Symbiodiniaceae Density Research Articles

Unraveling the physiological responses of morphologically distinct corals to low oxygen

Background Low oxygen in marine environments, intensified by climate change and local pollution, poses a substantial threat to global marine ecosystems, especially impacting vulnerable coral reefs and causing metabolic crises and bleaching-induced mortality. Yet, our understanding of the potential impacts in tropical regions is incomplete. Furthermore, uncertainty surrounds the physiological responses of corals to hypoxia and anoxia conditions. Methods We initially monitored in situ dissolved oxygen (DO) levels at Kham Island in the lower Gulf of Thailand. Subsequently, we conducted a 72-hour experimental exposure of corals with different morphologies—Pocillopora acuta, Porites lutea, and Turbinaria mesenterina—to low oxygen conditions, while following a 12/12-hour dark/light cycle. Three distinct DO conditions were employed: ambient (DO 6.0 ± 0.5 mg L−1), hypoxia (DO 2.0 ± 0.5 mg L−1), and anoxia (DO < 0.5 mg L−1). We measured and compared photosynthetic efficiency, Symbiodiniaceae density, chlorophyll concentration, respiratory rates, primary production, and calcification across the various treatments. Results Persistent hypoxia was observed at the study site. Subsequent experiments revealed that low oxygen levels led to a notable decrease in the maximum quantum yield over time in all the species tested, accompanied by declining rates of respiration and calcification. Our findings reveal the sensitivity of corals to both hypoxia and anoxia, particularly affecting processes crucial to energy balance and structural integrity. Notably, P. lutea and T. mesenterina exhibited no mortality over the 72-hour period under hypoxia and anoxia conditions, while P. acuta, exposed to anoxia, experienced mortality with tissue loss within 24 hours. This study underscores species-specific variations in susceptibility associated with different morphologies under low oxygen conditions. The results demonstrate the substantial impact of deoxygenation on coral growth and health, with the compounded challenges of climate change and coastal pollution exacerbating oxygen availability, leading to increasingly significant implications for coral ecosystems.

Differential strategies developed by two light-dependent scleractinian corals to extend their vertical range to mesophotic depths

Mesophotic coral ecosystems are characterised by the presence of photosynthetic scleractinian corals despite the decreasing amounts of light available with depth. To better understand physiological strategies across a broad depth gradient, we studied the biological trait responses of Pocillopora cf. verrucosa from 6 to 60 m depth and Pachyseris “speciosa” spp. from 20 to 90 m depth at four islands of French Polynesia. Specifically, we characterised associated Symbiodiniaceae communities, photophysiological traits (Symbiodiniaceae density and chlorophyll concentrations), micro-morphology and trophic plasticity (autotrophy vs heterotrophy inferred from stable isotopes). Our results showed that both taxa can live at mesophotic depths without significant genetic structuring in their generic Symbiodiniaceae communities, mainly composed of Cladocopium and Durusdinium. Yet, the prevalence of Symbiodiniaceae ITS2 profiles revealed location-based variations that sometimes interact with depth and highlight putative shallow- or depth-tolerant taxa. For both taxa, symbiont density and chlorophyll pigment concentrations increased with increasing depth. We also found a change in their skeletal micro-morphology with an increase in the inter-corallite distance for Pocillopora cf. verrucosa and a decrease in the height of septa for Pachyseris “speciosa” spp. with depth. Finally, we found no isotopic evidence of switching to a more heterotrophic diet as their primary energy source, although host–tissue δ13C ratios became more negative with depth in both corals. Overall, our findings show similarity (across the two species) and species-specific strategies (biological trait patterns with increasing depth) underlying the capacity of symbiotic scleractinian corals to live in low-light environments.

