera, Diptera, Hemiptera, Hymenoptera, and Lepidoptera. Then, we highlight the potential contributions of stochastic effects, evolutionary processes, and ecological filtering in shaping phylosymbiotic microbiota. Phylosymbiosis in insects can arise from a combination of stochastic and deterministic mechanisms, such as the dispersal limitations of microbes, codiversification between symbionts and hosts, and the filtering of phylogenetically conserved host traits (incl., host immune system, diet, and physiological characteristics).

Disentangling the determinants of symbiotic species richness in native and invasive gammarids (Crustacea, Amphipoda) of the Baltic region

Dispersal of alien species is a global problem threatening native biodiversity. Co-introduction of non-native parasites and pathogens adds to the severity of this threat, but this indirect impact has received less attention. To shed light on the key factors determining the richness of microorganisms in native and invasive host species, we compared symbiotic (parasitic and epibiotic) communities of gammarids across different habitats and localities along the Baltic coast of Poland. Seven gammarid species, two native and five invasive, were sampled from 16 freshwater and brackish localities. Sixty symbiotic species of microorganisms of nine phyla were identified. This taxonomically diverse species assemblage of symbionts allowed us to assess the effect of host translocation and regional ecological determinants driving assembly richness in the gammarid hosts. Our results revealed that (i) the current assemblages of symbionts of gammarid hosts in the Baltic region are formed by native and co-introduced species; (ii) species richness of the symbiotic community was higher in the native Gammarus pulex than in the invasive hosts, probably reflecting a process of species loss by invasive gammarids in the new area and the distinct habitat conditions occupied by G. pulex and invasive hosts; (iii) both host species and locality were key drivers shaping assembly composition of symbionts, whereas habitat condition (freshwater versus brackish) was a stronger determinant of communities than geographic distance; (iv) the dispersion patterns of the individual species richness of symbiotic communities were best described by Poisson distributions; in the case of an invasive host, the dispersion of the rich species diversity may switch to a right-skewed negative binomial distribution, suggesting a host-mediated regulation process. We believe this is the first analysis of the symbiotic species richness in native and invasive gammarid hosts in European waters based on original field data and a broad range of taxonomic groups including Microsporidia, Choanozoa, Ciliophora, Apicomplexa, Platyhelminthes, Nematoda, Nematomorha, Acanthocephala and Rotifera, to document the patterns of species composition and distribution.

Diversity and structure of feather mite communities on seabirds from the north–east Atlantic and Mediterranean Sea

The richness and structure of symbiont assemblages are shaped by many factors acting at different spatial and temporal scales. Among them, host phylogeny and geographic distance play essential roles. To explore drivers of richness and structure of symbiont assemblages, feather mites and seabirds are an attractive model due to their peculiar traits. Feather mites are permanent ectosymbionts and considered highly host-specific with limited dispersal abilities. Seabirds harbour species-rich feather mite communities and their colonial breeding provides opportunities for symbionts to exploit several host species. To unravel the richness and test the influence of host phylogeny and geographic distance on mite communities, we collected feather mites from 11 seabird species breeding across the Atlantic Ocean and Mediterranean Sea. Using morphological criteria, we identified 33 mite species, of which 17 were new or recently described species. Based on community similarity analyses, mite communities were clearly structured by host genera, while the effect of geography within host genera or species was weak and sometimes negligible. We found a weak but significant effect of geographic distance on similarity patterns in mite communities for Cory’s shearwaters Calonectris borealis. Feather mite specificity mainly occurred at the host-genus rather than at host-species level, suggesting that previously inferred host species-specificity may have resulted from poorly sampling closely related host species. Overall, our results show that host phylogeny plays a greater role than geography in determining the composition and structure of mite assemblages and pinpoints the importance of sampling mites from closely-related host species before describing mite specificity patterns.

