Terrestrial organic matter from surrounding primary vegetation is critical for carbon cycling in thermokarst lakes. However, the characteristics and contribution of this vegetation in shaping microbial community and affecting carbon emissions in thermokarst lakes remain poorly understood. This study quantifies the influence of lakeshore primary vegetation characteristics on microbial community and carbon emissions across lakes with different vegetation types on the Qinghai-Tibet Plateau (QTP). Our findings indicate that methane (CH4) diffusion and ebullition emissions increase significantly from alpine desert (AD), alpine steppe (AS), alpine meadow (AM) to swamp meadow (SM). Specifically, diffusion fluxes in lakes averaged 1.7 mmol m-2 d-1 (ranging from 0.04 to 5.7 mmol m-2 d-1), and ebullition fluxes in lakes averaged 14.5 mmol m-2 d-1 (ranging from 0.18 to 99.1 mmol m-2 d-1). Carbon dioxide (CO2) diffusive emissions in SM, AM, AS were significantly higher than AD, with fluxes ranging from -14.12 mmol m-2 d-1 to 51.33 mmol m-2 d-1. The primary vegetation diversity also showed a significant increase from AD (3.17 ± 1.33), AS (5.33 ± 1.63), AM (4.5 ± 1.05) to SM (9.2 ± 1.40). Lake shore primary vegetation diversity indirectly enhances CH4 and CO2 emissions by altering water pH. Additionally, it influences methane-cycling microorganisms through pH regulation, further promoting CH4 emissions. Greater vegetation diversity also increases CH4 emissions by affecting sediment microbial carbon. These results underscore the importance of integrating vegetation diversity and microbial community patterns into carbon cycling models to improve the predictions of thermokarst lake carbon emissions in a warming and greening future, emphasizing the urgent requirement to protect the pristine environments of permafrost regions.
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