Microbial and transcriptional response of Acropora valida and Turbinaria peltata to Vibrio coralliilyticus challenge: insights into corals disease resistance

BackgroundCoral diseases are significant drivers of global coral reef degradation, with pathogens dominated by Vibrio coralliilyticus playing a prominent role in the development of coral diseases. Coral phenotype, symbiotic microbial communities, and host transcriptional regulation have been well-established as factors involved in determining coral disease resistance, but the underlying mechanisms remain incompletely understood.MethodsThis study employs high-throughput sequencing to analyse the symbiotic microbial and transcriptional response of the hosts in order to evaluate the disease resistance of Acropora valida and Turbinaria peltata exposed to Vibrio coralliilyticus.ResultsA. valida exhibited pronounced bleaching and tissue loss within 7 h of pathogen infection, whereas T. peltata showed no signs of disease throughout the experiment. Microbial diversity analyses revealed that T. peltata had a more flexible microbial community and a higher relative abundance of potential beneficial bacteria compared to A. valida. Although Vibrio inoculation resulted in a more significant decrease in the Symbiodiniaceae density of A. valida compared to that of T. peltata, it did not lead to recombination of the coral host and Symbiodiniaceae in either coral species. RNA-seq analysis revealed that the interspecific differences in the transcriptional regulation of hosts after Vibrio inoculation. Differentially expressed genes in A. valida were mainly enriched in the pathways associated with energy supply and immune response, such as G protein-coupled receptor signaling, toll-like receptor signaling, regulation of TOR signaling, while these genes in T. peltata were mainly involved in the pathway related to immune homeostasis and ion transport, such as JAK-STAT signaling pathway and regulation of ion transport.ConclusionsPathogenic challenges elicit different microbial and transcriptional shifts across coral species. This study offers novel insights into molecular mechanisms of coral resistance to disease.

Sponge-derived matter is assimilated by coral holobionts

Coral reef biodiversity is maintained by a complex network of nutrient recycling among organisms. Sponges assimilate nutrients produced by other organisms like coral and algae, releasing them as particulate and dissolved matter, but to date, only a single trophic link between sponge-derived dissolved matter and a macroalgae has been identified. We sought to determine if sponge-coral nutrient exchange is reciprocal using a stable isotope ‘pulse-chase’ experiment to trace the uptake of 13C and 15N sponge-derived matter by the coral holobiont for three coral species (Acropora cervicornis, Orbicella faveolata, and Eunicea flexuosa). Coral holobionts incorporated 2.3–26.8x more 15N than 13C from sponge-derived matter and A. cervicornis incorporated more of both C and N than the other corals. Differential isotopic incorporation among coral species aligns with their ecophysiological characteristics (e.g., morphology, Symbiodiniaceae density). Our results elucidate a recycling pathway on coral reefs that has implications for improving coral aquaculture and management approaches.

Effects of elevated temperature and copper exposure on the physiological state of the coral Galaxea fascicularis

The co-occurrence of elevated seawater temperature and local stressors (heavy metal contamination) affects the ecophysiology of phototrophic species, and represents a risk to the environmental quality of coral reefs. Therefore, we investigated the effects of both Cu alone and Cu in combination with elevated temperature (ET) on the physiology of the coral Galaxea fascicularis, and measured the parameters related to the photo-physiology and oxidative state. G.fascicularis is one of the dominant coral species in the South China Sea which exhibits strong adaptability to environmental stress. We exposed the common coral species G.fascicularis to a series of environmentally relevant concentrations of Cu at 29 °C (normal temperature, NT) and 32 °C (elevated temperature, ET) for 96 h. Single polyps were used in the experiments, which reduced individual variability when compared to the coral colonies. The results suggested that: i) Cu or ET had significant negative effects on the actual operating ability of photosystem Ⅱ (PSII), but not on the maximal chlorophyll fluorescence in darkness (Fv/Fm). ii) Symbiodiniaceae density was significantly reduced by high Cu concentrations, for Cu-NT and Cu-ET, a high concentration of Cu (40 μg/L) significantly impacted Symbiodiniaceae density, causing a 75.4% and 81.0% decrease, respectively. iii) the content of malondialdehyde (MDA) in coral tissues increased significantly under Cu-ET. iv) a certain range of copper concentration (25–30 μg/L) increased the pigment content of the Symbiodiniacea. Our results indicated that the combined stressors of Cu and ET made the coral tissue sloughed, caused the coral tissue damaged by lipid oxidation, reduced the photosynthetic capacity of the Symbiodiniacea, and led to the excretion of Symbiodiniacea.