Baseline Analysis of Endophytic Fungal Associates of Solenopsis invicta Buren from Mounds across Five Counties of Guangdong Province, China

Red imported fire ants mounds have been suggested as a potential reservoir for beneficial entomopathogenic fungal species that are vital for more complex roles in the ecosystem aside from infecting the insects. In the current study, the assemblage of fungal symbionts of the red imported fire ants (RIFA) were obtained across five cities in Guangdong Province, China. The sampling areas were selected because of high occurrence of fire ants mounds in the regions. Mound soils, plant debris within mounds, and ants were collected from three sampling locations in each city for potential isolation of entomopathogenic fungal associates of RIFA. All samples were collected during the spring of 2021. Following successful isolation from substrates, the patterns of fungal species composition, and richness were evaluated. In total, 843 isolates were recovered, and based on their phenotypic distinctiveness and molecular characterization based on DNA sequences of multiple loci including the ITS, SSU, and LSU regions, 46 fungal taxa were obtained, including 12 that were unidentified. Species richness and abundance was highest in the mound soils, while the lowest value was recorded from the ant body. As per the different locations, the highest abundance level was recorded in Zhuhai, where 15 fungal taxa were cultivated. The most common taxa across all substrates and locations was Talaromyces diversus. A baseline analysis of the fungal community composition of RIFA would better our understanding on the interactions between these social ants and their associated microbial organisms, and this knowledge in turn would be important for the successful management of the RIFA.

Microbially facilitated nitrogen cycling in tropical corals

Tropical scleractinian corals support a diverse assemblage of microbial symbionts. This ‘microbiome’ possesses the requisite functional diversity to conduct a range of nitrogen (N) transformations including denitrification, nitrification, nitrogen fixation and dissimilatory nitrate reduction to ammonium (DNRA). Very little direct evidence has been presented to date verifying that these processes are active within tropical corals. Here we use a combination of stable isotope techniques, nutrient uptake calculations and captured metagenomics to quantify rates of nitrogen cycling processes in a selection of tropical scleractinian corals. Denitrification activity was detected in all species, albeit with very low rates, signifying limited importance in holobiont N removal. Relatively greater nitrogen fixation activity confirms that corals are net N importers to reef systems. Low net nitrification activity suggests limited N regeneration capacity; however substantial gross nitrification activity may be concealed through nitrate consumption. Based on nrfA gene abundance and measured inorganic N fluxes, we calculated significant DNRA activity in the studied corals, which has important implications for coral reef N cycling and warrants more targeted investigation. Through the quantification and characterisation of all relevant N-cycling processes, this study provides clarity on the subject of tropical coral-associated biogeochemical N-cycling.

Classical and computed tomographic anatomical analyses in a not-so-cryptic Alviniconcha species complex from hydrothermal vents in the SW Pacific

The chemosymbiotic gastropod Alviniconcha (Provannidae), first described in 1988, is one of the most emblematic hydrothermal-vent taxa described from the Central Indian Ridge and the Southwest (SW) Pacific. Symbiotic bacteria found in the gill of Alviniconcha are thought to be their principal source of nutrition. In the SW Pacific, species distributions for A. kojimai, A. boucheti – and to a lesser extent A. strummeri – overlap. While Alviniconcha species do not appear to truly co-exist in these highly energetic but spatially limited habitats, certain species regularly co-occur within a single vent field and in rare instances, the same edifice. Past research suggests that SW-Pacific Alviniconcha species might aggregate around fluids with distinct geothermal profiles. These small-scale distribution patterns have been attributed to differences in their symbiont assemblages or host physiologies. However, little is known about the anatomy of most Alviniconcha species, beyond that detailed for the type species Alviniconcha hessleri, whose geographic range does not overlap with other congeners. In fact, species within this genus are currently described as cryptic, despite the absence of any comparative morphological studies to assess this. To test whether the genus is genuinely cryptic and identify any functional differences in host anatomy that might also mediate habitat partitioning in SW Pacific species, the current study examined the morphoanatomy of A. kojimai, A. boucheti and A. strummeri from the Fatu Kapa vent field, an area of hydrothermal activity recently discovered north of the Lau Basin near the Wallis and Futuna Islands and the only known example where all three species occur within adjacent vent fields. A combination of detailed dissections, histology and X-ray computed tomography demonstrate that A. kojimai, A. strummeri and A. boucheti are readily identifiable based on shell morphology and ornamentation alone, and therefore not truly cryptic. These traits provide a rapid and reliable means for species identification. However, aside from some subtle differences in radular morphology, these species of Alviniconcha exhibit conserved anatomical features, providing no evidence that functional host anatomy is implicated in habitat partitioning. This provides support for the current belief that host-species distributions are probably governed by symbiont-mediated physiological factors.