Long-term preconditioning of the coral Pocillopora acuta does not restore performance in future ocean conditions

There is overwhelming evidence that tropical coral reefs are severely impacted by human induced climate change. Assessing the capability of reef-building corals to expand their tolerance limits to survive projected climate trajectories is critical for their protection and management. Acclimation mechanisms such as developmental plasticity may provide one means by which corals could cope with projected ocean warming and acidification. To assess the potential of preconditioning to enhance thermal tolerance in the coral Pocillopora acuta, colonies were kept under three different scenarios from settlement to 17 months old: present day (0.9 °C-weeks (Degree Heating Weeks), + 0.75 °C annual, 400 ppm pCO2) mid-century (2.5 °C-weeks, + 1.5 °C annual, 685 ppm pCO2) and end of century (5 °C-weeks, + 2 °C annual, 900 ppm pCO2) conditions. Colonies from the present-day scenario were subsequently introduced to the mid-century and end of century conditions for six weeks during summer thermal maxima to examine if preconditioned colonies (reared under these elevated conditions) had a higher physiological performance compared to naive individuals. Symbiodiniaceae density and chlorophyll a concentrations were significantly lower in mid-century and end of century preconditioned groups, and declines in symbiont density were observed over the six-week accumulated heat stress in all treatments. Maximum photosynthetic rate was significantly suppressed in mid-century and end of century preconditioned groups, while minimum saturating irradiances were highest for 2050 pre-exposed individuals with parents originating from specific populations. The results of this study indicate preconditioning to elevated temperature and pCO2 for 17 months did not enhance the physiological performance in P. acuta. However, variations in trait responses and effects on tolerance found among treatment groups provides evidence for differential capacity for phenotypic plasticity among populations which could have valuable applications for future restoration efforts.

The comparative effects of chronic microplastic and sediment deposition on the scleractinian coral Merulina ampliata

Despite increasing research into the effects of microplastics on corals, no study to date has compared this relatively novel pollutant with a well-established stressor such as downwelling sediments. Here, Merulina ampliata coral fragments were exposed to polyethylene terephthalate (PET) and calcium carbonate particles (200–300 μm) at two deposition levels, high (115.20 ± 5.83 mg cm−2 d−1, mean ± SE) and low (22.87 ± 1.90 mg cm−2 d−1) in specially-designed Flow-Through Resuspension (FloTR) chambers. After 28 d, there were no significant differences between fragments exposed to sediments and microplastics for coral skeletal growth, Symbiodiniaceae density, and areal or cellular chlorophyll a concentrations. There were also no significant differences between levels of treatments, or with the control fragments. More PET microplastic particles were incorporated into the coral skeletons of fragments exposed to microplastics compared to those exposed to sediment and the control fragments, but there was no difference between fragments exposed to high and low microplastic levels. Together, the results show that M. ampliata appears to be able to cope with both microplastic and sediment stress, and suggests that microplastics do not represent a more serious threat than downwelling sediments at the levels tested.

Physiological responses of Pocillopora corals to upwelling events in the Eastern Tropical Pacific

Upwelling events can change the sea water conditions within few hours during several months on a seasonal regimen. These events are predicted to intensify due to climate change, exposing shallow benthic organisms to hypoxia and thermal stress, among other extreme conditions. Some coral reefs in the Eastern Tropical Pacific (ETP) recurrently experience upwelling events. Coral reefs off Gorgona Island, Colombia, are exposed to lower oxygen concentrations (3.0 - 3.7 mg O2 L-1) and lower temperatures (17 - 24°C) from mid-January to mid-April, when upwelling develops, compared to the rest of the year (4.9 ± 0.7 mg O2 L-1, 28.4 ± 0.3°C, mean ± SD). While no visible signs of stress have been reported for corals during upwelling, it can be hypothesized that corals would be negatively affected by these changes. Therefore, the objectives of this study were to (1) identify the effects of temperature and hypoxia on the metabolic rate (MO2) of Pocillopora corals under lab conditions, and (2) to examine the changes in skeletal growth and Symbiodiniaceae density of Pocillopora in the field between upwelling and non-upwelling seasons. Findings revealed that MO2 was significantly reduced by 20% at 24°C and significantly increased by 10% at 32°C compared to 28°C. During the upwelling season, Pocillopora corals exhibited a 52% increase in Symbiodiniaceae density, but the growth rate decreased by 50% compared to the non-upwelling season. Fast changes in water conditions during the upwelling strongly affects the metabolism of Pocillopora corals. Although conditions during upwelling were not lethal, they compromised the energy of the coral for their vital functions, indicating that upwelling pushes them toward their physiological limit. Consequently, predicted increases in upwelling events in combination with ocean warming and deoxygenation may be particularly critical for upwelling-exposed corals and the reefs they build in the Eastern Tropical Pacific.

Phosphate enrichment increases the resilience of the pulsating soft coral Xenia umbellata to warming

Hard corals are in decline as a result of the simultaneous occurrence of global (e.g., ocean warming) and local (e.g., inorganic eutrophication) factors, facilitating phase shifts towards soft coral dominated reefs. Yet, related knowledge about soft coral responses to anthropogenic factors remains scarce. We thus investigated the ecophysiological response of the pulsating soft coral Xenia umbellata to individual and combined effects of phosphate enrichment (1, 2, and 8 μM) and ocean warming (26 to 32°C) over 35 days. Throughout the experiment, we assessed pulsation, mortality, Symbiodiniaceae density, and cellular chlorophyll a content. Simulated ocean warming up to 30°C led to a significant increase in polyp pulsation and by the end of the experiment to a significant increase in Symbiodiniaceae density, whereas cellular chlorophyll a content significantly decreased with warming, regardless of the phosphate treatment. The combination of phosphate enrichment and simulated ocean warming increased pulsation significantly by 41 – 44%. Warming alone and phosphate enrichment alone did not affect any of the investigated response parameters. Overall, X. umbellata displayed a high resilience towards ocean warming with no mortality in all treatments. Phosphate enrichment enabled soft corals to significantly increase their pulsation under increasing temperatures which may enhance their resilience towards ocean warming. This, in turn, could further facilitate their dominance over hard corals on future reefs.

Adaptive Responses of the Sea Anemone Heteractis crispa to the Interaction of Acidification and Global Warming.

Simple SummaryThis study investigated the effects of the interaction of acidification and warming on the photosynthetic apparatus and sterol metabolism of sea anemone Heteractis crispa. Thermal stress is the dominant driver of the deteriorating health of H. crispa, which might be relatively insensitive to the impact of ocean acidification; upregulation of chlorophyll content is suggested as an important strategy for symbionts to adapt to high pCO2. However, warming and acidification (alone or combined) significantly affected the cholesterol or sterol levels. Indeed, environmental changes like warming and acidification will affect the sterol metabolism and health of H. crispa in the coming decades.Ocean acidification and warming are two of the most important threats to the existence of marine organisms and are predicted to co-occur in oceans. The present work evaluated the effects of acidification (AC: 24 ± 0.1 °C and 900 μatm CO2), warming (WC: 30 ± 0.1 °C and 450 μatm CO2), and their combination (CC: 30 ± 0.1 °C and 900 μatm CO2) on the sea anemone, Heteractis crispa, from the aspects of photosynthetic apparatus (maximum quantum yield of photosystem II (PS II), chlorophyll level, and Symbiodiniaceae density) and sterol metabolism (cholesterol content and total sterol content). In a 15-day experiment, acidification alone had no apparent effect on the photosynthetic apparatus, but did affect sterol levels. Upregulation of their chlorophyll level is an important strategy for symbionts to adapt to high partial pressure of CO2 (pCO2). However, after warming stress, the benefits of high pCO2 had little effect on stress tolerance in H. crispa. Indeed, thermal stress was the dominant driver of the deteriorating health of H. crispa. Cholesterol and total sterol contents were significantly affected by all three stress conditions, although there was no significant change in the AC group on day 3. Thus, cholesterol or sterol levels could be used as important indicators to evaluate the impact of climate change on cnidarians. Our findings suggest that H. crispa might be relatively insensitive to the impact of ocean acidification, whereas increased temperature in the future ocean might impair viability of H. crispa.