Host growth and survivorship varies with endosymbiotic algal partner in developing cnidarians

MEPS Marine Ecology Progress Series Contact the journal Facebook Twitter RSS Mailing List Subscribe to our mailing list via Mailchimp HomeLatest VolumeAbout the JournalEditorsTheme Sections MEPS 612:87-100 (2019) - DOI: https://doi.org/10.3354/meps12876 Host growth and survivorship varies with endosymbiotic algal partner in developing cnidarians Daniel M. Poland1, Mary Alice Coffroth2,* 1Department of Biological Sciences, University at Buffalo, Buffalo, NY 14260, USA 2Department of Geology, Graduate Program in Evolution, Ecology and Behavior, University at Buffalo, Buffalo, NY 14260, USA *Corresponding author: coffroth@buffalo.edu ABSTRACT: Juvenile cnidarians acquire diverse assemblages of dinoflagellate symbionts within the family Symbiodiniaceae from the environment, and the dominant symbionts often differ from those in conspecific adult hosts. Such non-homologous symbionts may confer benefits to their juvenile hosts that are not available from homologous symbionts (those found in adult symbioses). Benefits gained by harboring several heterologous symbiont types remain poorly understood. We investigated host growth and survivorship with several symbiont partners that naturally occur within juvenile Briareum asbestinum (Alcyonacea). We infected newly settled aposymbiotic juveniles with symbiont types within cultured Breviolum (formerly clade B) and Symbiodinium (formerly clade A) that naturally occur within juveniles of this host. The symbiont partner community significantly affected overall growth and mortality rates of juveniles during this 11 mo laboratory study. Heterologous symbionts found within juveniles may confer survival benefits, but they vary in the relative contributions to host fitness. Symbiont types within Breviolum provided the greatest growth and survivorship benefits to B. asbestinum hosts, and early acquisition of these symbionts increased survivorship as those juveniles initially harboring a more mixed population exhibited higher mortality rates. These findings demonstrate that symbiont types that naturally occur in developing octocoral hosts have significantly different effects on host growth and survival, and some types in particular play an important role in octocoral symbioses. KEY WORDS: Symbiodinium · Octocoral · Symbiosis · Ontogeny · Acquisition · Briareum asbestinum Full text in pdf format Supplementary material PreviousNextCite this article as: Poland DM, Coffroth MA (2019) Host growth and survivorship varies with endosymbiotic algal partner in developing cnidarians. Mar Ecol Prog Ser 612:87-100. https://doi.org/10.3354/meps12876 Export citation RSS - Facebook - Tweet - linkedIn Cited by Published in MEPS Vol. 612. Online publication date: March 07, 2019 Print ISSN: 0171-8630; Online ISSN: 1616-1599 Copyright © 2019 Inter-Research.

Evidence for Gut-Associated Serratia symbiotica in Wild Aphids and Ants Provides New Perspectives on the Evolution of Bacterial Mutualism in Insects.

Many insects engage in symbiotic associations with diverse assemblages of bacterial symbionts that can deeply impact on their ecology and evolution. The intraspecific variation of symbionts remains poorly assessed while phenotypic effects and transmission behaviors, which are key processes for the persistence and evolution of symbioses, may differ widely depending on the symbiont strains. Serratia symbiotica is one of the most frequent symbiont species in aphids and a valuable model to assess this intraspecific variation since it includes both facultative and obligate symbiotic strains. Despite evidence that some facultative S. symbiotica strains exhibit a free-living capacity, the presence of these strains in wild aphid populations, as well as in insects with which they maintain regular contact, has never been demonstrated. Here, we examined the prevalence, diversity, and tissue tropism of S. symbiotica in wild aphids and associated ants. We found a high occurrence of S. symbiotica infection in ant populations, especially when having tended infected aphid colonies. We also found that the S. symbiotica diversity includes strains found located within the gut of aphids and ants. In the latter, this tissue tropism was found restricted to the proventriculus. Altogether, these findings highlight the extraordinary diversity and versatility of an insect symbiont and suggest the existence of novel routes for symbiont acquisition in insects.

Ophiostomatoid fungi associated with the spruce bark beetle Ips typographus, including 11 new species from China

Ips typographus (Coleoptera, Scolytinae) is a spruce-infesting bark beetle that occurs throughout Europe and Asia. The beetle can cause considerable damage, especially when colonized trees are stressed and beetle populations increase. Although some studies have shown that populations of I. typographus in Europe, China and Japan are genetically distinct, these populations are biologically similar, including a strong association with ophiostomatoid fungi. To date, only two Leptographium spp. have been reported from the beetle in China, while 40 species have been reported from Europe and 13 from Japan. The aims of this study were to identify the ophiostomatoid fungal associates of I. typographus in north-eastern China, and to determine whether the fungal assemblages reflect the different geographical populations of the beetle. Field surveys in Jilin and Heilongjiang provinces yielded a total of 1 046 fungal isolates from 145 beetles and 178 galleries. Isolates were grouped based on morphology and representatives of each group were identified using DNA sequences of the ribosomal LSU, ITS, β-tubulin, calmodulin and elongation factor 1-α gene regions. A total of 23 species of ophiostomatoid fungi were identified, including 12 previously described species and 11 novel species, all of which are described here. The dominant species were Ophiostoma bicolor, Leptographium taigense and Grosmannia piceiperda D, representing 40.5 %, 27.8 % and 17.8 % of the isolates, respectively. Comparisons of species from China, Europe and Japan are complicated by the fact that some of the European and all the Japanese species were identified based only on morphology. However, assuming that those identifications are correct, five species were shared between Europe, Japan and China, two species were shared between China and Japan, five between Europe and China, and two between Europe and Japan. Consequently, Ips typographus populations in these different geographic areas have different fungal assemblages, suggesting that the majority of these beetle-associations are promiscuous. The results also suggested that the symbionts of the bark beetle do not reflect the population structures of the beetle. The use of fungal symbiont assemblages to infer population structures and invasion history of its vectors should thus be interpreted with circumspection.

Variable thermal stress tolerance of the reef-associated symbiont-bearing foraminifera Amphistegina linked to differences in symbiont type

Adaptation, acclimatization and symbiont diversity are known to regulate thermal tolerance in corals, but the role of these mechanisms remains poorly constrained in other photosymbioses, such as large benthic foraminifera (LBFs), which are known to bleach at temperatures that are likely to be exceeded in the near future. LBFs inhabit a broad range of shallow-water settings. Within species, differences in thermal tolerance have been found among populations from different habitats, but it is not clear whether such differences occur among LBFs inhabiting similar habitats, but differing in other aspects, such as symbiont type. To this end, we compared responses to thermal stress in specimens from a population of Amphistegina lessonii, an abundant Indo-Pacific species, to specimens of Amphistegina gibbosa, its Atlantic counterpart, from a similar environment but two different water depths (5 and 18 m). Test groups of each species were exposed in a common experiment to three thermal stress scenarios over a four-week period. Growth, respiration, mortality and motility were measured to characterize the holobiont response. Coloration, photosynthesis and chlorophyll a content were measured to determine the response of the endosymbiotic diatoms. The photosymbionts were characterized by genetic fingerprinting. Our results show that, although groups of A. gibbosa were collected from different habitats, their responses were similar, indicating only marginally higher tolerance to thermal peaks in specimens from the shallower site. In contrast, species-specific differences were stronger, with A. lessonii showing higher tolerance to episodic stress and less pronounced impacts of chronic stress on motility, growth and photosymbiont performance. These interspecies variations are consistent with the presence of different and more diverse symbiont assemblages in A. lessonii compared with A. gibbosa. This study demonstrates the importance of considering symbiont diversity in the assessment of intra- and interspecific variations in stress responses in LBFs.