Lower cold tolerance of tropical Porites lutea is possibly detrimental to its migration to relatively high latitude refuges in the South China Sea.

As high temperature stress due to climate change threatens tropical corals, cooler areas at relatively high latitudes may be potential refuges. Tolerance to low temperatures is critical in determining whether corals can successfully migrate to higher latitudes. However, the physiological and molecular adaptations that protect corals from low temperature stress are unclear. In this study, scleractinian Porites lutea samples from the tropical Xisha Islands (XS) and subtropical Daya Bay (DY) in the South China Sea were subjected to a reduction in ambient temperature from 26 to 12°C. Differences in physiological changes and gene expression were analysed. P. lutea from both XS and DY exhibited physiological bleaching under low temperature stress, and the Symbiodiniaceae density, Fv/Fm, and chlorophyll-α content were significantly reduced. Symbiosome antioxidative stress and metabolic enzyme activity first increased and then decreased. RNA-seq analysis showed that the host responded to low temperature stress by activating immune, apoptotic, and autophagic pathways and reducing metabolic levels. Nevertheless, Symbiodiniaceae lacked the physiological regulatory capacity to adapt to low temperatures. The lower cold tolerance of XS tropical P. lutea may attribute to lower oxidative stress resistance, lower photosynthetic capacity, worse energy supply, and higher susceptibility to bacterial and viral infections and diseases in XS corals. The difference in cold tolerance may result from genetic differences between the geographic populations and is possibly detrimental to the migration of tropical coral to relatively high latitude refuges. This study provides a theoretical basis for anthropogenically assisted coral migration as a response to global change.

Differences in Fatty Acids and Lipids of Massive and Branching Reef-Building Corals and Response to Environmental Changes

Reef-building corals present various colony morphologies that may greatly influence their nutritional ecology. Fatty acids (FAs) and lipids are important components of corals and have been increasingly used to research the nutritional ecology of corals. In this study, we examined the symbiodiniaceae density, corallite area, total lipid content, and FAs composition of 14 species of corals with different colony morphologies. The results showed that the different colony morphology of coral was significantly correlated with the corallite area but not with the symbiodiniaceae density. Massive corals, with a large corallite area (7.16 ± 6.29 mm2), could ingest a high quantity of food, leading to high levels of total lipid content and unsaturated FAs [particularly n-6 polyunsaturated FAs (PUFAs) and monounsaturated FAs]. For branching corals, the total lipid content and saturated FAs (SFAs, 16:0 and 18:0) were significantly positively correlated with the Symbiodiniaceae density, indicating that branching corals are predominantly autotrophic. Moreover, compared with healthy corals, bleached corals consume larger amounts of stored energy (such as lipids and SFAs) to maintain their normal physiological functions. Although bleached corals may obtain PUFAs from heterotrophic assimilation or biosynthesize, the efficiency is too low to sufficiently replenish essential PUFAs in a short time. Overall, massive corals with more initial total lipid content and PUFAs exhibit an advantage under adverse environmental conditions.

Bleaching Susceptibility and Resistance of Octocorals and Anemones at the World's Southern-Most Coral Reef.