Evidence of photoacclimatization at mesophotic depths in the coral-Symbiodinium symbiosis at Flower Garden Banks National Marine Sanctuary and McGrail Bank

Similar to shallower conspecifics, mesophotic scleractinian corals found at ~ 30–150 m depths maintain important symbioses with photosynthetic microalgae in the genus Symbiodinium. Despite the importance of coral-algal symbioses in corals’ ability to thrive in multiple dynamic environments and potential role in connectivity, few studies have focused on mesophotic Symbiodinium assemblages. This study examines these assemblages in Montastraea cavernosa found at shallow (20–25 m) and mesophotic (45–50 m) depths at Flower Garden Banks National Marine Sanctuary and McGrail Bank, in the northwest Gulf of Mexico. Mesophotic corals contained significantly more Symbiodinium cells, more chlorophyll a per Symbiodinium cell, and more chlorophyll a and c2 per unit area coral tissue than shallow corals. However, both mesophotic and shallow M. cavernosa contained similar chlorophyll c2 per Symbiodinium cell. Next-generation sequencing of the internal transcribed spacer region (ITS2) of the ribosomal DNA indicated similar Symbiodinium assemblage diversity at all banks and between depths. All assemblages were dominated by sequences most closely related to S. goreaui, type C1, with three additional low-abundance sequences, identified as 2 C types and 1 A type, also consistently observed among colonies. Both the dominant C1 sequence and the background sequences persisted over two sampling years. These results suggest that algal symbiont assemblages will not limit connectivity potential in M. cavernosa in the northwest Gulf of Mexico. Furthermore, we hypothesize that increased Symbiodinium abundance may represent an effective light-harvesting strategy on light-limited mesophotic coral reefs.

Symbiotic flagellate protists as cryptic drivers of adaptation and invasiveness of the subterranean termite Reticulitermes grassei Clément.

Changes in flagellate protist communities of subterranean termite Reticulitermes grassei across different locations were evaluated following four predictions: (i) Rural endemic (Portugal mainland) termite populations will exhibit high diversity of symbionts; (ii) invasive urban populations (Horta city, Faial island, Azores), on the contrary, will exhibit lower diversity of symbionts, showing high similarity of symbiont assemblages through environmental filtering; (iii) recent historical colonization of isolated regions—as the case of islands—will imply a loss of symbiont diversity; and (iv) island isolation will trigger a change in colony breeding structure toward a less aggressive behavior. Symbiont flagellate protist communities were morphologically identified, and species richness and relative abundances, as well as biodiversity indices, were used to compare symbiotic communities in colonies from urban and rural environments and between island invasive and mainland endemic populations. To evaluate prediction on the impact of isolation (iv), aggression tests were performed among termites comprising island invasive and mainland endemic populations. A core group of flagellates and secondary facultative symbionts was identified. Termites from rural environments showed, in the majority of observed colonies, more diverse and abundant protist communities, probably confirming prediction (i). Corroborating prediction (ii), the two least diverse communities belong to termites captured inside urban areas. The Azorean invasive termite colonies had more diverse protist communities than expected and prediction (iii) which was not verified within this study. Termites from mainland populations showed a high level of aggressiveness between neighboring colonies, in contrast to the invasive colonies from Horta city, which were not aggressive to neighbors according to prediction (iv). The symbiotic flagellate community of R. grassei showed the ability to change in a way that might be consistent with adaptation to available conditions, possibly contributing to optimization of the colonization of new habitats and spreading of its distribution area, highlighting R. grassei potential as an invasive species.

Annelid symbiont assemblage and European stone crayfish − a deterministic relationship with implications for conservation management

The protected European stone crayfish, Austropotamobius torrentium , is a host to epibionts inhabiting its exoskeleton. Despite evidence of the close association of these epibionts to the crayfish and the beneficial services provided for the crayfish, the main factors influencing their occurrence, distribution and abundance are still poorly understood. In order to investigate the stone crayfish epibiont community, the ecological requirements of individual species, and aspects of the host-epibiont relationship we collected data at several crayfish populations in Austria, Switzerland and Germany. At each location, we recorded the epibiont position on the crayfish host along with a number of biotic and abiotic parameters. Apart from recording the Branchiobdella species B. parasita , B. hexadonta , B. pentadonta and B. balcanica , we detected for the first time the polychaete Hystricosoma chappuisi in the European Alps. Species-specific biogeographical and habitat factors such as river catchment borders, crayfish length, water temperature and nutrients concentration were identified to be important for the occurrence and abundance of epibionts. Branchiobdella species were strongly linked to certain host body areas, providing evidence for the existence of different functional traits within the annelid assemblage. With this study we demonstrate that the crayfish–epibionts relationship includes structural and functional complexities that can be important for defining management units in future conservation policies. Due to benefits for the mutualistic relationship, restocking and reintroduction actions are likely to be more successful, if ecological requirements of both the host and the epibiont species are considered.

Ontogenetic shifts in a freshwater cleaning symbiosis: consequences for hosts and their symbionts.

Animal fitness is influenced by diverse assemblages of internal and external symbionts. These assemblages often change throughout host ontogeny, but the mechanisms that underlie these changes and their consequences for host fitness are seldom revealed. Here we examine a cleaning symbiosis between crayfish and an assemblage of ectosymbiotic branchiobdellidan worms to uncover what mechanisms drive changes in symbiont composition during host ontogeny and the consequences of these changes for both the host and symbionts. In surveys of a North Carolina river, the dominant worm species shifted from Cambarincola philadelphicus to Cambarincola ingens as crayfish (Cambarus bartonii) increased in size. We demonstrate that this shift is a function of host regulation by small crayfish and exclusion by a dominant symbiont on large crayfish. In a controlled lab experiment, small crayfish often removed their symbionts but C. ingens was removed at a higher rate than C. philadelphicus. In contrast, C. ingens had higher survivorship and reproduction than C. philadelphicus on large crayfish. We also measured the effect of each worm species on crayfish growth through ontogeny; neither worm species had an effect on small crayfish but both species had similar positive effects on the growth of large crayfish relative to controls. Evidence from another experiment suggested that intraguild predation by C. ingens caused a decline in C. philadelphicus on large crayfish. We have shown that shifts in partner fitness are a function of host size and that these shifts can involve the succession of symbionts. Further, our results suggest that changes in the outcome of symbioses can remain robust throughout host ontogeny despite interactive mechanisms that lead to shifts in symbiont community structure.

An exploration of the fungal assemblage in each life history stage of the butterfly, Lycaeides melissa (Lycaenidae), as well as its host plant Astragalus canadensis (Fabaceae)

Abstract Understanding the ecological role of symbiotic microbes is an area of increasing interest. With regard to mediating plant–insect interactions, it has become apparent that symbiotic microbes are of fundamental importance. However, elucidation of the roles of symbiotic microbes in these systems has been hampered by a lack of knowledge regarding microbial community structure; with fungi, in particular, being understudied components of symbiont assemblages. Here, we present one of the first studies to characterize fungi associated with each life history stage of a lepidopteran herbivore (egg, larva, pupa, and adult) and the leaves of its host plant. We used a culture-independent approach and explored the possibility that plant-associated fungi may colonize butterflies. The fungal assemblage recovered from each butterfly life history stage was a subset of the fungi that occurred on host plant leaves. The most diverse fungal assemblage recovered from a butterfly life history stage was associated with eggs of wild-caught females. Because fungi recovered from all butterfly life history stages were also found on host plant tissues, our study raises the possibility that butterflies could disperse fungi between individual plants. Additionally, we observed a marked reduction in fungal diversity during pupation. As one of the first studies examining the fungal microbiome of a holometabolous insect throughout its life history, our results highlight the diversity of fungi associated with insect herbivores and their hosts and suggest possibilities for further work examining plant–insect–fungal interactions.