Coral reefs are amongst the most biodiverse ecosystems on earth, and while stony corals create the foundational complexity of these ecosystems, octocorals and anemones contribute significantly to their biodiversity and function. Like stony corals, many octocorals contain Symbiodiniaceae endosymbionts and can bleach when temperatures exceed the species’ upper thermal limit. Here, we report octocoral bleaching susceptibility and resistance within the subtropical Lord Howe Island coral reef ecosystem during and after marine heatwaves in 2019. Octocoral and anemone surveys were conducted at multiple reef locations within the Lord Howe Island lagoon during, immediately after, and 7 months after the heatwaves. One octocoral species, Cladiella sp. 1, experienced bleaching and mortality, with some bleached colonies detaching from the reef structure during the heatwave (presumed dead). Those that remained attached to the benthos survived the event and recovered endosymbionts within 7 months of bleaching. Cladiella sp. 1 Symbiodiniaceae density (in cells per µg protein), chlorophyll a and c 2 per µg protein, and photosynthetic efficiency were significantly lower in bleached colonies compared to unbleached colonies, while chlorophyll a and c 2 per symbiont were higher. Interestingly, no other symbiotic octocoral species of the Lord Howe Island lagoonal reef bleached. Unbleached Xenia cf crassa colonies had higher Symbiodiniaceae and chlorophyll densities during the marine heatwave compared to other monitoring intervals, while Cladiella sp. 2 densities did not change substantially through time. Previous work on octocoral bleaching has focused primarily on gorgonian octocorals, while this study provides insight into bleaching variability in other octocoral groups. The study also provides further evidence that octocorals may be generally more resistant to bleaching than stony corals in many, but not all, reef ecosystems. Responses to marine heating events vary and should be assessed on a species by species basis.

Physiological acclimatization in Hawaiian corals following a 22-month shift in baseline seawater temperature and pH

Climate change poses a major threat to coral reefs. We conducted an outdoor 22-month experiment to investigate if coral could not just survive, but also physiologically cope, with chronic ocean warming and acidification conditions expected later this century under the Paris Climate Agreement. We recorded survivorship and measured eleven phenotypic traits to evaluate the holobiont responses of Hawaiian coral: color, Symbiodiniaceae density, calcification, photosynthesis, respiration, total organic carbon flux, carbon budget, biomass, lipids, protein, and maximum Artemia capture rate. Survivorship was lowest in Montipora capitata and only some survivors were able to meet metabolic demand and physiologically cope with future ocean conditions. Most M. capitata survivors bleached through loss of chlorophyll pigments and simultaneously experienced increased respiration rates and negative carbon budgets due to a 236% increase in total organic carbon losses under combined future ocean conditions. Porites compressa and Porites lobata had the highest survivorship and coped well under future ocean conditions with positive calcification and increased biomass, maintenance of lipids, and the capacity to exceed their metabolic demand through photosynthesis and heterotrophy. Thus, our findings show that significant biological diversity within resilient corals like Porites, and some genotypes of sensitive species, will persist this century provided atmospheric carbon dioxide levels are controlled. Since Porites corals are ubiquitous throughout the world’s oceans and often major reef builders, the persistence of this resilient genus provides hope for future reef ecosystem function globally.

Will daytime community calcification reflect reef accretion on future, degraded coral reefs?

Abstract. Coral bleaching events continue to drive the degradation of coral reefs worldwide, causing a shift in the benthic community from coral- to algae-dominated ecosystems. Critically, this shift may decrease the capacity of degraded coral reef communities to maintain net positive accretion during warming-driven stress events (e.g., reef-wide coral bleaching). Here we measured rates of net ecosystem calcification (NEC) and net ecosystem production (NEP) on a degraded coral reef lagoon community (coral cover < 10 % and algae cover > 20 %) during a reef-wide bleaching event in February 2020 at Heron Island on the Great Barrier Reef. We found that during this bleaching event, rates of NEP and NEC across replicate transects remained positive and did not change in response to bleaching. Repeated benthic surveys over a period of 20 d indicated an increase in the percent area of bleached coral tissue, corroborated by relatively low Symbiodiniaceae densities (∼ 0.6 × 106 cm−2) and dark-adapted photosynthetic yields in photosystem II of corals (∼ 0.5) sampled along each transect over this period. Given that a clear decline in coral health was not reflected in the overall NEC estimates, it is possible that elevated temperatures in the water column that compromise coral health enhanced the thermodynamic favorability for calcification in other ahermatypic benthic calcifiers. These data suggest that positive NEC on degraded reefs may not equate to the net positive accretion of a complex, three-dimensional reef structure in a future, warmer ocean. Critically, our study highlights that if coral cover continues to decline as predicted, NEC may no longer be an appropriate proxy for reef growth as the proportion of the NEC signal owed to ahermatypic calcification increases and coral dominance on the reef decreases.

Significant Changes in Bacterial Communities Associated with Pocillopora Corals Ingestion by Crown-of-Thorns Starfish: An Important Factor Affecting the Coral's Health.

Coral ingestion by crown-of-thorns starfish (COTS) is an important cause of coral reef degradation, although the impacts of COTS feeding on coral-associated microbial communities are not well understood. Therefore, in this study, we analyzed the coral tissue-weight, Symbiodiniaceae density (SD), bacterial community composition, and the predicted functions of bacterial genes associated with Pocillopora corals in healthy portions and feeding scars, following COTS feeding. Coral tissue-weight loss rate in the feeding scars was 71.3–94.95%. The SDs were significantly lower in the feeding scars, and the SD-loss rate was 92.05% ± 2.12%. The relative abundances of bacterial communities associated with Pocillopora corals after COTS feeding changed significantly and were almost completely reorganized at the phylum and genus levels. Analysis of the microbial metagenomic-functional capacities showed that numerous physiological functions of the coral-bacterial holobionts in the feeding scars were different, including amino acid metabolism, xenobiotic biodegradation and metabolism, lipid metabolism, membrane transport, signal transduction, and cell motility, and all these capacities could be corroborated based on metagenomic, transcriptomic or proteomic technologies. Overall, our research suggests that coral holobionts may be destroyed by COTS, and our findings imply that bacterial communities in feeding scars could affect the health of Pocillopora corals.

Thermal stress triggers productive viral infection of a key coral reef symbiont.

Climate change-driven ocean warming is increasing the frequency and severity of bleaching events, in which corals appear whitened after losing their dinoflagellate endosymbionts (family Symbiodiniaceae). Viral infections of Symbiodiniaceae may contribute to some bleaching signs, but little empirical evidence exists to support this hypothesis. We present the first temporal analysis of a lineage of Symbiodiniaceae-infecting positive-sense single-stranded RNA viruses ("dinoRNAVs") in coral colonies, which were exposed to a 5-day heat treatment (+2.1 °C). A total of 124 dinoRNAV major capsid protein gene "aminotypes" (unique amino acid sequences) were detected from five colonies of two closely related Pocillopora-Cladocopium (coral-symbiont) combinations in the experiment; most dinoRNAV aminotypes were shared between the two coral-symbiont combinations (64%) and among multiple colonies (82%). Throughout the experiment, seventeen dinoRNAV aminotypes were found only in heat-treated fragments, and 22 aminotypes were detected at higher relative abundances in heat-treated fragments. DinoRNAVs in fragments of some colonies exhibited higher alpha diversity and dispersion under heat stress. Together, these findings provide the first empirical evidence that exposure to high temperatures triggers some dinoRNAVs to switch from a persistent to a productive infection mode within heat-stressed corals. Over extended time frames, we hypothesize that cumulative dinoRNAV production in the Pocillopora-Cladocopium system could affect colony symbiotic status, for example, by decreasing Symbiodiniaceae densities within corals. This study sets the stage for reef-scale investigations of dinoRNAV dynamics during bleaching events.

Lagoon coral microbiomes and their potential relationship with adaptation of coral holobionts to extreme high-temperature environments