Metabolomics of reef benthic interactions reveals a bioactive lipid involved in coral defence.

Holobionts are assemblages of microbial symbionts and their macrobial host. As extant representatives of some of the oldest macro-organisms, corals and algae are important for understanding how holobionts develop and interact with one another. Using untargeted metabolomics, we show that non-self interactions altered the coral metabolome more than self-interactions (i.e. different or same genus, respectively). Platelet activating factor (PAF) and Lyso-PAF, central inflammatory modulators in mammals, were major lipid components of the coral holobionts. When corals were damaged during competitive interactions with algae, PAF increased along with expression of the gene encoding Lyso-PAF acetyltransferase; the protein responsible for converting Lyso-PAF to PAF. This shows that self and non-self recognition among some of the oldest extant holobionts involve bioactive lipids identical to those in highly derived taxa like humans. This further strengthens the hypothesis that major players of the immune response evolved during the pre-Cambrian.

Fickle or Faithful: The Roles of Host and Environmental Context in Determining Symbiont Composition in Two Bathymodioline Mussels

The Mediterranean Sea and adjoining East Atlantic Ocean host a diverse array of small-sized mussels that predominantly live on sunken, decomposing organic remains. At least two of these, Idas modiolaeformis and Idas simpsoni, are known to engage in gill-associated symbioses; however, the composition, diversity and variability of these symbioses with changing habitat and location is poorly defined. The current study presents bacterial symbiont assemblage data, derived from 454 pyrosequencing carried out on replicate specimens of these two host species, collected across seven sample sites found in three oceanographic regions in the Mediterranean and East Atlantic. The presence of several bacterial OTUs in both the Mediterranean Sea and eastern Atlantic suggests that similar symbiont candidates occur on both sides of the Strait of Gibraltar. The results reveal markedly different symbiotic modes in the two species. Idas modiolaeformis displays high symbiont diversity and flexibility, with strong variation in symbiont composition from the East Mediterranean to the East Atlantic. Idas simpsoni displays low symbiont diversity but high symbiont fidelity, with a single dominant OTU occurring in all specimens analysed. These differences are argued to be a function of the host species, where subtle differences in host evolution, life-history and behaviour could partially explain the observed patterns. The variability in symbiont compositions, particularly in Idas modiolaeformis, is thought to be a function of the nature, context and location of the habitat from which symbiont candidates are sourced.

Geographic structure and host specificity shape the community composition of symbiotic dinoflagellates in corals from the Northwestern Hawaiian Islands

How host–symbiont assemblages vary over space and time is fundamental to understanding the evolution and persistence of mutualistic symbioses. In this study, the diversity and geographic structure of coral–algal partnerships across the remote Northwestern Hawaiian Islands archipelago was investigated. The diversity of symbionts in the dinoflagellate genus Symbiodinium was characterised using the ribosomal internal transcribed spacer 2 (ITS2) gene in corals sampled at ten reef locations across the Northwestern Hawaiian Islands. Symbiodinium diversity was reported using operational taxonomic units and the distribution of Symbiodinium across the island archipelago investigated for evidence of geographic structure using permutational MANOVA. A 97 % sequence similarity of the ITS2 gene for characterising Symbiodinium diversity was supported by phylogenetic and ecological data. Four of the nine Symbiodinium evolutionary lineages (clades A, C, D, and G) were identified from 16 coral species at French Frigate Shoals, and host specificity was a dominant feature in the symbiotic assemblages at this location. Significant structure in the diversity of Symbiodinium was also found across the archipelago in the three coral species investigated. The latitudinal gradient and subsequent variation in abiotic conditions (particularly sea surface temperature dynamics) across the Northwestern Hawaiian Islands encompasses an environmental range that decouples the stability of host–symbiont assemblages across the archipelago. This suggests that local adaptation to prevailing environmental conditions by at least one partner in coral–algal mutualism occurs prior to the selection pressures associated with the maintenance of a symbiotic state.