Numerous corals can survive in high-temperature environments, but little attention has been paid to the microbiome of lagoon corals and their potential adaptation to thermal environments. In this study, we explored this issue by analyzing the coral-symbiotic Symbiodiniaceae, Symbiodiniaceae densities, and bacterial communities among coral species and seawater in the lagoon regions of the southern South China Sea (SCS). Galaxea fascicularis had the highest Symbiodiniaceae density and relative abundance of heat-tolerant Symbiodiniaceae (Durusdinium trenchii), and Acropora cytherea had the lowest density, but the highest diversity, of Symbiodiniaceae. The Symbiodiniaceae diversity of Fungia fungites was the lowest. Moreover, the Symbiodiniaceae community and diversity differed significantly between the lagoon and open-ocean seawater. In addition, the relative abundance of Vibrio was higher in coral holobionts than in the lagoon seawater samples. The relative abundance of Ruegeria was highest in A. cytherea, indicating that coral-associated bacteria in the lagoon were affected by high thermal stress during summer. However, corals in the lagoon may adopt different adaptation strategies for high-temperature environments. G. fascicularis corals may adapt to lagoon environments by symbiosis with heat-tolerant Symbiodiniaceae at high densities and abundance, whereas A. cytherea may survive in the lagoon environment based on a highly flexible symbiosis associated with the high photosynthetic efficiency of Symbiodiniaceae and bacteria.

Effects of climate change and light limitation on coral recruits

Climate change impacts and light attenuation from suspended sediments, due to runoff, natural resuspension or dredging, can both impede the replenishment of coral populations. Here we tested the independent and combined impacts of climate change (current temperature and dissolved CO2, and 2 future climate scenarios) and a 1 mo long light attenuation period at 5 different light levels (0.1 to 4 mol photons m-2 d-1) on early Acropora millepora recruits. Additionally, we evaluated whether the effects were age dependent by comparing responses of recruits that were 1 mo old (‘early attenuation’) vs. 2 mo old (‘late attenuation’). Recruit survival, size and Symbiodiniaceae densities increased slightly under moderate future climate conditions (current temperature +0.44°C, 692 ppm pCO2), but decreased under a more severe climate scenario (+0.94°C, 985 ppm pCO2). Light attenuation significantly decreased recruit survival, size and Symbiodiniaceae densities only for recruits exposed to the late attenuation, suggesting an increasing reliance on photosynthesis as recruits age. Under the more severe climate scenario tested, recruit survival was diminished by both climate change (≤18 ± 4% [SE] in the early attenuation) and light limitation (≤32 ± 6% in the late attenuation) compared with controls. However, there was no interaction between future climate scenarios and light attenuation, indicating that these effects were additive. This study demonstrates the potential effects of light limitation and future climate conditions on coral recruitment success and highlights the need to manage the timing of sediment-generating activities near reefs to optimise light availability for several months post settlement.

Regulation of the Coral-Associated Bacteria and Symbiodiniaceae in Acropora valida Under Ocean Acidification.

Ocean acidification is one of many stressors that coral reef ecosystems are currently contending with. Thus, understanding the response of key symbiotic microbes to ocean acidification is of great significance for understanding the adaptation mechanism and development trend of coral holobionts. Here, high-throughput sequencing technology was employed to investigate the coral-associated bacteria and Symbiodiniaceae of the ecologically important coral Acropora valida exposed to different pH gradients. After 30 days of acclimatization, we set four acidification gradients (pH 8.2, 7.8, 7.4, and 7.2, respectively), and each pH condition was applied for 10 days, with the whole experiment lasting for 70 days. Although the Symbiodiniaceae density decreased significantly, the coral did not appear to be bleached, and the real-time photosynthetic rate did not change significantly, indicating that A. valida has strong tolerance to acidification. Moreover, the Symbiodiniaceae community composition was hardly affected by ocean acidification, with the C1 subclade (Cladocopium goreaui) being dominant among the Symbiodiniaceae dominant types. The relative abundance of the Symbiodiniaceae background types was significantly higher at pH 7.2, indicating that ocean acidification might increase the stability of the community composition by regulating the Symbiodiniaceae rare biosphere. Furthermore, the stable symbiosis between the C1 subclade and coral host may contribute to the stability of the real-time photosynthetic efficiency. Finally, concerning the coral-associated bacteria, the stable symbiosis between Endozoicomonas and coral host is likely to help them adapt to ocean acidification. The significant increase in the relative abundance of Cyanobacteria at pH 7.2 may also compensate for the photosynthesis efficiency of a coral holobiont. In summary, this study suggests that the combined response of key symbiotic microbes helps the whole coral host resist the threats of ocean acidification.